Rroxscaffold_1G00073060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000125
Physical Location & Seq
Forward (+)
94051830 .. 94055966
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073060.1

Sequence Viewer

Length: 288 bp
ATGCCGAGTGCAAAGTTGACGGACCTCCCCGTTGATATTCTCATCGACGTCTTTTCGAGACTACCGGTCACATCTCTTTTACGATTGCAATGTGTCTCTAGGACAATCCGGCCGGCCCTTGTTGCCACGCATTTACGGTATAAGACAACCATTCAAGACTTGGAGCCGCCTCAACTTAGGGTTCTAAGTGTTGATCTTATATGGTCGCCCATGTACAAGCTCCTTTGTTTGCTTCAGTCGTCTCAGCTTCATTTTGACACTTCTCAATATTTGTTTCTTGAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

7.82

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 37 1.6e-07 F-box domain
F-box-like PF12937 7 - 37 3.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 155
AhdI GACNNNNNGTC 1 cut(s) 65
AluBI AGCT 3 cut(s) 220, 247, 283
AluI AGCT 3 cut(s) 220, 247, 283
Alw26I GTCTC 3 cut(s) 52, 100, 246
AoxI GGCC 2 cut(s) 110, 114
AsiGI ACCGGT 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 22, 115
AvaII GGWCC 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 52, 100, 246
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 22
BmeRI GACNNNNNGTC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 22, 115
BmiI GGNNCC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 64
Bse118I RCCGGY 2 cut(s) 64, 112
Bse3DI GCAATG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 112, 116
BshTI ACCGGT 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 3 cut(s) 65, 109, 113
BsmAI GTCTC 3 cut(s) 52, 100, 246
BsmBI CGTCTC 1 cut(s) 246
BsnI GGCC 2 cut(s) 112, 116
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 112, 116
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 2 cut(s) 64, 112
BsrGI TGTACA 1 cut(s) 213
BssAI RCCGGY 2 cut(s) 64, 112
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 176, 185, 243
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 3 cut(s) 52, 100, 246
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 284
BstZI CGGCCG 1 cut(s) 110
BsuRI GGCC 2 cut(s) 112, 116
Cac8I GCNNGC 1 cut(s) 114
Cfr10I RCCGGY 2 cut(s) 64, 112
Cfr13I GGNCC 2 cut(s) 22, 115
Csp6I GTAC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 112, 116, 166, 220, 247, 283
CviKI_1 RGCY 6 cut(s) 112, 116, 166, 220, 247, 283
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 176, 185, 243
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DriI GACNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 110
EagI CGGCCG 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 22
Eco52I CGGCCG 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 141, 200, 202, 212, 286
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 167
FseI GGCCGGCC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 167
HaeIII GGCC 2 cut(s) 112, 116
HapII CCGG 3 cut(s) 65, 109, 113
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HpaII CCGG 3 cut(s) 65, 109, 113
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 3 cut(s) 57, 155, 278
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 11, 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 3 cut(s) 176, 185, 243
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 214
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 163, 225
LpnPI CCDG 3 cut(s) 78, 122, 126
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MnlI CCTC 2 cut(s) 35, 180
MroNI GCCGGC 1 cut(s) 112
MspI CCGG 3 cut(s) 65, 109, 113
MwoI GCNNNNNNNGC 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 114
NdeII GATC 1 cut(s) 193
NgoMIV GCCGGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 22, 115
RigI GGCCGGCC 1 cut(s) 116
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 22, 115
SetI ASST 5 cut(s) 27, 51, 222, 249, 285
SfcI CTRYAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 269
SspMI CTAG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 45, 56
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 169
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 99
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.