Rh4DG287300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000125
Physical Location & Seq
Forward (+)
50819355 .. 50820524
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG287300.1

Sequence Viewer

Length: 1170 bp
ATGCCCGATCATATCATTGTGGATATCCTTATGAGACTGCCCCTGAAATCATTCTGTCGTCTCCGATGTGTCTCCAAGACCTGTATGAACATGATTGATTCCCCCCTTTTCACACAATTGCAAAAGGCACGTTTACTTAAGCTTTCTACCGACTACTACGCTGCTACTGCTTTTACTTCTGCTCCGGATGTACCTCAACTTGGAATGCTTCAGTATTCATCGAGGAGTATGAAGTGGCAGCCATTGGCATACAATGAGAAGCGTGGCTTGACACGAATAAAACATGCTCTCCCGATCTCAGAGTTGTTCATCTCGAGGTACTATGAAGTACATTTTGTTTTTTGCAACTTGTTTTTCCTTAAAATAAGTAAATGCGGATTTTGGCTCCCCAATTCGTGTTGCTTATTCAATCCCCTAAGGGGAGAAGTTCTAAAGATCCCAGCCTGTCCTACTAATCACGAGTACTTGCCAGTGGATTGGTTTGGTATGGGTTTTGATTGTACAACCAACACTTACAAACTCGTTTGCGTTTCGGGGAGTCAGGAAAATCACCATGTAACGGCTCATGTTTATGTTCTAGGCACTCACTCATCCTCATGGCAAGAGATACAATCAGTTCCTCCTCGTCGTTTAAGTAAAAAAAATGTATGTGCTTGTGGAGACATGCATTGGTTGGTCGAACAAGGAAGCCATGTTAATATTGCAGGAGGAGGAAGCCATATAATTTCTTTCGACTTCAAAAAAGGAGAGTTTTGCTGGACTCCTCATCCCACCTTAAAAGGGTTGAAATTACATGGTTATTTTGGATTTGGAAACTCTCGTTTGCTTGAAGACTTTCACTTGCTTAATATGAAAGGATCTATGGCTCTGGTGGATGCTAATTCATTAGAAGAATATATTCACATTTGGGTACTGAAAAGTTACCTTAAGAAGGAGTGGGCTTTAGATTACAAAATCAATACCCAAACACTTGTAGGATATCCTGAAGGTGGGTTACGAAATTATACTTGTTATGAATGGGAGCATGGAATAGCAGTCCATAAGGGTGACATGTGCTACTTTTTGGATCTAAGATGTGACTCCATAAAATGTGTCAAAGGAGGATTTGAGAAGATCTACAGTTTTACTGGAAGCTTGATTTCCTTGAAAAAACTGTCACAATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

389

Amino Acids

44.53

Weight (kDa)

8.78

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 1 - 38 3.2e-08 F-box domain
FBA_1 PF07734 108 - 261 5.3e-13 F-box associated beta propeller domain
FBA_3 PF08268 134 - 314 7.8e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 375
AclWI GGATC 3 cut(s) 430, 865, 1074
AcuI CTGAAG 2 cut(s) 194, 1005
AfaI GTAC 6 cut(s) 192, 320, 330, 464, 502, 912
AfiI CCNNNNNNNGG 6 cut(s) 200, 419, 559, 780, 931, 989
AflII CTTAAG 2 cut(s) 137, 926
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 5 cut(s) 409, 739, 787, 830, 1147
AluBI AGCT 2 cut(s) 142, 1134
AluI AGCT 2 cut(s) 142, 1134
Alw26I GTCTC 4 cut(s) 28, 65, 76, 654
AlwI GGATC 3 cut(s) 430, 865, 1074
Ama87I CYCGRG 1 cut(s) 313
Aor13HI TCCGGA 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 161, 238
Asp700I GAANNNNTTC 3 cut(s) 50, 834, 897
AsuHPI GGTGA 2 cut(s) 542, 1058
AvaI CYCGRG 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 978, 1010
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 148, 250
BceAI ACGGC 1 cut(s) 576
BcoDI GTCTC 4 cut(s) 28, 65, 76, 654
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 1117
BfrI CTTAAG 2 cut(s) 137, 926
BglII AGATCT 1 cut(s) 1113
BisI GCNGC 2 cut(s) 162, 239
BlsI GCNGC 2 cut(s) 163, 240
BmcAI AGTACT 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 837
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 273, 303
Bsc4I CCNNNNNNNGG 6 cut(s) 200, 419, 559, 780, 931, 989
Bse1I ACTGG 2 cut(s) 470, 1132
Bse21I CCTNAGG 1 cut(s) 416
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 4 cut(s) 193, 590, 766, 880
BseLI CCNNNNNNNGG 6 cut(s) 200, 419, 559, 780, 931, 989
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 470, 1132
BseRI GAGGAG 4 cut(s) 238, 612, 723, 753
BseXI GCAGC 2 cut(s) 148, 250
BseYI CCCAGC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 6 cut(s) 200, 419, 559, 780, 931, 989
BsmAI GTCTC 4 cut(s) 28, 65, 76, 654
BsmBI CGTCTC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 313
Bsp13I TCCGGA 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
BspACI CCGC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 3 cut(s) 430, 865, 1074
BspTI CTTAAG 2 cut(s) 137, 926
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 2 cut(s) 470, 1132
BssMI GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 1121, 1155
BstAFI CTTAAG 2 cut(s) 137, 926
BstAUI TGTACA 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 298, 416, 1070
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 4 cut(s) 193, 590, 766, 880
BstKTI GATC 6 cut(s) 10, 297, 438, 860, 1069, 1116
BstMAI GTCTC 4 cut(s) 28, 65, 76, 654
BstMBI GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 3 cut(s) 287, 667, 1054
BstSFI CTRYAG 1 cut(s) 1117
BstV1I GCAGC 2 cut(s) 148, 250
BstV2I GAAGAC 1 cut(s) 837
BstX2I RGATCY 4 cut(s) 435, 857, 1066, 1113
BstXI CCANNNNNNTGG 1 cut(s) 477
BstYI RGATCY 4 cut(s) 435, 857, 1066, 1113
Bsu36I CCTNAGG 1 cut(s) 416
BtsCI GGATG 4 cut(s) 193, 590, 766, 880
BtsIMutI CAGTG 1 cut(s) 477
Csp6I GTAC 6 cut(s) 191, 319, 329, 463, 501, 911
CviQI GTAC 6 cut(s) 191, 319, 329, 463, 501, 911
DdeI CTNAG 3 cut(s) 298, 416, 1070
DpnI GATC 6 cut(s) 9, 296, 437, 859, 1068, 1115
DpnII GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
Eco32I GATATC 2 cut(s) 25, 980
Eco57I CTGAAG 2 cut(s) 194, 1005
Eco81I CCTNAGG 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoRV GATATC 2 cut(s) 25, 980
EcoT22I ATGCAT 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 65
FalI AAGNNNNNCTT 2 cut(s) 251, 283
Fnu4HI GCNGC 2 cut(s) 162, 239
FokI GGATG 4 cut(s) 200, 577, 753, 887
Fsp4HI GCNGC 2 cut(s) 162, 239
FspBI CTAG 1 cut(s) 578
GluI GCNGC 2 cut(s) 162, 239
GsaI CCCAGC 1 cut(s) 443
HapII CCGG 1 cut(s) 185
HindIII AAGCTT 2 cut(s) 140, 1132
HinfI GANTC 4 cut(s) 98, 538, 760, 1079
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 542, 1058
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 65, 301
Hpy188III TCNNGA 6 cut(s) 185, 292, 313, 458, 542, 983
Hpy8I GTNNAC 1 cut(s) 134
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 2 cut(s) 925, 980
HpyCH4III ACNGT 2 cut(s) 1121, 1155
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 121, 345, 667, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 298, 416, 1070
HpySE526I ACGT 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
LmnI GCTCC 3 cut(s) 187, 390, 1021
Lsp1109I GCAGC 2 cut(s) 148, 250
LweI GCATC 1 cut(s) 865
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 6 cut(s) 556, 920, 993, 1046, 1076, 1155
MalI GATC 6 cut(s) 9, 296, 437, 859, 1068, 1115
MboI GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
MboII GAAGA 3 cut(s) 842, 902, 1123
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 4 cut(s) 435, 857, 1066, 1113
MluCI AATT 7 cut(s) 116, 391, 723, 788, 880, 1000, 1160
MlyI GAGTC 3 cut(s) 547, 754, 1073
Mph1103I ATGCAT 1 cut(s) 669
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 3 cut(s) 50, 834, 897
MseI TTAA 7 cut(s) 138, 360, 632, 696, 776, 846, 927
MslI CAYNNNNRTG 3 cut(s) 570, 595, 1044
MspCI CTTAAG 2 cut(s) 137, 926
MspI CCGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 3 cut(s) 1046, 1076, 1155
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 3 cut(s) 287, 667, 1054
PaeR7I CTCGAG 1 cut(s) 313
PciI ACATGT 1 cut(s) 1050
PctI GAATGC 1 cut(s) 210
PdmI GAANNNNTTC 3 cut(s) 50, 834, 897
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 163, 240
PleI GAGTC 3 cut(s) 546, 754, 1073
PpsI GAGTC 3 cut(s) 546, 754, 1073
PscI ACATGT 1 cut(s) 1050
PspFI CCCAGC 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 386
PsuI RGATCY 4 cut(s) 435, 857, 1066, 1113
RsaI GTAC 6 cut(s) 192, 320, 330, 464, 502, 912
RsaNI GTAC 6 cut(s) 191, 319, 329, 463, 501, 911
RseI CAYNNNNRTG 3 cut(s) 570, 595, 1044
SaqAI TTAA 7 cut(s) 138, 360, 632, 696, 776, 846, 927
SatI GCNGC 2 cut(s) 162, 239
Sau3AI GATC 6 cut(s) 7, 294, 435, 857, 1066, 1113
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 3 cut(s) 547, 754, 1073
SetI ASST 9 cut(s) 83, 133, 144, 196, 320, 776, 927, 991, 1136
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 1 cut(s) 1117
Sfr274I CTCGAG 1 cut(s) 313
SlaI CTCGAG 1 cut(s) 313
SmiMI CAYNNNNRTG 3 cut(s) 570, 595, 1044
SmlI CTYRAG 3 cut(s) 137, 313, 926
SmoI CTYRAG 3 cut(s) 137, 313, 926
Sse9I AATT 7 cut(s) 116, 391, 723, 788, 880, 1000, 1160
SsiI CCGC 1 cut(s) 375
SspI AATATT 1 cut(s) 700
SspMI CTAG 1 cut(s) 578
TaaI ACNGT 2 cut(s) 1121, 1155
TaiI ACGT 1 cut(s) 133
TaqI TCGA 4 cut(s) 221, 314, 678, 732
TasI AATT 7 cut(s) 116, 391, 723, 788, 880, 1000, 1160
TatI WGTACW 3 cut(s) 328, 462, 500
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 7 cut(s) 138, 360, 632, 696, 776, 846, 927
Tru9I TTAA 7 cut(s) 138, 360, 632, 696, 776, 846, 927
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 3 cut(s) 1046, 1076, 1155
TseI GCWGC 2 cut(s) 161, 238
Tsp45I GTSAC 3 cut(s) 1046, 1076, 1155
TspDTI ATGAA 8 cut(s) 101, 207, 245, 298, 339, 866, 873, 1029
TspRI CASTG 1 cut(s) 477
Vha464I CTTAAG 2 cut(s) 137, 926
XagI CCTNNNNNAGG 1 cut(s) 929
XceI RCATGY 3 cut(s) 287, 667, 1054
XhoI CTCGAG 1 cut(s) 313
XmnI GAANNNNTTC 3 cut(s) 50, 834, 897
XspI CTAG 1 cut(s) 578
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.