RLG00000005350

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
67001209 .. 67002274
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005350

Sequence Viewer

Length: 711 bp
ATGCAGATGTTGAGATCACTTGATTTTGGTATGAGCCCTGTTACCGAAGTACCTCAACCTCAACTTATGCTTTACACTCGGTCTCTAATGCCGAGGCATCAATTTATACACTTGCGACCTTTGAAATACAATGGCGACTCTGCCTTGACAAACTCTGACTATAATCTCCTTGTTTCAAATATTTGGTCCCAATCTATCTACGTACTGGAATTCTTTTTTCAGAACCTGTTTGTCTTTAAAATTTTGCGATTGTTTGGAGATGGTCCATGCTTCTTACTCAATCCTTTTAGGGGAGAGGTCCTAAAGATCCCAACGACAGAGACGAATTCAATGAAAGACAAGCAATCCAAAGGATTGGCATGGGATTCAAAGAACAACCAACTGGCGGCCAATGTTCATGTATTGGGTCAAAACTCATGCTCATGGCGAGAAATACAAGCAGTTCCTCCTTGCGGCTTAAGCCATATAAATAAAGAGAAGTTTTATTGGACTCCTCATCCTGTAAGACTTTTACAGGAGATGTACAAGTTGCTTTTTATCACACTATCACTTGCTCATTCTGAAAGGAGCTATGACCCTTGTGGATGCATCAGGAAACGTACTTCCATCAAACGTGTAGATTATAATGTAAGGAGTGGGTTTGATAAGAGAGTCTTTAGTTACACAGGAAGCCTTATTTCCTTGAAAGGTCTCGGTGATTTAGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

237

Amino Acids

27.23

Weight (kDa)

9.47

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AciI CCGC 2 cut(s) 386, 453
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 3 cut(s) 209, 240, 325
AfaI GTAC 4 cut(s) 51, 204, 524, 601
AfiI CCNNNNNNNGG 3 cut(s) 290, 385, 452
AflII CTTAAG 1 cut(s) 457
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 6 cut(s) 124, 177, 330, 369, 685, 707
AluBI AGCT 1 cut(s) 570
AluI AGCT 1 cut(s) 570
Alw26I GTCTC 3 cut(s) 87, 314, 695
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 387
ApoI RAATTY 3 cut(s) 209, 240, 325
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 3 cut(s) 186, 263, 298
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 3 cut(s) 186, 263, 298
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
BanII GRGCYC 1 cut(s) 38
BccI CCATC 2 cut(s) 254, 614
BcoDI GTCTC 3 cut(s) 87, 314, 695
BfrI CTTAAG 1 cut(s) 457
BisI GCNGC 2 cut(s) 387, 454
BlsI GCNGC 2 cut(s) 388, 455
Bme18I GGWCC 3 cut(s) 186, 263, 298
BmgT120I GGNCC 3 cut(s) 186, 263, 298
BmiI GGNNCC 1 cut(s) 188
BmsI GCATC 3 cut(s) 106, 575, 597
BsaAI YACGTR 1 cut(s) 202
BsaI GGTCTC 2 cut(s) 87, 695
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 385, 452
Bse1I ACTGG 2 cut(s) 210, 387
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 496, 590
BseLI CCNNNNNNNGG 3 cut(s) 290, 385, 452
BseNI ACTGG 2 cut(s) 210, 387
BseRI GAGGAG 1 cut(s) 483
BshFI GGCC 1 cut(s) 389
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 290, 385, 452
BsmAI GTCTC 3 cut(s) 87, 314, 695
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 389
Bso31I GGTCTC 2 cut(s) 87, 695
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 2 cut(s) 14, 306
BspACI CCGC 2 cut(s) 386, 453
BspANI GGCC 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 457
BspTNI GGTCTC 2 cut(s) 87, 695
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 2 cut(s) 210, 387
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 14, 306
BstAFI CTTAAG 1 cut(s) 457
BstAUI TGTACA 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 202
BstF5I GGATG 2 cut(s) 496, 590
BstKTI GATC 2 cut(s) 17, 309
BstMAI GTCTC 3 cut(s) 87, 314, 695
BstMBI GATC 2 cut(s) 14, 306
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstSNI TACGTA 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 306
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 2 cut(s) 496, 590
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 186, 263, 298
Csp6I GTAC 4 cut(s) 50, 203, 523, 600
CviAII CATG 5 cut(s) 267, 360, 398, 417, 423
CviJI RGCY 6 cut(s) 36, 389, 456, 462, 570, 672
CviKI_1 RGCY 6 cut(s) 36, 389, 456, 462, 570, 672
CviQI GTAC 4 cut(s) 50, 203, 523, 600
DpnI GATC 2 cut(s) 16, 308
DpnII GATC 2 cut(s) 14, 306
DraI TTTAAA 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 387
Eco105I TACGTA 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 2 cut(s) 87, 695
Eco47I GGWCC 3 cut(s) 186, 263, 298
EcoO109I RGGNCCY 1 cut(s) 298
EcoRI GAATTC 2 cut(s) 209, 325
EcoT22I ATGCAT 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 5 cut(s) 270, 363, 401, 420, 426
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 172
FatI CATG 5 cut(s) 266, 359, 397, 416, 422
Fnu4HI GCNGC 2 cut(s) 387, 454
FokI GGATG 2 cut(s) 483, 597
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 387, 454
GluI GCNGC 2 cut(s) 387, 454
HaeIII GGCC 1 cut(s) 389
Hin1II CATG 5 cut(s) 270, 363, 401, 420, 426
HinfI GANTC 4 cut(s) 137, 365, 490, 651
HphI GGTGA 1 cut(s) 707
Hpy188I TCNGA 3 cut(s) 157, 222, 562
Hpy188III TCNNGA 1 cut(s) 592
HpyCH4IV ACGT 3 cut(s) 201, 598, 613
HpyCH4V TGCA 2 cut(s) 4, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 201, 598, 613
Hsp92II CATG 5 cut(s) 270, 363, 401, 420, 426
Kzo9I GATC 2 cut(s) 14, 306
LmnI GCTCC 1 cut(s) 567
LpnPI CCDG 8 cut(s) 51, 191, 239, 368, 500, 513, 577, 651
LweI GCATC 3 cut(s) 106, 575, 597
MaeII ACGT 3 cut(s) 201, 598, 613
MaeIII GTNAC 2 cut(s) 40, 659
MalI GATC 2 cut(s) 16, 308
MboI GATC 2 cut(s) 14, 306
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 4 cut(s) 101, 209, 240, 325
MlyI GAGTC 3 cut(s) 131, 484, 660
MnlI CCTC 6 cut(s) 63, 69, 87, 289, 456, 504
Mph1103I ATGCAT 1 cut(s) 590
MseI TTAA 2 cut(s) 237, 458
MslI CAYNNNNRTG 1 cut(s) 421
MspCI CTTAAG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 459
NdeII GATC 2 cut(s) 14, 306
NlaIII CATG 5 cut(s) 270, 363, 401, 420, 426
NlaIV GGNNCC 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 2 cut(s) 388, 455
PleI GAGTC 3 cut(s) 131, 484, 659
PpsI GAGTC 3 cut(s) 131, 484, 659
Ppu21I YACGTR 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 298
PsiI TTATAA 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 186, 263, 298
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 4 cut(s) 51, 204, 524, 601
RsaNI GTAC 4 cut(s) 50, 203, 523, 600
RseI CAYNNNNRTG 1 cut(s) 421
SaqAI TTAA 2 cut(s) 237, 458
SatI GCNGC 2 cut(s) 387, 454
Sau3AI GATC 2 cut(s) 14, 306
Sau96I GGNCC 3 cut(s) 186, 263, 298
SchI GAGTC 3 cut(s) 131, 484, 660
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 3 cut(s) 106, 575, 597
SinI GGWCC 3 cut(s) 186, 263, 298
SmiMI CAYNNNNRTG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 4 cut(s) 101, 209, 240, 325
SsiI CCGC 2 cut(s) 386, 453
SspI AATATT 1 cut(s) 181
TaiI ACGT 3 cut(s) 204, 601, 616
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 101, 209, 240, 325
TatI WGTACW 1 cut(s) 522
TauI GCSGC 2 cut(s) 389, 456
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 2 cut(s) 237, 458
Tru9I TTAA 2 cut(s) 237, 458
TspDTI ATGAA 2 cut(s) 347, 386
Vha464I CTTAAG 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 186, 263, 298
XapI RAATTY 3 cut(s) 209, 240, 325
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.