RLG00000015004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000125
Physical Location & Seq
Reverse (-)
60494334 .. 60495341
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015004

Sequence Viewer

Length: 1008 bp
ATGAAGACCTTCCGCCTACTTCAATACCACGGTGGCAATGCCTTGAATATGAAAGAACATGGAAATGGGTCAGAGATCATAGTAAGCCAGAAGTGTACCTACGAGGTAGGTTGTGTTTTCGGCAACTTGATTTGCTTTAAAGATGTCAGTTATGGAGGTCCGAGCTTCTTGTTGAATCCTCTAATGGGAGAAGTTCTACGGCTTCCGGCTAGTAAGGTGCCAATCCCAGCCTCTATTAGATGTCGCCGTGAGCTTTTTGACTGGCTTGCTATGGGATTTGATGACACAACCGGCACGCACAAGATTCTTCGTGTTTGCGGTAATTCACAGTACAAGAATTACCTGGTGGCCCGAGTACTTGTATTGGGCACAGATTCATGGCGAGAGATACATGCAGTTCCTCCTTGTAATTTGAGCCACAAAAATGCGTCTGCAGGTGGAGACATGCATTGGCTGATTGACAAACAATCGAGAACTAGAGTAAGGCGAGAAAGTAATATAGTTTCCTTCGACTTCAAGAAAGAGGAGTTTTATTGGACTTCTCATCCCAAATTAAGAAGTCAGTTCTCCGACTTGAATTTGGTTAATCTGAAAGGACGCTTAGCAATTTTGGATGCTTGGTTACATAACCATGGCTTGTTCATCGAGATATGGGTGTTGAAAAATTATGAAGTGAAAGAGTGGGTGCGAGAGTACTGCACAGAAATCAAATTTGTGTTTCCTTGTTTTACGGTTAGTTTTGGTGAATGGGAACATGGTATATTTTTCAAAGATGCAATTAGCAGGGGGTTTCAGAACAGAGCTAGTGCAATGTTTTTGGATCTAAGAGGTAGTAGTGTTCAAGTGGAACTGGTGAAGTGTCCTATATTAATGCAGAACTGGACTATCATCAGCTATACTGGGGGCCTCATTTCCCTAAAGCATTACGGCAATTTGGTTGAACCGGAAGAATGTGATGAGTACCGGAAGCAGCTTGGTTTCTCTGAAAAATTATGGCTAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

336

Amino Acids

38.62

Weight (kDa)

8.45

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 37 - 233 1.1e-23 F-box associated beta propeller domain
FBA_1 PF07734 79 - 229 8.4e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 217
AciI CCGC 2 cut(s) 13, 318
AclWI GGATC 1 cut(s) 828
AcsI RAATTY 2 cut(s) 577, 710
AfaI GTAC 5 cut(s) 97, 332, 357, 695, 962
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 9 cut(s) 23, 46, 175, 517, 577, 661, 769, 842, 941
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 5 cut(s) 165, 253, 803, 894, 973
AluI AGCT 5 cut(s) 165, 253, 803, 894, 973
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 1 cut(s) 828
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 2 cut(s) 348, 904
ApeKI GCWGC 1 cut(s) 970
ApoI RAATTY 2 cut(s) 577, 710
AseI ATTAAT 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 158, 349, 904
AsuHPI GGTGA 2 cut(s) 755, 865
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 982
BceAI ACGGC 3 cut(s) 215, 231, 943
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 3 cut(s) 210, 477, 804
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 1 cut(s) 971
BlpI GCTNAGC 1 cut(s) 601
BlsI GCNGC 1 cut(s) 972
BmcAI AGTACT 2 cut(s) 357, 695
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 3 cut(s) 158, 349, 904
BmiI GGNNCC 2 cut(s) 219, 905
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 2 cut(s) 604, 763
BmuI ACTGGG 1 cut(s) 909
BpiI GAAGAC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 28, 631
BsaWI WCCGGW 2 cut(s) 943, 963
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 4 cut(s) 266, 855, 884, 904
Bse3DI GCAATG 2 cut(s) 43, 816
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 28, 631
BseGI GGATG 2 cut(s) 544, 619
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 2 cut(s) 43, 816
BseNI ACTGG 4 cut(s) 266, 855, 884, 904
BseRI GAGGAG 1 cut(s) 539
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 1 cut(s) 982
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 682
BshFI GGCC 2 cut(s) 350, 906
BshNI GGYRCC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 4 cut(s) 206, 291, 944, 964
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 435
BsnI GGCC 2 cut(s) 350, 906
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 2 cut(s) 75, 820
Bsp1720I GCTNAGC 1 cut(s) 601
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 2 cut(s) 13, 318
BspANI GGCC 2 cut(s) 350, 906
BspLI GGNNCC 2 cut(s) 219, 905
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 828
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 43, 816
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 4 cut(s) 266, 855, 884, 904
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 28, 631
BssMI GATC 2 cut(s) 75, 820
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 32, 330, 733
BstC8I GCNNGC 2 cut(s) 267, 296
BstDEI CTNAG 2 cut(s) 601, 824
BstDSI CCRYGG 2 cut(s) 28, 631
BstF5I GGATG 2 cut(s) 544, 619
BstKTI GATC 2 cut(s) 78, 823
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 2 cut(s) 75, 820
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 395, 448
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 982
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuRI GGCC 2 cut(s) 350, 906
BtgI CCRYGG 2 cut(s) 28, 631
BtsCI GGATG 2 cut(s) 544, 619
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 267, 296
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 158, 349, 904
CseI GACGC 2 cut(s) 417, 606
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 5 cut(s) 96, 331, 356, 694, 961
CviAII CATG 6 cut(s) 59, 378, 392, 445, 632, 755
CviQI GTAC 5 cut(s) 96, 331, 356, 694, 961
DdeI CTNAG 2 cut(s) 601, 824
DpnI GATC 2 cut(s) 77, 822
DpnII GATC 2 cut(s) 75, 820
DraI TTTAAA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 6 cut(s) 62, 381, 395, 448, 635, 758
FatI CATG 6 cut(s) 58, 377, 391, 444, 631, 754
Fnu4HI GCNGC 1 cut(s) 971
FokI GGATG 2 cut(s) 531, 626
Fsp4HI GCNGC 1 cut(s) 971
FspBI CTAG 3 cut(s) 210, 477, 804
GluI GCNGC 1 cut(s) 971
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 2 cut(s) 350, 906
HapII CCGG 4 cut(s) 206, 291, 944, 964
HgaI GACGC 2 cut(s) 417, 606
Hin1II CATG 6 cut(s) 62, 381, 395, 448, 635, 758
HinfI GANTC 3 cut(s) 175, 304, 374
HpaII CCGG 4 cut(s) 206, 291, 944, 964
HphI GGTGA 2 cut(s) 755, 865
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 6 cut(s) 73, 162, 571, 591, 795, 985
Hpy188III TCNNGA 3 cut(s) 471, 517, 646
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 2 cut(s) 19, 517
HpyCH4III ACNGT 3 cut(s) 32, 330, 733
HpyCH4V TGCA 7 cut(s) 395, 434, 448, 699, 776, 809, 874
HpyF3I CTNAG 2 cut(s) 601, 824
Hsp92II CATG 6 cut(s) 62, 381, 395, 448, 635, 758
Kzo9I GATC 2 cut(s) 75, 820
Lsp1109I GCAGC 1 cut(s) 982
LweI GCATC 2 cut(s) 604, 763
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 3 cut(s) 210, 477, 804
MaeIII GTNAC 1 cut(s) 621
MalI GATC 2 cut(s) 77, 822
MboI GATC 2 cut(s) 75, 820
MboII GAAGA 3 cut(s) 16, 299, 959
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 8 cut(s) 97, 149, 189, 241, 411, 517, 821, 917
Mph1103I ATGCAT 1 cut(s) 450
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 138, 554, 585, 869
MslI CAYNNNNRTG 3 cut(s) 63, 423, 630
MspI CCGG 4 cut(s) 206, 291, 944, 964
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 631
NdeII GATC 2 cut(s) 75, 820
NlaIII CATG 6 cut(s) 62, 381, 395, 448, 635, 758
NlaIV GGNNCC 2 cut(s) 219, 905
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 2 cut(s) 395, 448
PaqCI CACCTGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 175, 304, 374
PkrI GCNGC 1 cut(s) 972
PshBI ATTAAT 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 219, 905
PspPI GGNCC 3 cut(s) 158, 349, 904
PstI CTGCAG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 5 cut(s) 97, 332, 357, 695, 962
RsaNI GTAC 5 cut(s) 96, 331, 356, 694, 961
RseI CAYNNNNRTG 3 cut(s) 63, 423, 630
SaqAI TTAA 4 cut(s) 138, 554, 585, 869
SatI GCNGC 1 cut(s) 971
Sau3AI GATC 2 cut(s) 75, 820
Sau96I GGNCC 3 cut(s) 158, 349, 904
ScaI AGTACT 2 cut(s) 357, 695
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 371
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 2 cut(s) 604, 763
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 3 cut(s) 63, 423, 630
SsiI CCGC 2 cut(s) 13, 318
SspMI CTAG 3 cut(s) 210, 477, 804
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 3 cut(s) 32, 330, 733
TaqI TCGA 3 cut(s) 470, 510, 645
TatI WGTACW 3 cut(s) 330, 355, 693
TfiI GAWTC 3 cut(s) 175, 304, 374
Tru1I TTAA 4 cut(s) 138, 554, 585, 869
Tru9I TTAA 4 cut(s) 138, 554, 585, 869
TseI GCWGC 1 cut(s) 970
TspDTI ATGAA 5 cut(s) 17, 65, 366, 631, 684
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 869
XapI RAATTY 2 cut(s) 577, 710
XceI RCATGY 2 cut(s) 395, 448
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 210, 477, 804
ZrmI AGTACT 2 cut(s) 357, 695
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.