RLG00000004425

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
59247248 .. 59248059
812 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004425

Sequence Viewer

Length: 705 bp
ATGCACAATCGCATACTAGCGGATAATAAAGCAGTTGTTGAAGCCCCTCAACTTATGTCCGTTGCTCACAAATGTGGATCAGAATTTTTGACTCTGCAACCGGTTAAGTGCGTGGGCAGCTCCTTGAGAAGAGACAAATATGCACTCAAGGTATCGAGCCGGAACTTATGTTTTGTCTTCTCCAACTTATTTTGCTTTAAATTGCATAAGAACGAACATTGCTTTTTAGTCAATCCTCTTAGGAGAAGGGAGGTTGTAAGGCTCCCAACAAGTAGTAACATACAACAACTTACAGAACCTTCGACTCCGAAATTGTTAGTTTATTGTTTCTATGGCATGGGATTCGACAAGAAAACTGACAAGCTGAAGATTGTTCGTGTGGGAAAATTAGATAGAGAAGAAAGTTGTACTGATATTACAATAGAGAAGTTCGTGGTCCATGTCCTTGAATTGGGTACAGCCTCATGGCTTGAGATATCCTCGGTTCTTCCCGAAGAGTTCGGTTGGACCCCTATTCCTCCCACACTGGATTTGACGAAGAAAATTCATTTGCGTGCTTTAAGAGGCGCTTTGACCATTTCGGCGACTTCATCACTAGATATGAGTCACATTGAGCTATGGGTGTTGAAAGAGTATGAGAAAAAAGTCTGGATGCGAGACTATGCTGTAGATGTCAATGTGTTCTGTGAGTCTCGATTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

235

Amino Acids

26.83

Weight (kDa)

8.98

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 2 cut(s) 83, 543
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 2 cut(s) 409, 457
AfiI CCNNNNNNNGG 1 cut(s) 451
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 41, 449, 628
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 3 cut(s) 120, 364, 616
AluI AGCT 3 cut(s) 120, 364, 616
Alw26I GTCTC 3 cut(s) 126, 651, 696
AlwI GGATC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 83, 543
AsiGI ACCGGT 1 cut(s) 100
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 436, 507
AvaII GGWCC 2 cut(s) 436, 507
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcoDI GTCTC 3 cut(s) 126, 651, 696
BfaI CTAG 2 cut(s) 17, 596
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 570
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 436, 507
BmgT120I GGNCC 2 cut(s) 436, 507
BmiI GGNNCC 2 cut(s) 263, 509
BmsI GCATC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuEI CTTGAG 3 cut(s) 131, 145, 491
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 531
BseXI GCAGC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 100
BsiSI CCGG 2 cut(s) 101, 160
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 3 cut(s) 126, 651, 696
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 263, 509
BspPI GGATC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 124, 489
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 3 cut(s) 126, 651, 696
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 555
CfoI GCGC 1 cut(s) 569
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 436, 507
Csp6I GTAC 2 cut(s) 408, 456
CspAI ACCGGT 1 cut(s) 100
CviAII CATG 3 cut(s) 337, 440, 465
CviJI RGCY 8 cut(s) 44, 120, 159, 262, 364, 461, 469, 616
CviKI_1 RGCY 8 cut(s) 44, 120, 159, 262, 364, 461, 469, 616
CviQI GTAC 2 cut(s) 408, 456
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 124, 489
EarI CTCTTC 2 cut(s) 124, 489
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 436, 507
Eco57I CTGAAG 1 cut(s) 386
EcoRV GATATC 1 cut(s) 477
FaeI CATG 3 cut(s) 340, 443, 468
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FatI CATG 3 cut(s) 336, 439, 464
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 664
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 2 cut(s) 17, 596
GlaI GCGC 1 cut(s) 568
GluI GCNGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 570
HapII CCGG 2 cut(s) 101, 160
HhaI GCGC 1 cut(s) 569
Hin1II CATG 3 cut(s) 340, 443, 468
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HinfI GANTC 5 cut(s) 91, 304, 342, 604, 689
HpaII CCGG 2 cut(s) 101, 160
Hpy188I TCNGA 2 cut(s) 82, 309
Hpy188III TCNNGA 3 cut(s) 491, 649, 693
HpyAV CCTTC 2 cut(s) 240, 309
HpyCH4V TGCA 4 cut(s) 4, 97, 143, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 3 cut(s) 340, 443, 468
HspAI GCGC 1 cut(s) 567
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 125, 267
LpnPI CCDG 4 cut(s) 114, 173, 512, 634
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 642
MaeI CTAG 2 cut(s) 17, 596
MaeIII GTNAC 2 cut(s) 275, 605
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 7 cut(s) 141, 169, 379, 410, 479, 506, 550
MluCI AATT 6 cut(s) 83, 200, 311, 386, 449, 543
MlyI GAGTC 4 cut(s) 85, 298, 613, 698
MmeI TCCRAC 2 cut(s) 207, 485
MnlI CCTC 7 cut(s) 57, 244, 246, 472, 490, 528, 557
MseI TTAA 3 cut(s) 105, 198, 560
MslI CAYNNNNRTG 2 cut(s) 72, 552
MspI CCGG 2 cut(s) 101, 160
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 77
NlaIII CATG 3 cut(s) 340, 443, 468
NlaIV GGNNCC 2 cut(s) 263, 509
NmuCI GTSAC 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 72
PfeI GAWTC 1 cut(s) 342
PinAI ACCGGT 1 cut(s) 100
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 4 cut(s) 85, 298, 612, 697
PpsI GAGTC 4 cut(s) 85, 298, 612, 697
PspN4I GGNNCC 2 cut(s) 263, 509
PspPI GGNCC 2 cut(s) 436, 507
RsaI GTAC 2 cut(s) 409, 457
RsaNI GTAC 2 cut(s) 408, 456
RseI CAYNNNNRTG 2 cut(s) 72, 552
SaqAI TTAA 3 cut(s) 105, 198, 560
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 436, 507
SchI GAGTC 4 cut(s) 85, 298, 613, 698
SetI ASST 6 cut(s) 122, 153, 255, 301, 366, 618
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 2 cut(s) 436, 507
SmiMI CAYNNNNRTG 2 cut(s) 72, 552
SmlI CTYRAG 3 cut(s) 124, 146, 470
SmoI CTYRAG 3 cut(s) 124, 146, 470
Sse9I AATT 6 cut(s) 83, 200, 311, 386, 449, 543
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 17, 596
TaqI TCGA 4 cut(s) 155, 302, 345, 694
TasI AATT 6 cut(s) 83, 200, 311, 386, 449, 543
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 3 cut(s) 105, 198, 560
Tru9I TTAA 3 cut(s) 105, 198, 560
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 2 cut(s) 536, 579
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 2 cut(s) 436, 507
XapI RAATTY 2 cut(s) 83, 543
XspI CTAG 2 cut(s) 17, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.