RLG00000004426

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000125
Physical Location & Seq
Forward (+)
59254586 .. 59255440
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004426

Sequence Viewer

Length: 855 bp
ATGGAGATTGAGACCAAGAAAATGAAGAGGCAGTTCTGCAGCAACCACAACACCGCAAAGCCAACTGTGATCAACGACCTACCAAAGGCTATCTTGGTCCAAATCCTTTTGAAACTGCCCTCAAAATCACTCTTTTGCCTCCGTTGTGTGTCTAAGGCCTTCTCAAGGTCCGTCGACGACCACTCTTTCACTGCACTTCACAACCAGTTACTTGTGGATGCCAAAGGTGCTTTAGATGTCCCCCGACTTCTGGCTGTTAAAAATGTTCGATCATCTAGTTCCTCAAATTTTGTGGCTCTTCGATCGGTCAAGTACGACGGCAGCTCCTTAACAAAAGGCAACTATGCAGTCGAGGTATCGAGCAGCATGTACTTACATTTTGTCTTCCAAAATTTATTTGGCTTTAGATTGTGTGGTGATGAGCAGCAGTTCTTGTTAGTCAATCCACTAAGGAGAGGAGAAGTTATGAGACTCCCAACAAGTAGCAACATACAACATCTTACAAGAAATAAGGATCCGGAAGTGAGATTTGTTTATTACTATGGCATAGGATTCGATAAGACAAATACCAAGCACAAAATTGTTCGTGTTCGCAGAATCTGTAGAGAAGCACCATATGATTACAGATTGCTGTATGCGGGGACCCATGTTCTTGAATTGGGTACAACCTCATGGCGTGAGATAGACTCGGCTGTTCCCGGTAACTGGAGATTACTGGATGGCGTATGTGCATGTGGAGATATGCAGTGGTGTGCAAGTGGAGATACGCATTGGTTGAATAGAAGTGCACTGCAGAGTGGTATAATCACTTTTGACTTCACGAAAGAAGGGTTCTATTTGAATCCTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

285

Amino Acids

32.27

Weight (kDa)

9.39

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 64 1.6e-07 F-box domain
F-box-like PF12937 24 - 62 3.5e-06 F-box-like
FBA_3 PF08268 111 - 279 7.5e-09 F-box associated beta propeller domain
FBA_1 PF07734 140 - 279 2e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 2 cut(s) 54, 638
AclWI GGATC 2 cut(s) 509, 522
AcsI RAATTY 2 cut(s) 286, 391
AfaI GTAC 3 cut(s) 314, 371, 664
AfiI CCNNNNNNNGG 4 cut(s) 85, 165, 250, 705
AgsI TTSAA 4 cut(s) 112, 656, 778, 841
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 2 cut(s) 5, 463
Alw44I GTGCAC 1 cut(s) 786
AlwI GGATC 2 cut(s) 509, 522
AlwNI CAGNNNCTG 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 786
ApeKI GCWGC 4 cut(s) 39, 321, 363, 424
ApoI RAATTY 2 cut(s) 286, 391
AspS9I GGNCC 3 cut(s) 97, 168, 642
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 3 cut(s) 97, 168, 642
BaeGI GKGCMC 1 cut(s) 790
BamHI GGATCC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 4 cut(s) 51, 333, 375, 436
BccI CCATC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 2 cut(s) 5, 463
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 3 cut(s) 37, 601, 791
BisI GCNGC 4 cut(s) 40, 322, 364, 425
BlsI GCNGC 4 cut(s) 41, 323, 365, 426
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 3 cut(s) 97, 168, 642
BmgT120I GGNCC 3 cut(s) 97, 168, 642
BmiI GGNNCC 3 cut(s) 516, 643, 644
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 376
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 1 cut(s) 727
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 165, 250, 705
Bse1I ACTGG 3 cut(s) 205, 710, 720
BseAI TCCGGA 1 cut(s) 517
BseGI GGATG 2 cut(s) 223, 724
BseLI CCNNNNNNNGG 4 cut(s) 85, 165, 250, 705
BseNI ACTGG 3 cut(s) 205, 710, 720
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 4 cut(s) 51, 333, 375, 436
BsgI GTGCAG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 790
BsiSI CCGG 2 cut(s) 518, 699
BslFI GGGAC 2 cut(s) 224, 655
BslI CCNNNNNNNGG 4 cut(s) 85, 165, 250, 705
BsmAI GTCTC 2 cut(s) 5, 463
BsmFI GGGAC 2 cut(s) 224, 655
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 790
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 4 cut(s) 69, 269, 302, 514
BspACI CCGC 2 cut(s) 54, 638
BspANI GGCC 1 cut(s) 158
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 516, 643, 644
BspMAI CTGCAG 2 cut(s) 41, 795
BspPI GGATC 2 cut(s) 509, 522
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 3 cut(s) 205, 710, 720
BssMI GATC 4 cut(s) 69, 269, 302, 514
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 20, 303
BstDEI CTNAG 2 cut(s) 153, 449
BstENI CCTNNNNNAGG 2 cut(s) 83, 163
BstF5I GGATG 2 cut(s) 223, 724
BstKTI GATC 4 cut(s) 72, 272, 305, 517
BstMAI GTCTC 2 cut(s) 5, 463
BstMBI GATC 4 cut(s) 69, 269, 302, 514
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 2 cut(s) 370, 735
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 3 cut(s) 37, 601, 791
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 4 cut(s) 51, 333, 375, 436
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 223, 724
BtsI GCAGTG 3 cut(s) 189, 752, 788
BtsIMutI CAGTG 3 cut(s) 189, 752, 788
CaiI CAGNNNCTG 1 cut(s) 600
Cfr13I GGNCC 3 cut(s) 97, 168, 642
Csp6I GTAC 3 cut(s) 313, 370, 663
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 4 cut(s) 367, 647, 672, 732
CviJI RGCY 8 cut(s) 61, 89, 158, 254, 296, 324, 402, 692
CviKI_1 RGCY 8 cut(s) 61, 89, 158, 254, 296, 324, 402, 692
CviQI GTAC 3 cut(s) 313, 370, 663
DdeI CTNAG 2 cut(s) 153, 449
DpnI GATC 4 cut(s) 71, 271, 304, 516
DpnII GATC 4 cut(s) 69, 269, 302, 514
Eam1104I CTCTTC 2 cut(s) 20, 303
EarI CTCTTC 2 cut(s) 20, 303
Eco147I AGGCCT 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 3 cut(s) 97, 168, 642
EcoNI CCTNNNNNAGG 2 cut(s) 83, 163
EcoO109I RGGNCCY 1 cut(s) 642
FaeI CATG 4 cut(s) 370, 650, 675, 735
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 2 cut(s) 224, 655
FatI CATG 4 cut(s) 366, 646, 671, 731
FauI CCCGC 1 cut(s) 631
FauNDI CATATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 40, 322, 364, 425
FokI GGATG 2 cut(s) 230, 731
Fsp4HI GCNGC 4 cut(s) 40, 322, 364, 425
FspBI CTAG 1 cut(s) 276
GluI GCNGC 4 cut(s) 40, 322, 364, 425
GsuI CTGGAG 1 cut(s) 727
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 518, 699
Hin1II CATG 4 cut(s) 370, 650, 675, 735
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 5 cut(s) 471, 552, 597, 686, 841
HpaII CCGG 2 cut(s) 518, 699
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 175, 788
Hpy188III TCNNGA 3 cut(s) 518, 653, 820
Hpy8I GTNNAC 2 cut(s) 175, 788
Hpy99I CGWCG 3 cut(s) 176, 179, 320
HpyAV CCTTC 2 cut(s) 169, 821
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 8 cut(s) 39, 194, 347, 731, 745, 755, 788, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 153, 449
Hsp92II CATG 4 cut(s) 370, 650, 675, 735
KflI GGGWCCC 1 cut(s) 642
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 269, 302, 514
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 6 cut(s) 218, 236, 531, 691, 701, 712
Lsp1109I GCAGC 4 cut(s) 51, 333, 375, 436
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 207, 701
MalI GATC 4 cut(s) 71, 271, 304, 516
MboI GATC 4 cut(s) 69, 269, 302, 514
MboII GAAGA 3 cut(s) 37, 290, 376
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 4 cut(s) 286, 391, 579, 656
MlyI GAGTC 2 cut(s) 465, 680
MnlI CCTC 8 cut(s) 21, 130, 149, 292, 346, 449, 679, 855
MroI TCCGGA 1 cut(s) 517
MseI TTAA 2 cut(s) 258, 329
MspI CCGG 2 cut(s) 518, 699
MspR9I CCNGG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 616
NdeII GATC 4 cut(s) 69, 269, 302, 514
NlaIII CATG 4 cut(s) 370, 650, 675, 735
NlaIV GGNNCC 3 cut(s) 516, 643, 644
NmeAIII GCCGAG 1 cut(s) 668
NspI RCATGY 2 cut(s) 370, 735
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 3 cut(s) 552, 597, 841
PkrI GCNGC 4 cut(s) 41, 323, 365, 426
Ple19I CGATCG 1 cut(s) 305
PleI GAGTC 2 cut(s) 465, 680
PpsI GAGTC 2 cut(s) 465, 680
PpuMI RGGWCCY 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 516, 643, 644
PspPI GGNCC 3 cut(s) 97, 168, 642
PspPPI RGGWCCY 1 cut(s) 642
PstI CTGCAG 2 cut(s) 41, 795
PstNI CAGNNNCTG 1 cut(s) 600
PsuI RGATCY 1 cut(s) 514
PvuI CGATCG 1 cut(s) 305
RsaI GTAC 3 cut(s) 314, 371, 664
RsaNI GTAC 3 cut(s) 313, 370, 663
SalI GTCGAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 258, 329
SatI GCNGC 4 cut(s) 40, 322, 364, 425
Sau3AI GATC 4 cut(s) 69, 269, 302, 514
Sau96I GGNCC 3 cut(s) 97, 168, 642
SchI GAGTC 2 cut(s) 465, 680
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 1 cut(s) 790
SetI ASST 6 cut(s) 81, 170, 229, 326, 357, 671
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 3 cut(s) 37, 601, 791
SgrDI CGTCGACG 1 cut(s) 173
SinI GGWCC 3 cut(s) 97, 168, 642
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 4 cut(s) 286, 391, 579, 656
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 54, 638
SspMI CTAG 1 cut(s) 276
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 6 cut(s) 174, 268, 301, 351, 359, 555
TaqII GACCGA 1 cut(s) 295
TasI AATT 4 cut(s) 286, 391, 579, 656
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 3 cut(s) 552, 597, 841
Tru1I TTAA 2 cut(s) 258, 329
Tru9I TTAA 2 cut(s) 258, 329
TscAI CASTG 3 cut(s) 196, 752, 795
TseI GCWGC 4 cut(s) 39, 321, 363, 424
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 2 cut(s) 131, 160
TspRI CASTG 3 cut(s) 196, 752, 795
VneI GTGCAC 1 cut(s) 786
VpaK11BI GGWCC 3 cut(s) 97, 168, 642
XagI CCTNNNNNAGG 2 cut(s) 83, 163
XapI RAATTY 2 cut(s) 286, 391
XceI RCATGY 2 cut(s) 370, 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.