DNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FBA_1 | PF07734 | 4 - 275 | 5.7e-08 | F-box associated beta propeller domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 707 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 76 |
| AccI | GTMKAC | 1 cut(s) | 120 |
| AciI | CCGC | 3 cut(s) | 112, 440, 744 |
| AclWI | GGATC | 2 cut(s) | 540, 741 |
| AcoI | YGGCCR | 1 cut(s) | 418 |
| AcsI | RAATTY | 3 cut(s) | 375, 490, 895 |
| AcuI | CTGAAG | 1 cut(s) | 334 |
| AfaI | GTAC | 3 cut(s) | 200, 596, 721 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 76, 215, 484, 649 |
| AgsI | TTSAA | 5 cut(s) | 460, 556, 661, 694, 851 |
| AjiI | CACGTC | 1 cut(s) | 879 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 636, 668 |
| AleI | CACNNNNGTG | 1 cut(s) | 705 |
| AluBI | AGCT | 2 cut(s) | 73, 405 |
| AluI | AGCT | 2 cut(s) | 73, 405 |
| Alw21I | GWGCWC | 1 cut(s) | 791 |
| Alw26I | GTCTC | 2 cut(s) | 49, 393 |
| Alw44I | GTGCAC | 1 cut(s) | 787 |
| AlwI | GGATC | 2 cut(s) | 540, 741 |
| AoxI | GGCC | 3 cut(s) | 78, 418, 507 |
| ApaLI | GTGCAC | 1 cut(s) | 787 |
| ApeKI | GCWGC | 1 cut(s) | 66 |
| ApoI | RAATTY | 3 cut(s) | 375, 490, 895 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 745 |
| AspLEI | GCGC | 1 cut(s) | 679 |
| AspS9I | GGNCC | 2 cut(s) | 79, 192 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 239 |
| AvaII | GGWCC | 1 cut(s) | 192 |
| BaeGI | GKGCMC | 1 cut(s) | 791 |
| BanI | GGYRCC | 1 cut(s) | 707 |
| BauI | CACGAG | 1 cut(s) | 106 |
| Bbv12I | GWGCWC | 1 cut(s) | 791 |
| BbvI | GCAGC | 1 cut(s) | 78 |
| BccI | CCATC | 2 cut(s) | 230, 781 |
| BceAI | ACGGC | 3 cut(s) | 184, 405, 697 |
| BciVI | GTATCC | 3 cut(s) | 216, 421, 622 |
| BcoDI | GTCTC | 2 cut(s) | 49, 393 |
| BfmI | CTRYAG | 2 cut(s) | 61, 882 |
| BfuI | GTATCC | 3 cut(s) | 216, 421, 622 |
| BisI | GCNGC | 1 cut(s) | 67 |
| BlsI | GCNGC | 1 cut(s) | 68 |
| Bme18I | GGWCC | 1 cut(s) | 192 |
| BmgBI | CACGTC | 1 cut(s) | 879 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 192 |
| BmiI | GGNNCC | 3 cut(s) | 654, 709, 748 |
| BmsI | GCATC | 3 cut(s) | 265, 508, 804 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 107, 139, 616, 648 |
| BpuEI | CTTGAG | 4 cut(s) | 14, 560, 611, 820 |
| BsaBI | GATNNNNATC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 2 cut(s) | 421, 510 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 76, 215, 484, 649 |
| Bse8I | GATNNNNATC | 1 cut(s) | 309 |
| BseDI | CCNNGG | 2 cut(s) | 421, 510 |
| BseGI | GGATG | 1 cut(s) | 773 |
| BseJI | GATNNNNATC | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 76, 215, 484, 649 |
| BseMII | CTCAG | 1 cut(s) | 138 |
| BseRI | GAGGAG | 2 cut(s) | 372, 374 |
| BseSI | GKGCMC | 1 cut(s) | 791 |
| BseXI | GCAGC | 1 cut(s) | 78 |
| BshFI | GGCC | 3 cut(s) | 80, 420, 509 |
| BshNI | GGYRCC | 1 cut(s) | 707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 791 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 76, 215, 484, 649 |
| BsmAI | GTCTC | 2 cut(s) | 49, 393 |
| BsnI | GGCC | 3 cut(s) | 80, 420, 509 |
| Bsp1286I | GDGCHC | 1 cut(s) | 791 |
| Bsp143I | GATC | 4 cut(s) | 33, 310, 532, 733 |
| BspACI | CCGC | 3 cut(s) | 112, 440, 744 |
| BspANI | GGCC | 3 cut(s) | 80, 420, 509 |
| BspCNI | CTCAG | 1 cut(s) | 137 |
| BspHI | TCATGA | 1 cut(s) | 909 |
| BspLI | GGNNCC | 3 cut(s) | 654, 709, 748 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspPI | GGATC | 2 cut(s) | 540, 741 |
| BspT107I | GGYRCC | 1 cut(s) | 707 |
| BssECI | CCNNGG | 2 cut(s) | 421, 510 |
| BssMI | GATC | 4 cut(s) | 33, 310, 532, 733 |
| BssSI | CACGAG | 1 cut(s) | 106 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2BI | CACGAG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 1 cut(s) | 784 |
| BstC8I | GCNNGC | 1 cut(s) | 71 |
| BstDEI | CTNAG | 3 cut(s) | 124, 737, 827 |
| BstDSI | CCRYGG | 1 cut(s) | 421 |
| BstF5I | GGATG | 1 cut(s) | 773 |
| BstHHI | GCGC | 1 cut(s) | 679 |
| BstKTI | GATC | 4 cut(s) | 36, 313, 535, 736 |
| BstMAI | GTCTC | 2 cut(s) | 49, 393 |
| BstMBI | GATC | 4 cut(s) | 33, 310, 532, 733 |
| BstNSI | RCATGY | 1 cut(s) | 178 |
| BstSFI | CTRYAG | 2 cut(s) | 61, 882 |
| BstSLI | GKGCMC | 1 cut(s) | 791 |
| BstV1I | GCAGC | 1 cut(s) | 78 |
| BstX2I | RGATCY | 1 cut(s) | 733 |
| BstYI | RGATCY | 1 cut(s) | 733 |
| BsuI | GTATCC | 3 cut(s) | 216, 421, 622 |
| BsuRI | GGCC | 3 cut(s) | 80, 420, 509 |
| BtgI | CCRYGG | 1 cut(s) | 421 |
| BtrI | CACGTC | 1 cut(s) | 879 |
| BtsCI | GGATG | 1 cut(s) | 773 |
| Cac8I | GCNNGC | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 909 |
| CfoI | GCGC | 1 cut(s) | 679 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 192 |
| Csp6I | GTAC | 3 cut(s) | 199, 595, 720 |
| CviAII | CATG | 4 cut(s) | 89, 175, 566, 910 |
| CviJI | RGCY | 8 cut(s) | 69, 73, 80, 184, 326, 405, 420, 509 |
| CviKI_1 | RGCY | 8 cut(s) | 69, 73, 80, 184, 326, 405, 420, 509 |
| CviQI | GTAC | 3 cut(s) | 199, 595, 720 |
| DdeI | CTNAG | 3 cut(s) | 124, 737, 827 |
| DpnI | GATC | 4 cut(s) | 35, 312, 534, 735 |
| DpnII | GATC | 4 cut(s) | 33, 310, 532, 733 |
| EaeI | YGGCCR | 1 cut(s) | 418 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco47I | GGWCC | 1 cut(s) | 192 |
| Eco57I | CTGAAG | 1 cut(s) | 334 |
| EcoRI | GAATTC | 1 cut(s) | 375 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| EcoT22I | ATGCAT | 1 cut(s) | 180 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 4 cut(s) | 92, 178, 569, 913 |
| FatI | CATG | 4 cut(s) | 88, 174, 565, 909 |
| FauI | CCCGC | 1 cut(s) | 105 |
| FblI | GTMKAC | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 1 cut(s) | 67 |
| FokI | GGATG | 1 cut(s) | 760 |
| Fsp4HI | GCNGC | 1 cut(s) | 67 |
| GlaI | GCGC | 1 cut(s) | 678 |
| GluI | GCNGC | 1 cut(s) | 67 |
| HaeIII | GGCC | 3 cut(s) | 80, 420, 509 |
| HhaI | GCGC | 1 cut(s) | 679 |
| Hin1II | CATG | 4 cut(s) | 92, 178, 569, 913 |
| Hin6I | GCGC | 1 cut(s) | 677 |
| HinP1I | GCGC | 1 cut(s) | 677 |
| HincII | GTYRAC | 1 cut(s) | 447 |
| HindII | GTYRAC | 1 cut(s) | 447 |
| HinfI | GANTC | 3 cut(s) | 122, 574, 586 |
| HphI | GGTGA | 2 cut(s) | 230, 239 |
| Hpy166II | GTNNAC | 4 cut(s) | 121, 447, 789, 904 |
| Hpy188I | TCNGA | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 7 cut(s) | 31, 48, 539, 578, 590, 799, 910 |
| Hpy8I | GTNNAC | 4 cut(s) | 121, 447, 789, 904 |
| Hpy99I | CGWCG | 2 cut(s) | 154, 757 |
| HpyAV | CCTTC | 2 cut(s) | 352, 881 |
| HpyCH4III | ACNGT | 1 cut(s) | 784 |
| HpyCH4IV | ACGT | 1 cut(s) | 878 |
| HpyCH4V | TGCA | 4 cut(s) | 178, 789, 869, 884 |
| HpyF3I | CTNAG | 3 cut(s) | 124, 737, 827 |
| HpySE526I | ACGT | 1 cut(s) | 878 |
| Hsp92II | CATG | 4 cut(s) | 92, 178, 569, 913 |
| HspAI | GCGC | 1 cut(s) | 677 |
| Kzo9I | GATC | 4 cut(s) | 33, 310, 532, 733 |
| LpnPI | CCDG | 8 cut(s) | 33, 59, 83, 170, 435, 450, 805, 877 |
| Lsp1109I | GCAGC | 1 cut(s) | 78 |
| LweI | GCATC | 3 cut(s) | 265, 508, 804 |
| MaeII | ACGT | 1 cut(s) | 878 |
| MaeIII | GTNAC | 2 cut(s) | 16, 525 |
| MalI | GATC | 4 cut(s) | 35, 312, 534, 735 |
| MboI | GATC | 4 cut(s) | 33, 310, 532, 733 |
| MboII | GAAGA | 1 cut(s) | 568 |
| MflI | RGATCY | 1 cut(s) | 733 |
| MhlI | GDGCHC | 1 cut(s) | 791 |
| MluCI | AATT | 9 cut(s) | 139, 265, 375, 490, 559, 615, 764, 832, 895 |
| MlyI | GAGTC | 2 cut(s) | 116, 595 |
| Mph1103I | ATGCAT | 1 cut(s) | 180 |
| MroXI | GAANNNNTTC | 1 cut(s) | 745 |
| MseI | TTAA | 2 cut(s) | 143, 213 |
| MslI | CAYNNNNRTG | 1 cut(s) | 705 |
| MspA1I | CMGCKG | 2 cut(s) | 73, 440 |
| NdeII | GATC | 4 cut(s) | 33, 310, 532, 733 |
| NlaIII | CATG | 4 cut(s) | 92, 178, 569, 913 |
| NlaIV | GGNNCC | 3 cut(s) | 654, 709, 748 |
| NmuCI | GTSAC | 1 cut(s) | 525 |
| NsiI | ATGCAT | 1 cut(s) | 180 |
| NspI | RCATGY | 1 cut(s) | 178 |
| OliI | CACNNNNGTG | 1 cut(s) | 705 |
| PagI | TCATGA | 1 cut(s) | 909 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 168, 207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 745 |
| PfeI | GAWTC | 1 cut(s) | 574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 76 |
| PkrI | GCNGC | 1 cut(s) | 68 |
| PleI | GAGTC | 2 cut(s) | 116, 594 |
| PpsI | GAGTC | 2 cut(s) | 116, 594 |
| PspN4I | GGNNCC | 3 cut(s) | 654, 709, 748 |
| PspPI | GGNCC | 2 cut(s) | 79, 192 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 111, 143 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| PsuI | RGATCY | 1 cut(s) | 733 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RsaI | GTAC | 3 cut(s) | 200, 596, 721 |
| RsaNI | GTAC | 3 cut(s) | 199, 595, 720 |
| RseI | CAYNNNNRTG | 1 cut(s) | 705 |
| SaqAI | TTAA | 2 cut(s) | 143, 213 |
| SatI | GCNGC | 1 cut(s) | 67 |
| Sau3AI | GATC | 4 cut(s) | 33, 310, 532, 733 |
| Sau96I | GGNCC | 2 cut(s) | 79, 192 |
| SchI | GAGTC | 2 cut(s) | 116, 595 |
| SduI | GDGCHC | 1 cut(s) | 791 |
| SfaNI | GCATC | 3 cut(s) | 265, 508, 804 |
| SfcI | CTRYAG | 2 cut(s) | 61, 882 |
| SinI | GGWCC | 1 cut(s) | 192 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 705 |
| SmlI | CTYRAG | 4 cut(s) | 29, 539, 590, 799 |
| SmoI | CTYRAG | 4 cut(s) | 29, 539, 590, 799 |
| Sse9I | AATT | 9 cut(s) | 139, 265, 375, 490, 559, 615, 764, 832, 895 |
| SsiI | CCGC | 3 cut(s) | 112, 440, 744 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaaI | ACNGT | 1 cut(s) | 784 |
| TaiI | ACGT | 1 cut(s) | 881 |
| TaqI | TCGA | 2 cut(s) | 313, 345 |
| TasI | AATT | 9 cut(s) | 139, 265, 375, 490, 559, 615, 764, 832, 895 |
| TatI | WGTACW | 2 cut(s) | 594, 719 |
| TfiI | GAWTC | 1 cut(s) | 574 |
| Tru1I | TTAA | 2 cut(s) | 143, 213 |
| Tru9I | TTAA | 2 cut(s) | 143, 213 |
| TseFI | GTSAC | 1 cut(s) | 525 |
| TseI | GCWGC | 1 cut(s) | 66 |
| Tsp45I | GTSAC | 1 cut(s) | 525 |
| TspDTI | ATGAA | 2 cut(s) | 77, 711 |
| TspGWI | ACGGA | 2 cut(s) | 29, 717 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 76 |
| VneI | GTGCAC | 1 cut(s) | 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 192 |
| XapI | RAATTY | 3 cut(s) | 375, 490, 895 |
| XceI | RCATGY | 1 cut(s) | 178 |
| XmiI | GTMKAC | 1 cut(s) | 120 |
| XmnI | GAANNNNTTC | 1 cut(s) | 745 |
| Zsp2I | ATGCAT | 1 cut(s) | 180 |