MD11G1006900.v1.1

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000125
Physical Location & Seq
Forward (+)
641509 .. 646443
4935 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1006900.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGAAGCTCGAGAAGGAGAAACCCTTTGAGCTCTTGAAGGAGAAGAATGAGATCTTGAAGACCAAGGAGGAAGATCTAGCAATGAAGGGCCGAGAGCAAGACAAGCTTCAGATGGAGTTGAAGAAGCTGCAGAAGCTCAAGGAGTTCAAACCCACCGTGATGGAAATGGAAATGGATATGGATATGGTGAGGAGCAATCAGAGGAGATTGGGGCACTGCTGCATGAACAATGCAAGGCTGATGGAGCTCCCCATCGAAATCCTTGACAACATCTATTTGAGGCTACCCGTAAGCTGTCTTTTTACCCTCAGATGTGTCTCTAAGACATCAAAGAACATAGTCGACTGCCCTTGCTTTGTTACACAGCACATGCGACATTTACTTTCGGCACAATCTACTTTTGCTTCCGATCAGTTTATGCTTCTTCATCACCTTTTCTACGACTCTCTTTGTGGATTTGCCTTTACACCACTGAAATATGATGGCGTCAGCGCTGCCTTGAAGAGAAGCGAAGACTATGCAATCGTTTCTGATATTGTGTCCACAAAGATTGGTGTTTCTTATTCTTTGAGTTTTGTTTTCTACAACTTGTTTTTCTTTCGAGATCATGGCTATAGTCGTCAACCGTACAAGAAGAAAGAAAGAAGTCCATGCTTCTTATTCAATCCTTTAAAGGGAGAAGTTCTTCCACTCCCAACCACTGACATCCAATTTCCATATAGTTTTTATGGATCGTGCAAGGAATGGTATGGTATGGGATTTGATGATATAACCAGCACTTACAAGATTCTGTGTGTTTCTGGAGATGAAGATTCGACGAGATATCAACTTAGGGCCCAAATTTATGTACTAGGTACCGGCTCGTGGCGAGAGATACCCTCAGTCCCTCCTCGTAATTTGAGCAACAACCATGCATTTGCACATGGAGATCAGCATTGGTTGCTTTATTTACCTGATCACTCAAGTTATGATAATAGAAGAGTACTCGGTATATGTTCTTTTGACTATAAGAAAGAGGAGTTTTACTCGACTATTCCTCTTCCCGAGCACATGCAACGTAAGTATATTCCGCACTATATGGTCCTTTTGTCTCTACACTTGCTTAATCTTAAAGGATCTTTGGCCGTCGTGGACACTTTATCAGATGACTATATTGAGGTATGGGTGTTAAAGAACTATGATACAAAAGAATGGAGGCTAGATTACAAGATAGAAAACGCAATTGTCAGAGGCGAGCTTATTAACGTGACATGTTGTGAATGGAAGTATGGCATATTCTTCACTAAATCACAAGGGATGTCAGAAAGTAGAAGGATTACAATCTTTGTGGATTTTAGATGTGGCTCCATTAGTCATGTAAAGTTATTTCCACCCAAGCGCATCTGGAATACAAGCATCTTGAGCTATAATGGGACCTTAATGTCCCTAAAAAATTATGGGAAATTGGTGAGACCTGACCCTACTACTGGAAGCATCAGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
DUF4219 F-box FBA_3 Retrotran_gag_2

Protein Analysis

495

Amino Acids

57.61

Weight (kDa)

8.57

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 81 - 119 1.3e-06 F-box domain
FBA_3 PF08268 215 - 399 4.2e-21 F-box associated beta propeller domain
FBA_1 PF07734 219 - 398 2.5e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1420
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 342
AciI CCGC 1 cut(s) 1070
AclWI GGATC 2 cut(s) 739, 1123
AcoI YGGCCR 1 cut(s) 1122
AcsI RAATTY 1 cut(s) 840
AcuI CTGAAG 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 4 cut(s) 629, 849, 856, 984
AfeI AGCGCT 1 cut(s) 493
AfiI CCNNNNNNNGG 3 cut(s) 674, 864, 1466
AflIII ACRYGT 1 cut(s) 1250
AgsI TTSAA 6 cut(s) 37, 58, 121, 148, 502, 664
AluBI AGCT 9 cut(s) 7, 31, 106, 127, 136, 247, 294, 1237, 1404
AluI AGCT 9 cut(s) 7, 31, 106, 127, 136, 247, 294, 1237, 1404
Alw21I GWGCWC 3 cut(s) 33, 249, 1050
Alw26I GTCTC 3 cut(s) 322, 1095, 1444
AlwI GGATC 2 cut(s) 739, 1123
Ama87I CYCGRG 2 cut(s) 8, 1043
Aor51HI AGCGCT 1 cut(s) 493
AoxI GGCC 3 cut(s) 88, 834, 1122
ApaI GGGCCC 1 cut(s) 838
ApeKI GCWGC 3 cut(s) 127, 219, 494
ApoI RAATTY 1 cut(s) 840
Asp700I GAANNNNTTC 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 2 cut(s) 494, 1380
AspS9I GGNCC 5 cut(s) 88, 834, 835, 1081, 1413
AsuHPI GGTGA 3 cut(s) 199, 422, 1459
AvaI CYCGRG 2 cut(s) 8, 1043
AvaII GGWCC 2 cut(s) 1081, 1413
BaeGI GKGCMC 2 cut(s) 216, 838
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 3 cut(s) 33, 249, 838
BauI CACGAG 1 cut(s) 862
BbsI GAAGAC 2 cut(s) 65, 519
Bbv12I GWGCWC 3 cut(s) 33, 249, 1050
BbvI GCAGC 3 cut(s) 114, 206, 481
BccI CCATC 5 cut(s) 106, 154, 235, 260, 476
BceAI ACGGC 1 cut(s) 1109
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 3 cut(s) 322, 1095, 1444
BfaI CTAG 4 cut(s) 77, 851, 1199, 1483
BfmI CTRYAG 2 cut(s) 128, 613
BfoI RGCGCY 1 cut(s) 495
BglII AGATCT 2 cut(s) 51, 73
BisI GCNGC 3 cut(s) 128, 220, 495
BlsI GCNGC 3 cut(s) 129, 221, 496
BmcAI AGTACT 1 cut(s) 984
Bme18I GGWCC 2 cut(s) 1081, 1413
BmeT110I CYCGRG 2 cut(s) 8, 1043
BmgT120I GGNCC 5 cut(s) 88, 834, 835, 1081, 1413
BmiI GGNNCC 4 cut(s) 836, 856, 1345, 1414
BmsI GCATC 2 cut(s) 1389, 1404
BpiI GAAGAC 2 cut(s) 65, 519
BplI GAGNNNNNCTC 4 cut(s) 863, 895, 1010, 1042
BpmI CTGGAG 1 cut(s) 822
BpuEI CTTGAG 3 cut(s) 122, 946, 1420
BsaBI GATNNNNATC 1 cut(s) 1319
BsaHI GRCGYC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 1444
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 674, 864, 1466
Bse118I RCCGGY 1 cut(s) 857
Bse1I ACTGG 1 cut(s) 1471
Bse3DI GCAATG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 1319
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 705, 1302
BseJI GATNNNNATC 1 cut(s) 1319
BseLI CCNNNNNNNGG 3 cut(s) 674, 864, 1466
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 322, 894
BseNI ACTGG 1 cut(s) 1471
BseRI GAGGAG 4 cut(s) 205, 217, 879, 1031
BseSI GKGCMC 2 cut(s) 216, 838
BseXI GCAGC 3 cut(s) 114, 206, 481
BshFI GGCC 3 cut(s) 90, 836, 1124
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 3 cut(s) 33, 249, 1050
BsiHKCI CYCGRG 2 cut(s) 8, 1043
BsiSI CCGG 1 cut(s) 858
BslFI GGGAC 3 cut(s) 869, 1408, 1426
BslI CCNNNNNNNGG 3 cut(s) 674, 864, 1466
BsmAI GTCTC 3 cut(s) 322, 1095, 1444
BsmFI GGGAC 3 cut(s) 869, 1408, 1426
BsnI GGCC 3 cut(s) 90, 836, 1124
Bso31I GGTCTC 1 cut(s) 1444
BsoBI CYCGRG 2 cut(s) 8, 1043
Bsp120I GGGCCC 1 cut(s) 834
Bsp1286I GDGCHC 5 cut(s) 33, 216, 249, 838, 1050
Bsp143I GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
BspACI CCGC 1 cut(s) 1070
BspANI GGCC 3 cut(s) 90, 836, 1124
BspCNI CTCAG 2 cut(s) 321, 893
BspLI GGNNCC 4 cut(s) 836, 856, 1345, 1414
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 739, 1123
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 1444
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 857
BsrI ACTGG 1 cut(s) 1471
BssAI RCCGGY 1 cut(s) 857
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 862
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 862
Bst4CI ACNGT 2 cut(s) 157, 627
Bst6I CTCTTC 3 cut(s) 497, 973, 1044
BstACI GRCGYC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 940
BstC8I GCNNGC 1 cut(s) 1235
BstDEI CTNAG 4 cut(s) 308, 321, 830, 880
BstF5I GGATG 2 cut(s) 705, 1302
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 2 cut(s) 494, 1380
BstKTI GATC 8 cut(s) 54, 76, 412, 607, 734, 931, 958, 1118
BstMAI GTCTC 3 cut(s) 322, 1095, 1444
BstMBI GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
BstMWI GCNNNNNNNGC 5 cut(s) 103, 133, 244, 940, 1401
BstNSI RCATGY 3 cut(s) 373, 1054, 1254
BstSFI CTRYAG 2 cut(s) 128, 613
BstSLI GKGCMC 2 cut(s) 216, 838
BstV1I GCAGC 3 cut(s) 114, 206, 481
BstV2I GAAGAC 2 cut(s) 65, 519
BstX2I RGATCY 3 cut(s) 51, 73, 1115
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 3 cut(s) 51, 73, 1115
BsuRI GGCC 3 cut(s) 90, 836, 1124
BtsCI GGATG 2 cut(s) 705, 1302
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 4 cut(s) 214, 470, 699, 1483
Cac8I GCNNGC 1 cut(s) 1235
CfoI GCGC 2 cut(s) 494, 1380
Cfr10I RCCGGY 1 cut(s) 857
Cfr13I GGNCC 5 cut(s) 88, 834, 835, 1081, 1413
CseI GACGC 1 cut(s) 475
Csp6I GTAC 4 cut(s) 628, 848, 855, 983
CspCI CAANNNNNGTGG 4 cut(s) 532, 567, 1308, 1343
CviAII CATG 9 cut(s) 223, 370, 608, 651, 911, 923, 1051, 1251, 1355
CviQI GTAC 4 cut(s) 628, 848, 855, 983
DdeI CTNAG 4 cut(s) 308, 321, 830, 880
DpnI GATC 8 cut(s) 53, 75, 411, 606, 733, 930, 957, 1117
DpnII GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
DraI TTTAAA 1 cut(s) 672
DrdI GACNNNNNNGTC 1 cut(s) 1420
DseDI GACNNNNNNGTC 1 cut(s) 1420
EaeI YGGCCR 1 cut(s) 1122
Eam1104I CTCTTC 3 cut(s) 497, 973, 1044
EarI CTCTTC 3 cut(s) 497, 973, 1044
Ecl136II GAGCTC 2 cut(s) 31, 247
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 3 cut(s) 33, 249, 838
Eco31I GGTCTC 1 cut(s) 1444
Eco32I GATATC 1 cut(s) 824
Eco47I GGWCC 2 cut(s) 1081, 1413
Eco47III AGCGCT 1 cut(s) 493
Eco53kI GAGCTC 2 cut(s) 31, 247
Eco57I CTGAAG 1 cut(s) 92
Eco88I CYCGRG 2 cut(s) 8, 1043
EcoICRI GAGCTC 2 cut(s) 31, 247
EcoO109I RGGNCCY 2 cut(s) 834, 1413
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 3 cut(s) 33, 249, 838
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 9 cut(s) 226, 373, 611, 654, 914, 926, 1054, 1254, 1358
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 3 cut(s) 869, 1408, 1426
FatI CATG 9 cut(s) 222, 369, 607, 650, 910, 922, 1050, 1250, 1354
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 128, 220, 495
FokI GGATG 2 cut(s) 692, 1309
FriOI GRGCYC 3 cut(s) 33, 249, 838
Fsp4HI GCNGC 3 cut(s) 128, 220, 495
FspBI CTAG 4 cut(s) 77, 851, 1199, 1483
GlaI GCGC 2 cut(s) 493, 1379
GluI GCNGC 3 cut(s) 128, 220, 495
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 3 cut(s) 90, 836, 1124
HapII CCGG 1 cut(s) 858
HgaI GACGC 1 cut(s) 475
HhaI GCGC 2 cut(s) 494, 1380
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 9 cut(s) 226, 373, 611, 654, 914, 926, 1054, 1254, 1358
Hin6I GCGC 2 cut(s) 492, 1378
HinP1I GCGC 2 cut(s) 492, 1378
HincII GTYRAC 2 cut(s) 343, 623
HindII GTYRAC 2 cut(s) 343, 623
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 443, 787, 812
HpaII CCGG 1 cut(s) 858
HphI GGTGA 3 cut(s) 199, 422, 1459
Hpy166II GTNNAC 4 cut(s) 343, 543, 623, 1132
Hpy188I TCNGA 8 cut(s) 111, 201, 311, 409, 532, 1144, 1229, 1303
Hpy188III TCNNGA 8 cut(s) 10, 34, 55, 602, 801, 1043, 1384, 1399
Hpy8I GTNNAC 4 cut(s) 343, 543, 623, 1132
Hpy99I CGWCG 2 cut(s) 820, 1130
HpyAV CCTTC 4 cut(s) 7, 31, 79, 1305
HpyCH4III ACNGT 2 cut(s) 157, 627
HpyCH4IV ACGT 2 cut(s) 1057, 1245
HpyCH4V TGCA 8 cut(s) 130, 222, 233, 521, 738, 914, 920, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 133, 244, 940, 1401
HpyF3I CTNAG 4 cut(s) 308, 321, 830, 880
HpySE526I ACGT 2 cut(s) 1057, 1245
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 9 cut(s) 226, 373, 611, 654, 914, 926, 1054, 1254, 1358
HspAI GCGC 2 cut(s) 492, 1378
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
LmnI GCTCC 4 cut(s) 192, 244, 252, 1349
LpnPI CCDG 7 cut(s) 786, 787, 871, 966, 1369, 1452, 1467
Lsp1109I GCAGC 3 cut(s) 114, 206, 481
LweI GCATC 2 cut(s) 1389, 1404
MaeI CTAG 4 cut(s) 77, 851, 1199, 1483
MaeII ACGT 2 cut(s) 1057, 1245
MaeIII GTNAC 2 cut(s) 358, 1246
MalI GATC 8 cut(s) 53, 75, 411, 606, 733, 930, 957, 1117
MboI GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
MfeI CAATTG 1 cut(s) 1221
MflI RGATCY 3 cut(s) 51, 73, 1115
MhlI GDGCHC 5 cut(s) 33, 216, 249, 838, 1050
MluCI AATT 6 cut(s) 710, 840, 895, 1221, 1432, 1442
MlyI GAGTC 1 cut(s) 437
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 6 cut(s) 671, 1104, 1110, 1169, 1242, 1418
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 1221
MwoI GCNNNNNNNGC 5 cut(s) 103, 133, 244, 940, 1401
NdeII GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
NlaIII CATG 9 cut(s) 226, 373, 611, 654, 914, 926, 1054, 1254, 1358
NlaIV GGNNCC 4 cut(s) 836, 856, 1345, 1414
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 1246
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 3 cut(s) 373, 1054, 1254
PaeR7I CTCGAG 1 cut(s) 8
PciI ACATGT 1 cut(s) 1250
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 787, 812
PkrI GCNGC 3 cut(s) 129, 221, 496
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 1413
PscI ACATGT 1 cut(s) 1250
Psp124BI GAGCTC 2 cut(s) 33, 249
Psp5II RGGWCCY 1 cut(s) 1413
PspN4I GGNNCC 4 cut(s) 836, 856, 1345, 1414
PspOMI GGGCCC 1 cut(s) 834
PspPI GGNCC 5 cut(s) 88, 834, 835, 1081, 1413
PspPPI RGGWCCY 1 cut(s) 1413
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 3 cut(s) 51, 73, 1115
RsaI GTAC 4 cut(s) 629, 849, 856, 984
RsaNI GTAC 4 cut(s) 628, 848, 855, 983
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 2 cut(s) 33, 249
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 6 cut(s) 671, 1104, 1110, 1169, 1242, 1418
SatI GCNGC 3 cut(s) 128, 220, 495
Sau3AI GATC 8 cut(s) 51, 73, 409, 604, 731, 928, 955, 1115
Sau96I GGNCC 5 cut(s) 88, 834, 835, 1081, 1413
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 5 cut(s) 33, 216, 249, 838, 1050
SfaNI GCATC 2 cut(s) 1389, 1404
SfcI CTRYAG 2 cut(s) 128, 613
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 2 cut(s) 1081, 1413
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 4 cut(s) 8, 137, 961, 1399
SmoI CTYRAG 4 cut(s) 8, 137, 961, 1399
Sse9I AATT 6 cut(s) 710, 840, 895, 1221, 1432, 1442
SsiI CCGC 1 cut(s) 1070
SspMI CTAG 4 cut(s) 77, 851, 1199, 1483
SstI GAGCTC 2 cut(s) 33, 249
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 157, 627
TaiI ACGT 2 cut(s) 1060, 1248
TaqI TCGA 6 cut(s) 9, 255, 342, 601, 815, 1028
TasI AATT 6 cut(s) 710, 840, 895, 1221, 1432, 1442
TatI WGTACW 2 cut(s) 847, 982
TfiI GAWTC 2 cut(s) 787, 812
Tru1I TTAA 6 cut(s) 671, 1104, 1110, 1169, 1242, 1418
Tru9I TTAA 6 cut(s) 671, 1104, 1110, 1169, 1242, 1418
TscAI CASTG 4 cut(s) 221, 477, 706, 1483
TseFI GTSAC 1 cut(s) 1246
TseI GCWGC 3 cut(s) 127, 219, 494
Tsp45I GTSAC 1 cut(s) 1246
TspDTI ATGAA 5 cut(s) 17, 98, 239, 416, 822
TspRI CASTG 4 cut(s) 221, 477, 706, 1483
VpaK11BI GGWCC 2 cut(s) 1081, 1413
XapI RAATTY 1 cut(s) 840
XceI RCATGY 3 cut(s) 373, 1054, 1254
XhoI CTCGAG 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 4 cut(s) 77, 851, 1199, 1483
ZrmI AGTACT 1 cut(s) 984
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.