RchiOBHm_Chr2g0085201

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000125
Physical Location & Seq
Reverse (-)
730466 .. 731609
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46076

Sequence Viewer

Length: 894 bp
ATGCATCACCCGCTCCCCCTCAACTTATCCTGTGCAGACCTACCGAGCTTGCATTCCCTTCATTACGACCATTCCAATGCCCAAGGTGCTCAACTTAATGCAAGAGATATTTTGCACTCATCCAATCCCGTCGAGTACAGTCTATATTTTGTTTTCTGCAACTTGTTTTGCATCAGACGCGATCCTGCACTCAGCTTCTTGATCAATCCTTTTCAGGGAGAAGTTCTAAGGCTCCCACCCAGTCAGCAAGTTTGTGGTCCATATTCCAAAGTGCAGTTTGTTTGGACTGGTATGGGATTTGATAGTATAACCAACACCTACAAGATTCTTCGTGTTACACAGATCGGCATTTCTACAACATTTGTATCCCAAGTGCTTATACTCGGCACAAGCGAATGGCGGCAGGTACCCTCAACTCCACCTGTTCAGGGTTTATTAGATTGCTCCAGGCATATATGTGCAAATGGAGATATGCATTGGTTTTTTTTTGATACAGGAACAACCCGTATACTTTCTTTTGACTTCAAGAAAGAAGAGTTCTTTTGGACTCCCAATCCCTACATATTCCCATATCCGACCTGGAAATTACACTTGATTAATTTTAGAGGATCTATGGCCATCGTGGATGCTTCATCAGGTATGAATATTGAGATATGGGTGATGAAAGATTACAATAAAAAACAGTGGATTCTCGATTATTCCATCAATATCCACATGCTTGAATTAGATCCTGAATTTGATTTTATTTGGGCTGTTTGTTGTGAATGGGAGCATGGCATACTTTTCATAGATGAACCGGCCACAATAACATTGTTTTTGGATCTAAGACAACCTGTTGTCACCAGGAATCTTTTCAAACGTCCAAATAAGGAGTGTGATTTGGTGTCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

297

Amino Acids

34.41

Weight (kDa)

5.74

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 39 - 274 2.6e-16 F-box associated beta propeller domain
FBA_3 PF08268 44 - 248 4.4e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
Acc65I GGTACC 1 cut(s) 406
AccB1I GGYRCC 1 cut(s) 406
AccBSI CCGCTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 11, 400
AclWI GGATC 4 cut(s) 176, 616, 722, 828
AcoI YGGCCR 2 cut(s) 615, 798
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 2 cut(s) 137, 408
AfiI CCNNNNNNNGG 2 cut(s) 215, 428
AgsI TTSAA 3 cut(s) 526, 722, 856
AjnI CCWGG 3 cut(s) 446, 578, 842
AluBI AGCT 2 cut(s) 48, 195
AluI AGCT 2 cut(s) 48, 195
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 4 cut(s) 176, 616, 722, 828
AoxI GGCC 2 cut(s) 615, 798
ApoI RAATTY 1 cut(s) 734
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 851
Asp718I GGTACC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 670, 832
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BalI TGGCCA 1 cut(s) 617
BanI GGYRCC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 2 cut(s) 626, 710
BciT130I CCWGG 3 cut(s) 448, 580, 844
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 3 cut(s) 448, 580, 844
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 233, 408
BmrFI CCNGG 3 cut(s) 448, 580, 844
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 13, 180, 616
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 428
Bse118I RCCGGY 1 cut(s) 796
Bse1I ACTGG 2 cut(s) 240, 292
BseBI CCWGG 3 cut(s) 448, 580, 844
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 119, 631
BseLI CCNNNNNNNGG 2 cut(s) 215, 428
BseMII CTCAG 2 cut(s) 205, 879
BseNI ACTGG 2 cut(s) 240, 292
BsgI GTGCAG 3 cut(s) 54, 171, 293
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 617, 800
BshNI GGYRCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 797
BslI CCNNNNNNNGG 2 cut(s) 215, 428
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 2 cut(s) 617, 800
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 6 cut(s) 181, 201, 342, 608, 727, 820
BspACI CCGC 2 cut(s) 11, 400
BspANI GGCC 2 cut(s) 617, 800
BspCNI CTCAG 2 cut(s) 204, 880
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 233, 408
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 4 cut(s) 176, 616, 722, 828
BspT107I GGYRCC 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 796
BsrI ACTGG 2 cut(s) 240, 292
BssAI RCCGGY 1 cut(s) 796
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 6 cut(s) 181, 201, 342, 608, 727, 820
BssNAI GTATAC 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 82
Bst1107I GTATAC 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 448, 580, 844
Bst4CI ACNGT 2 cut(s) 140, 684
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 4 cut(s) 191, 227, 824, 888
BstF5I GGATG 2 cut(s) 119, 631
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 6 cut(s) 184, 204, 345, 611, 730, 823
BstMBI GATC 6 cut(s) 181, 201, 342, 608, 727, 820
BstMWI GCNNNNNNNGC 3 cut(s) 10, 86, 177
BstNI CCWGG 3 cut(s) 448, 580, 844
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 3 cut(s) 446, 578, 842
BstUI CGCG 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 608, 727, 820
BstYI RGATCY 3 cut(s) 608, 727, 820
BstZ17I GTATAC 1 cut(s) 509
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 617, 800
BtsCI GGATG 2 cut(s) 119, 631
BtsIMutI CAGTG 1 cut(s) 689
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 136, 407
CviAII CATG 2 cut(s) 715, 773
CviJI RGCY 6 cut(s) 48, 195, 232, 617, 752, 800
CviKI_1 RGCY 6 cut(s) 48, 195, 232, 617, 752, 800
CviQI GTAC 2 cut(s) 136, 407
DdeI CTNAG 4 cut(s) 191, 227, 824, 888
DpnI GATC 6 cut(s) 183, 203, 344, 610, 729, 822
DpnII GATC 6 cut(s) 181, 201, 342, 608, 727, 820
EaeI YGGCCR 2 cut(s) 615, 798
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 446, 578, 842
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 2 cut(s) 6, 477
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 2 cut(s) 718, 776
FatI CATG 2 cut(s) 714, 772
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 2 cut(s) 106, 638
Fsp4HI GCNGC 1 cut(s) 401
GluI GCNGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 2 cut(s) 617, 800
HapII CCGG 1 cut(s) 797
HgaI GACGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 718, 776
HinfI GANTC 4 cut(s) 325, 547, 688, 847
HpaII CCGG 1 cut(s) 797
HphI GGTGA 2 cut(s) 670, 832
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 3 cut(s) 176, 576, 889
Hpy188III TCNNGA 4 cut(s) 199, 526, 692, 731
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 140, 684
HpyCH4IV ACGT 1 cut(s) 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 86, 177
HpyF3I CTNAG 4 cut(s) 191, 227, 824, 888
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 2 cut(s) 718, 776
KpnI GGTACC 1 cut(s) 410
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 6 cut(s) 181, 201, 342, 608, 727, 820
LmnI GCTCC 4 cut(s) 18, 237, 449, 769
LweI GCATC 3 cut(s) 13, 180, 616
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 2 cut(s) 334, 838
MalI GATC 6 cut(s) 183, 203, 344, 610, 729, 822
MbiI CCGCTC 1 cut(s) 13
MboI GATC 6 cut(s) 181, 201, 342, 608, 727, 820
MboII GAAGA 2 cut(s) 320, 545
MflI RGATCY 3 cut(s) 608, 727, 820
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 4 cut(s) 584, 598, 722, 734
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 3 cut(s) 29, 421, 599
Mox20I TGGCCA 1 cut(s) 617
Mph1103I ATGCAT 2 cut(s) 6, 477
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 1 cut(s) 617
MseI TTAA 2 cut(s) 96, 597
MslI CAYNNNNRTG 2 cut(s) 75, 456
Msp20I TGGCCA 1 cut(s) 617
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 3 cut(s) 448, 580, 844
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 3 cut(s) 448, 580, 844
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 10, 86, 177
NdeII GATC 6 cut(s) 181, 201, 342, 608, 727, 820
NlaIII CATG 2 cut(s) 718, 776
NlaIV GGNNCC 2 cut(s) 233, 408
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 2 cut(s) 6, 477
NspI RCATGY 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 3 cut(s) 325, 688, 847
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 597
Psp6I CCWGG 3 cut(s) 446, 578, 842
PspGI CCWGG 3 cut(s) 446, 578, 842
PspN4I GGNNCC 2 cut(s) 233, 408
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 3 cut(s) 608, 727, 820
RsaI GTAC 2 cut(s) 137, 408
RsaNI GTAC 2 cut(s) 136, 407
RseI CAYNNNNRTG 2 cut(s) 75, 456
SaqAI TTAA 2 cut(s) 96, 597
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 6 cut(s) 181, 201, 342, 608, 727, 820
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 3 cut(s) 448, 580, 844
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 3 cut(s) 13, 180, 616
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 75, 456
Sse9I AATT 4 cut(s) 584, 598, 722, 734
SsiI CCGC 2 cut(s) 11, 400
SspI AATATT 1 cut(s) 646
StyD4I CCNGG 3 cut(s) 446, 578, 842
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 140, 684
TaiI ACGT 1 cut(s) 862
TaqI TCGA 2 cut(s) 132, 693
TasI AATT 4 cut(s) 584, 598, 722, 734
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 3 cut(s) 325, 688, 847
Tru1I TTAA 2 cut(s) 96, 597
Tru9I TTAA 2 cut(s) 96, 597
TscAI CASTG 1 cut(s) 689
TseFI GTSAC 1 cut(s) 838
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 6 cut(s) 50, 621, 656, 677, 775, 807
TspRI CASTG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 851
Zsp2I ATGCAT 2 cut(s) 6, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.