Rw7G041040

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000125
Physical Location & Seq
Forward (+)
63989185 .. 63990342
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041040.1

Sequence Viewer

Length: 1158 bp
ATGGTGAACAACATCTCTTTCTCTAGACTTCACACACATTTACTTATTGCCGCCAATTCGGCTGCTGCTGCTGATTCAATACCTCTACTTATGTGTTTCTCTCAATCATGGCTTAAAGAGAGCGATGAGCTTTCAGTGACACTGCAATCACTGAAATACAACACCAACACCTTAACAAAAGGCAGATATGCAATTACTTTTTCGTCACGTTACTATGCTTTTTGGTCACATTACTATGTGTGTTTTGTTTTCTGCAACTTGTTTTGGTTGAGATCCAAAAATGGAGATTGCATATTAATCAATCCTCTTAGGGAAAGGGAAGTTGTAAGGCTCCCAGAAACTACTTTCGTACAACCTACAAAGAGTGGAGTGTTTCCCACTTGTAGGTTTGGAATGGGATTTGATAATAAAACGAATACCTTCAAACTTTTAGGTGTTACTCATGAATCTGACTTTCATTTTCAATTTGGGCTTGATGAGGGTGAAGCAGCTTTGGATGAGAATCAACAAAGAAAATTTAATGGTGATTATAGACATAAGTACTGTATGACAGCACATATTCTTGTATTGGGCACAGACTCATGGCGAGAAATACCCTCACTTCCTCCTTGTGAGTTGGACATCATGAACGACCCGGTATGTGCAAATGGAGATGTGCATTGGTTGACAAGAGAAAGATGTAAAAGAATAATTTCTTTTAACTTCAAGAAAGAAGAGTTCTATTGCATCCCTACTCCTCCCACGTTAAAAAGCTCGAACAACTCAAAAATGCGTTTGCTTACTCTGAGAGGATCTTTGGCCATTGTGGAGACTTCTTCTTCATCATCACCAGGAGGTATCATTACGAACATTGAGATATGGGTTTTAAAAGATTTTGACGAAAAACAATGGGTAAGATACTACAAGAACAAAATATCAGACACTATTTGTTGTGGATTATTATCTCCGGGGGAATGGGAACATGGAATATTTTTCACAAGTCACAATTTTCCGCATACTTGTGTGTTCTTTTTAGATCTAAGAGATGGTTCCGTCAATCGTGTATTATACCCATTATGTGAGAATGAGAACTTTCTGGGTATGCATAGTTATCCTGAGACCTTGATTTCCTTAAAAGATTATGGCAATTTGGAGGATGCTCATGGAGTGATTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

385

Amino Acids

44.17

Weight (kDa)

6.36

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 30 - 301 1.5e-19 F-box associated beta propeller domain
FBA_1 PF07734 111 - 308 1.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 992
AclWI GGATC 2 cut(s) 267, 799
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 2 cut(s) 351, 542
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 4 cut(s) 78, 424, 464, 706
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 3 cut(s) 130, 491, 753
AluI AGCT 3 cut(s) 130, 491, 753
Alw26I GTCTC 2 cut(s) 803, 1091
AlwI GGATC 2 cut(s) 267, 799
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 4 cut(s) 62, 65, 68, 488
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 1 cut(s) 296
Asp700I GAANNNNTTC 2 cut(s) 419, 691
AsuC2I CCSGG 2 cut(s) 635, 948
AsuHPI GGTGA 4 cut(s) 16, 494, 536, 819
BaeGI GKGCMC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 800
BbvI GCAGC 4 cut(s) 49, 52, 55, 500
BccI CCATC 1 cut(s) 1019
BciT130I CCWGG 1 cut(s) 831
BcnI CCSGG 2 cut(s) 635, 948
BcoDI GTCTC 2 cut(s) 803, 1091
BfaI CTAG 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 5 cut(s) 51, 63, 66, 69, 489
BlsI GCNGC 5 cut(s) 52, 64, 67, 70, 490
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 3 cut(s) 635, 831, 948
BmiI GGNNCC 2 cut(s) 332, 1030
BmrFI CCNGG 3 cut(s) 635, 831, 948
BmsI GCATC 2 cut(s) 735, 1126
BpuMI CCSGG 2 cut(s) 635, 948
BsaBI GATNNNNATC 2 cut(s) 501, 940
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 1 cut(s) 947
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 501, 940
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 1 cut(s) 947
BseGI GGATG 3 cut(s) 502, 726, 1141
BseJI GATNNNNATC 2 cut(s) 501, 940
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 776, 1086
BseRI GAGGAG 1 cut(s) 726
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 4 cut(s) 49, 52, 55, 500
BshFI GGCC 1 cut(s) 800
BsiSI CCGG 2 cut(s) 635, 947
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 2 cut(s) 803, 1091
BsnI GGCC 1 cut(s) 800
Bso31I GGTCTC 1 cut(s) 1091
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 3 cut(s) 272, 791, 1015
BspACI CCGC 2 cut(s) 51, 992
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 2 cut(s) 777, 1087
BspHI TCATGA 2 cut(s) 442, 624
BspLI GGNNCC 2 cut(s) 332, 1030
BspPI GGATC 2 cut(s) 267, 799
BspTNI GGTCTC 1 cut(s) 1091
BssECI CCNNGG 1 cut(s) 947
BssMI GATC 3 cut(s) 272, 791, 1015
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 708
BstDEI CTNAG 4 cut(s) 308, 785, 1019, 1095
BstF5I GGATG 3 cut(s) 502, 726, 1141
BstKTI GATC 3 cut(s) 275, 794, 1018
BstMAI GTCTC 2 cut(s) 803, 1091
BstMBI GATC 3 cut(s) 272, 791, 1015
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNI CCWGG 1 cut(s) 831
BstSCI CCNGG 3 cut(s) 633, 829, 946
BstSLI GKGCMC 1 cut(s) 575
BstV1I GCAGC 4 cut(s) 49, 52, 55, 500
BstX2I RGATCY 3 cut(s) 272, 791, 1015
BstYI RGATCY 3 cut(s) 272, 791, 1015
BsuRI GGCC 1 cut(s) 800
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 502, 726, 1141
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 3 cut(s) 140, 141, 149
CciI TCATGA 2 cut(s) 442, 624
Csp6I GTAC 2 cut(s) 350, 541
CviAII CATG 6 cut(s) 108, 443, 582, 625, 962, 1142
CviJI RGCY 8 cut(s) 62, 112, 130, 331, 472, 491, 753, 800
CviKI_1 RGCY 8 cut(s) 62, 112, 130, 331, 472, 491, 753, 800
CviQI GTAC 2 cut(s) 350, 541
DdeI CTNAG 4 cut(s) 308, 785, 1019, 1095
DpnI GATC 3 cut(s) 274, 793, 1017
DpnII GATC 3 cut(s) 272, 791, 1015
DraI TTTAAA 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 798
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 1091
EcoRII CCWGG 1 cut(s) 829
EcoT22I ATGCAT 1 cut(s) 1086
FaeI CATG 6 cut(s) 111, 446, 585, 628, 965, 1145
FatI CATG 6 cut(s) 107, 442, 581, 624, 961, 1141
Fnu4HI GCNGC 5 cut(s) 51, 63, 66, 69, 489
FokI GGATG 3 cut(s) 509, 713, 1148
Fsp4HI GCNGC 5 cut(s) 51, 63, 66, 69, 489
FspBI CTAG 1 cut(s) 24
GluI GCNGC 5 cut(s) 51, 63, 66, 69, 489
HaeIII GGCC 1 cut(s) 800
HapII CCGG 2 cut(s) 635, 947
Hin1II CATG 6 cut(s) 111, 446, 585, 628, 965, 1145
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 4 cut(s) 74, 446, 502, 578
HpaII CCGG 2 cut(s) 635, 947
HphI GGTGA 4 cut(s) 16, 494, 536, 819
Hpy166II GTNNAC 2 cut(s) 7, 666
Hpy188I TCNGA 3 cut(s) 451, 786, 919
Hpy188III TCNNGA 5 cut(s) 24, 443, 625, 706, 1094
Hpy8I GTNNAC 2 cut(s) 7, 666
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 2 cut(s) 208, 743
HpyCH4V TGCA 8 cut(s) 145, 191, 255, 291, 644, 658, 726, 1084
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 4 cut(s) 308, 785, 1019, 1095
HpySE526I ACGT 2 cut(s) 208, 743
Hsp92II CATG 6 cut(s) 111, 446, 585, 628, 965, 1145
Kzo9I GATC 3 cut(s) 272, 791, 1015
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 7 cut(s) 348, 648, 816, 843, 960, 1061, 1107
Lsp1109I GCAGC 4 cut(s) 49, 52, 55, 500
LweI GCATC 2 cut(s) 735, 1126
MaeI CTAG 1 cut(s) 24
MaeII ACGT 2 cut(s) 208, 743
MaeIII GTNAC 6 cut(s) 136, 204, 209, 225, 436, 980
MalI GATC 3 cut(s) 274, 793, 1017
MboI GATC 3 cut(s) 272, 791, 1015
MboII GAAGA 3 cut(s) 725, 807, 810
MflI RGATCY 3 cut(s) 272, 791, 1015
MhlI GDGCHC 1 cut(s) 575
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 7 cut(s) 55, 192, 464, 515, 690, 985, 1126
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 9 cut(s) 93, 315, 472, 607, 615, 747, 782, 827, 1126
Mox20I TGGCCA 1 cut(s) 800
Mph1103I ATGCAT 1 cut(s) 1086
MroXI GAANNNNTTC 2 cut(s) 419, 691
MscI TGGCCA 1 cut(s) 800
MseI TTAA 8 cut(s) 114, 173, 296, 519, 699, 746, 866, 1112
MslI CAYNNNNRTG 2 cut(s) 234, 999
Msp20I TGGCCA 1 cut(s) 800
MspI CCGG 2 cut(s) 635, 947
MspR9I CCNGG 3 cut(s) 635, 831, 948
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NciI CCSGG 2 cut(s) 635, 948
NdeII GATC 3 cut(s) 272, 791, 1015
NlaIII CATG 6 cut(s) 111, 446, 585, 628, 965, 1145
NlaIV GGNNCC 2 cut(s) 332, 1030
NmuCI GTSAC 4 cut(s) 136, 204, 225, 980
NsiI ATGCAT 1 cut(s) 1086
PagI TCATGA 2 cut(s) 442, 624
PdmI GAANNNNTTC 2 cut(s) 419, 691
PfeI GAWTC 3 cut(s) 74, 446, 502
PkrI GCNGC 5 cut(s) 52, 64, 67, 70, 490
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 332, 1030
PsuI RGATCY 3 cut(s) 272, 791, 1015
RsaI GTAC 2 cut(s) 351, 542
RsaNI GTAC 2 cut(s) 350, 541
RseI CAYNNNNRTG 2 cut(s) 234, 999
SaqAI TTAA 8 cut(s) 114, 173, 296, 519, 699, 746, 866, 1112
SatI GCNGC 5 cut(s) 51, 63, 66, 69, 489
Sau3AI GATC 3 cut(s) 272, 791, 1015
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 3 cut(s) 635, 831, 948
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 2 cut(s) 735, 1126
SmiMI CAYNNNNRTG 2 cut(s) 234, 999
Sse9I AATT 7 cut(s) 55, 192, 464, 515, 690, 985, 1126
SsiI CCGC 2 cut(s) 51, 992
SspI AATATT 1 cut(s) 969
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 3 cut(s) 633, 829, 946
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 2 cut(s) 211, 746
TaqI TCGA 1 cut(s) 755
TasI AATT 7 cut(s) 55, 192, 464, 515, 690, 985, 1126
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 74, 446, 502
Tru1I TTAA 8 cut(s) 114, 173, 296, 519, 699, 746, 866, 1112
Tru9I TTAA 8 cut(s) 114, 173, 296, 519, 699, 746, 866, 1112
TscAI CASTG 3 cut(s) 141, 147, 156
TseFI GTSAC 4 cut(s) 136, 204, 225, 980
TseI GCWGC 4 cut(s) 62, 65, 68, 488
Tsp45I GTSAC 4 cut(s) 136, 204, 225, 980
TspDTI ATGAA 4 cut(s) 446, 459, 641, 810
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 3 cut(s) 141, 147, 156
VspI ATTAAT 1 cut(s) 296
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 23
XmnI GAANNNNTTC 2 cut(s) 419, 691
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.