Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 206 | 9.7e-28 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 294 - 372 | 1.2e-26 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 404 - 470 | 3.1e-10 | GAG-pre-integrase domain |
| rve | PF00665 | 484 - 585 | 4.7e-07 | Integrase core domain |
| SH3_retrovirus | PF25597 | 657 - 717 | 1.7e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 831 - 941 | 4.8e-38 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 944 - 1040 | 1.8e-23 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2742 |
| Acc16I | TGCGCA | 1 cut(s) | 494 |
| Acc36I | ACCTGC | 1 cut(s) | 1375 |
| Acc65I | GGTACC | 1 cut(s) | 3118 |
| AccB1I | GGYRCC | 1 cut(s) | 3118 |
| AccI | GTMKAC | 1 cut(s) | 2586 |
| AccII | CGCG | 1 cut(s) | 677 |
| AccIII | TCCGGA | 1 cut(s) | 3425 |
| AciI | CCGC | 4 cut(s) | 1358, 1444, 1485, 3738 |
| AclWI | GGATC | 4 cut(s) | 1412, 2069, 2405, 2558 |
| AcoI | YGGCCR | 2 cut(s) | 2610, 3658 |
| AcsI | RAATTY | 6 cut(s) | 44, 509, 809, 1694, 1798, 3561 |
| AcuI | CTGAAG | 5 cut(s) | 30, 168, 329, 2301, 3525 |
| AcyI | GRCGYC | 1 cut(s) | 2739 |
| AfaI | GTAC | 8 cut(s) | 1396, 1523, 1663, 2031, 3120, 3581, 3598, 3831 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 565, 785, 1166, 1200 |
| AflIII | ACRYGT | 1 cut(s) | 240 |
| AgeI | ACCGGT | 1 cut(s) | 125 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2743 |
| AhlI | ACTAGT | 4 cut(s) | 617, 1465, 2605, 2912 |
| AjnI | CCWGG | 1 cut(s) | 878 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 21, 53 |
| AleI | CACNNNNGTG | 1 cut(s) | 1279 |
| Alw21I | GWGCWC | 2 cut(s) | 340, 3422 |
| Alw26I | GTCTC | 6 cut(s) | 48, 146, 354, 912, 1175, 2181 |
| AlwI | GGATC | 4 cut(s) | 1412, 2069, 2405, 2558 |
| Ama87I | CYCGRG | 1 cut(s) | 892 |
| Aor13HI | TCCGGA | 1 cut(s) | 3425 |
| AoxI | GGCC | 8 cut(s) | 633, 757, 1254, 1486, 1847, 2359, 2610, 3658 |
| ApeKI | GCWGC | 9 cut(s) | 5, 143, 283, 574, 2705, 3192, 3290, 3452, 3811 |
| ApoI | RAATTY | 6 cut(s) | 44, 509, 809, 1694, 1798, 3561 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3215, 3247 |
| AseI | ATTAAT | 2 cut(s) | 836, 2507 |
| AsiGI | ACCGGT | 1 cut(s) | 125 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 87, 1248 |
| Asp718I | GGTACC | 1 cut(s) | 3118 |
| AspLEI | GCGC | 2 cut(s) | 495, 677 |
| AspS9I | GGNCC | 4 cut(s) | 1487, 1809, 2392, 3301 |
| AsuC2I | CCSGG | 1 cut(s) | 3123 |
| AsuII | TTCGAA | 1 cut(s) | 610 |
| AvaI | CYCGRG | 1 cut(s) | 892 |
| AvaII | GGWCC | 3 cut(s) | 1809, 2392, 3301 |
| AxyI | CCTNAGG | 3 cut(s) | 1851, 3071, 3305 |
| BaeGI | GKGCMC | 2 cut(s) | 1974, 3538 |
| BalI | TGGCCA | 1 cut(s) | 2612 |
| BanI | GGYRCC | 1 cut(s) | 3118 |
| BanII | GRGCYC | 2 cut(s) | 115, 340 |
| BbsI | GAAGAC | 4 cut(s) | 260, 712, 2295, 2433 |
| Bbv12I | GWGCWC | 2 cut(s) | 340, 3422 |
| BbvCI | CCTCAGC | 1 cut(s) | 2247 |
| BbvI | GCAGC | 9 cut(s) | 17, 130, 295, 561, 2692, 3204, 3302, 3439, 3823 |
| BceAI | ACGGC | 1 cut(s) | 3673 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BciT130I | CCWGG | 1 cut(s) | 880 |
| BciVI | GTATCC | 1 cut(s) | 2612 |
| BcnI | CCSGG | 1 cut(s) | 3123 |
| BcoDI | GTCTC | 6 cut(s) | 48, 146, 354, 912, 1175, 2181 |
| BcuI | ACTAGT | 4 cut(s) | 617, 1465, 2605, 2912 |
| BfmI | CTRYAG | 6 cut(s) | 263, 1497, 1950, 2062, 2152, 2664 |
| BfuAI | ACCTGC | 1 cut(s) | 1375 |
| BfuI | GTATCC | 1 cut(s) | 2612 |
| BglII | AGATCT | 1 cut(s) | 3700 |
| BlpI | GCTNAGC | 1 cut(s) | 3025 |
| Bme1390I | CCNGG | 2 cut(s) | 880, 3123 |
| Bme18I | GGWCC | 3 cut(s) | 1809, 2392, 3301 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2743 |
| BmeT110I | CYCGRG | 1 cut(s) | 892 |
| BmgT120I | GGNCC | 4 cut(s) | 1487, 1809, 2392, 3301 |
| BmiI | GGNNCC | 3 cut(s) | 1833, 3120, 3302 |
| BmrFI | CCNGG | 2 cut(s) | 880, 3123 |
| BmrI | ACTGGG | 1 cut(s) | 2149 |
| BmuI | ACTGGG | 1 cut(s) | 2149 |
| BpiI | GAAGAC | 4 cut(s) | 260, 712, 2295, 2433 |
| BpmI | CTGGAG | 2 cut(s) | 203, 936 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2247 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3025 |
| Bpu14I | TTCGAA | 1 cut(s) | 610 |
| BpuEI | CTTGAG | 5 cut(s) | 397, 1058, 1108, 2027, 2610 |
| BpuMI | CCSGG | 1 cut(s) | 3123 |
| Bsa29I | ATCGAT | 1 cut(s) | 1885 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3203 |
| BsaHI | GRCGYC | 1 cut(s) | 2739 |
| BsaI | GGTCTC | 2 cut(s) | 146, 1175 |
| BsaJI | CCNNGG | 3 cut(s) | 997, 2055, 2613 |
| BsaWI | WCCGGW | 2 cut(s) | 125, 3425 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3067, 3097, 3144, 3174 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 565, 785, 1166, 1200 |
| Bse118I | RCCGGY | 3 cut(s) | 125, 2518, 3523 |
| Bse1I | ACTGG | 4 cut(s) | 229, 919, 2144, 3647 |
| Bse21I | CCTNAGG | 3 cut(s) | 1851, 3071, 3305 |
| Bse3DI | GCAATG | 4 cut(s) | 350, 2466, 3066, 3733 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3203 |
| BseAI | TCCGGA | 1 cut(s) | 3425 |
| BseBI | CCWGG | 1 cut(s) | 880 |
| BseCI | ATCGAT | 1 cut(s) | 1885 |
| BseDI | CCNNGG | 3 cut(s) | 997, 2055, 2613 |
| BseJI | GATNNNNATC | 1 cut(s) | 3203 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 565, 785, 1166, 1200 |
| BseMI | GCAATG | 4 cut(s) | 350, 2466, 3066, 3733 |
| BseNI | ACTGG | 4 cut(s) | 229, 919, 2144, 3647 |
| BseRI | GAGGAG | 6 cut(s) | 684, 1937, 3088, 3366, 3369, 3571 |
| BseSI | GKGCMC | 2 cut(s) | 1974, 3538 |
| BseX3I | CGGCCG | 1 cut(s) | 3658 |
| BseXI | GCAGC | 9 cut(s) | 17, 130, 295, 561, 2692, 3204, 3302, 3439, 3823 |
| BsgI | GTGCAG | 2 cut(s) | 2691, 3157 |
| Bsh1236I | CGCG | 1 cut(s) | 677 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3661 |
| BshFI | GGCC | 8 cut(s) | 635, 759, 1256, 1488, 1849, 2361, 2612, 3660 |
| BshNI | GGYRCC | 1 cut(s) | 3118 |
| BshTI | ACCGGT | 1 cut(s) | 125 |
| BshVI | ATCGAT | 1 cut(s) | 1885 |
| BsiEI | CGRYCG | 1 cut(s) | 3661 |
| BsiHKAI | GWGCWC | 2 cut(s) | 340, 3422 |
| BsiHKCI | CYCGRG | 1 cut(s) | 892 |
| BsiSI | CCGG | 8 cut(s) | 126, 1147, 2519, 3122, 3396, 3426, 3524, 3661 |
| BslFI | GGGAC | 2 cut(s) | 305, 3334 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 565, 785, 1166, 1200 |
| BsmAI | GTCTC | 6 cut(s) | 48, 146, 354, 912, 1175, 2181 |
| BsmFI | GGGAC | 2 cut(s) | 305, 3334 |
| BsmI | GAATGC | 2 cut(s) | 36, 740 |
| BsnI | GGCC | 8 cut(s) | 635, 759, 1256, 1488, 1849, 2361, 2612, 3660 |
| Bso31I | GGTCTC | 2 cut(s) | 146, 1175 |
| BsoBI | CYCGRG | 1 cut(s) | 892 |
| Bsp119I | TTCGAA | 1 cut(s) | 610 |
| Bsp1286I | GDGCHC | 5 cut(s) | 115, 340, 1974, 3422, 3538 |
| Bsp13I | TCCGGA | 1 cut(s) | 3425 |
| Bsp1407I | TGTACA | 1 cut(s) | 1394 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3025 |
| BspACI | CCGC | 4 cut(s) | 1358, 1444, 1485, 3738 |
| BspANI | GGCC | 8 cut(s) | 635, 759, 1256, 1488, 1849, 2361, 2612, 3660 |
| BspDI | ATCGAT | 1 cut(s) | 1885 |
| BspEI | TCCGGA | 1 cut(s) | 3425 |
| BspFNI | CGCG | 1 cut(s) | 677 |
| BspHI | TCATGA | 3 cut(s) | 420, 1132, 3745 |
| BspLI | GGNNCC | 3 cut(s) | 1833, 3120, 3302 |
| BspMAI | CTGCAG | 1 cut(s) | 267 |
| BspMI | ACCTGC | 1 cut(s) | 1375 |
| BspPI | GGATC | 4 cut(s) | 1412, 2069, 2405, 2558 |
| BspT104I | TTCGAA | 1 cut(s) | 610 |
| BspT107I | GGYRCC | 1 cut(s) | 3118 |
| BspTNI | GGTCTC | 2 cut(s) | 146, 1175 |
| BsrDI | GCAATG | 4 cut(s) | 350, 2466, 3066, 3733 |
| BsrFI | RCCGGY | 3 cut(s) | 125, 2518, 3523 |
| BsrGI | TGTACA | 1 cut(s) | 1394 |
| BsrI | ACTGG | 4 cut(s) | 229, 919, 2144, 3647 |
| BssAI | RCCGGY | 3 cut(s) | 125, 2518, 3523 |
| BssECI | CCNNGG | 3 cut(s) | 997, 2055, 2613 |
| BssNI | GRCGYC | 1 cut(s) | 2739 |
| BssT1I | CCWWGG | 3 cut(s) | 997, 2055, 2613 |
| Bst2UI | CCWGG | 1 cut(s) | 880 |
| Bst4CI | ACNGT | 6 cut(s) | 928, 1792, 2070, 2683, 3325, 3386 |
| Bst6I | CTCTTC | 8 cut(s) | 144, 230, 531, 655, 688, 860, 2154, 2812 |
| BstACI | GRCGYC | 1 cut(s) | 2739 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2465 |
| BstAUI | TGTACA | 1 cut(s) | 1394 |
| BstBI | TTCGAA | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 4 cut(s) | 141, 1446, 1658, 2457 |
| BstFNI | CGCG | 1 cut(s) | 677 |
| BstHHI | GCGC | 2 cut(s) | 495, 677 |
| BstMAI | GTCTC | 6 cut(s) | 48, 146, 354, 912, 1175, 2181 |
| BstMCI | CGRYCG | 1 cut(s) | 3661 |
| BstNI | CCWGG | 1 cut(s) | 880 |
| BstNSI | RCATGY | 3 cut(s) | 244, 442, 3284 |
| BstSCI | CCNGG | 2 cut(s) | 878, 3121 |
| BstSFI | CTRYAG | 6 cut(s) | 263, 1497, 1950, 2062, 2152, 2664 |
| BstSLI | GKGCMC | 2 cut(s) | 1974, 3538 |
| BstUI | CGCG | 1 cut(s) | 677 |
| BstV1I | GCAGC | 9 cut(s) | 17, 130, 295, 561, 2692, 3204, 3302, 3439, 3823 |
| BstV2I | GAAGAC | 4 cut(s) | 260, 712, 2295, 2433 |
| BstX2I | RGATCY | 3 cut(s) | 2410, 2550, 3700 |
| BstYI | RGATCY | 3 cut(s) | 2410, 2550, 3700 |
| BstZI | CGGCCG | 1 cut(s) | 3658 |
| Bsu15I | ATCGAT | 1 cut(s) | 1885 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1851, 3071, 3305 |
| BsuI | GTATCC | 1 cut(s) | 2612 |
| BsuRI | GGCC | 8 cut(s) | 635, 759, 1256, 1488, 1849, 2361, 2612, 3660 |
| BsuTUI | ATCGAT | 1 cut(s) | 1885 |
| BtsI | GCAGTG | 1 cut(s) | 1875 |
| BtsIMutI | CAGTG | 7 cut(s) | 1875, 1969, 2138, 2688, 2890, 3378, 3391 |
| BveI | ACCTGC | 1 cut(s) | 1375 |
| Cac8I | GCNNGC | 4 cut(s) | 141, 1446, 1658, 2457 |
| CciI | TCATGA | 3 cut(s) | 420, 1132, 3745 |
| CfoI | GCGC | 2 cut(s) | 495, 677 |
| Cfr10I | RCCGGY | 3 cut(s) | 125, 2518, 3523 |
| Cfr13I | GGNCC | 4 cut(s) | 1487, 1809, 2392, 3301 |
| ClaI | ATCGAT | 1 cut(s) | 1885 |
| CseI | GACGC | 1 cut(s) | 2438 |
| Csp6I | GTAC | 8 cut(s) | 1395, 1522, 1662, 2030, 3119, 3580, 3597, 3830 |
| CspAI | ACCGGT | 1 cut(s) | 125 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2114, 2149, 2316, 2351 |
| CviQI | GTAC | 8 cut(s) | 1395, 1522, 1662, 2030, 3119, 3580, 3597, 3830 |
| DraI | TTTAAA | 1 cut(s) | 3840 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2743 |
| EaeI | YGGCCR | 2 cut(s) | 2610, 3658 |
| EagI | CGGCCG | 1 cut(s) | 3658 |
| Eam1104I | CTCTTC | 8 cut(s) | 144, 230, 531, 655, 688, 860, 2154, 2812 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2743 |
| EarI | CTCTTC | 8 cut(s) | 144, 230, 531, 655, 688, 860, 2154, 2812 |
| Ecl136II | GAGCTC | 1 cut(s) | 338 |
| EclXI | CGGCCG | 1 cut(s) | 3658 |
| Eco130I | CCWWGG | 3 cut(s) | 997, 2055, 2613 |
| Eco147I | AGGCCT | 2 cut(s) | 635, 2361 |
| Eco24I | GRGCYC | 2 cut(s) | 115, 340 |
| Eco31I | GGTCTC | 2 cut(s) | 146, 1175 |
| Eco32I | GATATC | 1 cut(s) | 3067 |
| Eco47I | GGWCC | 3 cut(s) | 1809, 2392, 3301 |
| Eco52I | CGGCCG | 1 cut(s) | 3658 |
| Eco53kI | GAGCTC | 1 cut(s) | 338 |
| Eco57I | CTGAAG | 5 cut(s) | 30, 168, 329, 2301, 3525 |
| Eco81I | CCTNAGG | 3 cut(s) | 1851, 3071, 3305 |
| Eco88I | CYCGRG | 1 cut(s) | 892 |
| EcoICRI | GAGCTC | 1 cut(s) | 338 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3301 |
| EcoRI | GAATTC | 1 cut(s) | 3561 |
| EcoRII | CCWGG | 1 cut(s) | 878 |
| EcoRV | GATATC | 1 cut(s) | 3067 |
| EcoT14I | CCWWGG | 3 cut(s) | 997, 2055, 2613 |
| EcoT22I | ATGCAT | 1 cut(s) | 3282 |
| EcoT38I | GRGCYC | 2 cut(s) | 115, 340 |
| ErhI | CCWWGG | 3 cut(s) | 997, 2055, 2613 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2735, 2767 |
| FaqI | GGGAC | 2 cut(s) | 305, 3334 |
| FauI | CCCGC | 1 cut(s) | 1437 |
| FauNDI | CATATG | 1 cut(s) | 2826 |
| FblI | GTMKAC | 1 cut(s) | 2586 |
| FriOI | GRGCYC | 2 cut(s) | 115, 340 |
| FspI | TGCGCA | 1 cut(s) | 494 |
| GlaI | GCGC | 2 cut(s) | 494, 676 |
| GsuI | CTGGAG | 2 cut(s) | 203, 936 |
| HaeIII | GGCC | 8 cut(s) | 635, 759, 1256, 1488, 1849, 2361, 2612, 3660 |
| HapII | CCGG | 8 cut(s) | 126, 1147, 2519, 3122, 3396, 3426, 3524, 3661 |
| HgaI | GACGC | 1 cut(s) | 2438 |
| HhaI | GCGC | 2 cut(s) | 495, 677 |
| Hin1I | GRCGYC | 1 cut(s) | 2739 |
| Hin6I | GCGC | 2 cut(s) | 493, 675 |
| HinP1I | GCGC | 2 cut(s) | 493, 675 |
| HincII | GTYRAC | 1 cut(s) | 3768 |
| HindII | GTYRAC | 1 cut(s) | 3768 |
| HindIII | AAGCTT | 2 cut(s) | 712, 948 |
| HpaII | CCGG | 8 cut(s) | 126, 1147, 2519, 3122, 3396, 3426, 3524, 3661 |
| Hpy166II | GTNNAC | 7 cut(s) | 799, 1978, 2030, 2587, 3378, 3582, 3768 |
| Hpy188I | TCNGA | 8 cut(s) | 136, 987, 1588, 1822, 2368, 2496, 3048, 3571 |
| Hpy8I | GTNNAC | 7 cut(s) | 799, 1978, 2030, 2587, 3378, 3582, 3768 |
| Hpy99I | CGWCG | 1 cut(s) | 2741 |
| HpyCH4III | ACNGT | 6 cut(s) | 928, 1792, 2070, 2683, 3325, 3386 |
| HpyCH4IV | ACGT | 2 cut(s) | 1974, 2739 |
| HpySE526I | ACGT | 2 cut(s) | 1974, 2739 |
| Hsp92I | GRCGYC | 1 cut(s) | 2739 |
| HspAI | GCGC | 2 cut(s) | 493, 675 |
| Kpn2I | TCCGGA | 1 cut(s) | 3425 |
| KpnI | GGTACC | 1 cut(s) | 3122 |
| LmnI | GCTCC | 5 cut(s) | 15, 2276, 2788, 3356, 3663 |
| Lsp1109I | GCAGC | 9 cut(s) | 17, 130, 295, 561, 2692, 3204, 3302, 3439, 3823 |
| MaeII | ACGT | 2 cut(s) | 1974, 2739 |
| MaeIII | GTNAC | 7 cut(s) | 397, 974, 1307, 3095, 3125, 3386, 3487 |
| MfeI | CAATTG | 1 cut(s) | 1733 |
| MflI | RGATCY | 3 cut(s) | 2410, 2550, 3700 |
| MhlI | GDGCHC | 5 cut(s) | 115, 340, 1974, 3422, 3538 |
| MlsI | TGGCCA | 1 cut(s) | 2612 |
| MluNI | TGGCCA | 1 cut(s) | 2612 |
| MlyI | GAGTC | 8 cut(s) | 172, 287, 426, 548, 884, 1041, 2957, 3162 |
| MmeI | TCCRAC | 1 cut(s) | 1916 |
| Mox20I | TGGCCA | 1 cut(s) | 2612 |
| Mph1103I | ATGCAT | 1 cut(s) | 3282 |
| MroI | TCCGGA | 1 cut(s) | 3425 |
| MroXI | GAANNNNTTC | 2 cut(s) | 87, 1248 |
| MscI | TGGCCA | 1 cut(s) | 2612 |
| MslI | CAYNNNNRTG | 7 cut(s) | 239, 425, 1279, 1379, 1962, 2829, 3675 |
| Msp20I | TGGCCA | 1 cut(s) | 2612 |
| MspA1I | CMGCKG | 3 cut(s) | 8, 286, 3029 |
| MspI | CCGG | 8 cut(s) | 126, 1147, 2519, 3122, 3396, 3426, 3524, 3661 |
| MspR9I | CCNGG | 2 cut(s) | 880, 3123 |
| MunI | CAATTG | 1 cut(s) | 1733 |
| Mva1269I | GAATGC | 2 cut(s) | 36, 740 |
| MvaI | CCWGG | 1 cut(s) | 880 |
| MvnI | CGCG | 1 cut(s) | 677 |
| NciI | CCSGG | 1 cut(s) | 3123 |
| NdeI | CATATG | 1 cut(s) | 2826 |
| NlaIV | GGNNCC | 3 cut(s) | 1833, 3120, 3302 |
| NmeAIII | GCCGAG | 2 cut(s) | 2129, 2494 |
| NmuCI | GTSAC | 4 cut(s) | 397, 1307, 3386, 3487 |
| NsbI | TGCGCA | 1 cut(s) | 494 |
| NsiI | ATGCAT | 1 cut(s) | 3282 |
| NspI | RCATGY | 3 cut(s) | 244, 442, 3284 |
| NspV | TTCGAA | 1 cut(s) | 610 |
| OliI | CACNNNNGTG | 1 cut(s) | 1279 |
| PagI | TCATGA | 3 cut(s) | 420, 1132, 3745 |
| PceI | AGGCCT | 2 cut(s) | 635, 2361 |
| PciI | ACATGT | 1 cut(s) | 240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 57 |
| PctI | GAATGC | 2 cut(s) | 36, 740 |
| PdmI | GAANNNNTTC | 2 cut(s) | 87, 1248 |
| PfeI | GAWTC | 8 cut(s) | 392, 487, 1882, 2051, 2144, 2402, 2491, 2924 |
| PflFI | GACNNNGTC | 1 cut(s) | 1741 |
| PinAI | ACCGGT | 1 cut(s) | 125 |
| PleI | GAGTC | 8 cut(s) | 172, 287, 425, 547, 884, 1040, 2956, 3161 |
| PpsI | GAGTC | 8 cut(s) | 172, 287, 425, 547, 884, 1040, 2956, 3161 |
| PpuMI | RGGWCCY | 1 cut(s) | 3301 |
| PscI | ACATGT | 1 cut(s) | 240 |
| PshBI | ATTAAT | 2 cut(s) | 836, 2507 |
| Psp124BI | GAGCTC | 1 cut(s) | 340 |
| Psp5II | RGGWCCY | 1 cut(s) | 3301 |
| Psp6I | CCWGG | 1 cut(s) | 878 |
| PspGI | CCWGG | 1 cut(s) | 878 |
| PspN4I | GGNNCC | 3 cut(s) | 1833, 3120, 3302 |
| PspPI | GGNCC | 4 cut(s) | 1487, 1809, 2392, 3301 |
| PspPPI | RGGWCCY | 1 cut(s) | 3301 |
| PstI | CTGCAG | 1 cut(s) | 267 |
| PsuI | RGATCY | 3 cut(s) | 2410, 2550, 3700 |
| PsyI | GACNNNGTC | 1 cut(s) | 1741 |
| PvuII | CAGCTG | 3 cut(s) | 8, 286, 3029 |
| RsaI | GTAC | 8 cut(s) | 1396, 1523, 1663, 2031, 3120, 3581, 3598, 3831 |
| RsaNI | GTAC | 8 cut(s) | 1395, 1522, 1662, 2030, 3119, 3580, 3597, 3830 |
| RseI | CAYNNNNRTG | 7 cut(s) | 239, 425, 1279, 1379, 1962, 2829, 3675 |
| SacI | GAGCTC | 1 cut(s) | 340 |
| Sau96I | GGNCC | 4 cut(s) | 1487, 1809, 2392, 3301 |
| SchI | GAGTC | 8 cut(s) | 172, 287, 426, 548, 884, 1041, 2957, 3162 |
| ScrFI | CCNGG | 2 cut(s) | 880, 3123 |
| SduI | GDGCHC | 5 cut(s) | 115, 340, 1974, 3422, 3538 |
| SfcI | CTRYAG | 6 cut(s) | 263, 1497, 1950, 2062, 2152, 2664 |
| SfuI | TTCGAA | 1 cut(s) | 610 |
| SinI | GGWCC | 3 cut(s) | 1809, 2392, 3301 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 239, 425, 1279, 1379, 1962, 2829, 3675 |
| SmlI | CTYRAG | 5 cut(s) | 412, 1073, 1087, 2006, 2625 |
| SmoI | CTYRAG | 5 cut(s) | 412, 1073, 1087, 2006, 2625 |
| SpeI | ACTAGT | 4 cut(s) | 617, 1465, 2605, 2912 |
| SseBI | AGGCCT | 2 cut(s) | 635, 2361 |
| SsiI | CCGC | 4 cut(s) | 1358, 1444, 1485, 3738 |
| SspI | AATATT | 1 cut(s) | 107 |
| SstI | GAGCTC | 1 cut(s) | 340 |
| StuI | AGGCCT | 2 cut(s) | 635, 2361 |
| StyD4I | CCNGG | 2 cut(s) | 878, 3121 |
| StyI | CCWWGG | 3 cut(s) | 997, 2055, 2613 |
| TaaI | ACNGT | 6 cut(s) | 928, 1792, 2070, 2683, 3325, 3386 |
| TaiI | ACGT | 2 cut(s) | 1977, 2742 |
| TaqII | GACCGA | 1 cut(s) | 385 |
| TatI | WGTACW | 3 cut(s) | 1394, 2029, 3596 |
| TauI | GCSGC | 2 cut(s) | 1360, 1488 |
| TfiI | GAWTC | 8 cut(s) | 392, 487, 1882, 2051, 2144, 2402, 2491, 2924 |
| TscAI | CASTG | 7 cut(s) | 1875, 1969, 2138, 2688, 2890, 3385, 3391 |
| TseFI | GTSAC | 4 cut(s) | 397, 1307, 3386, 3487 |
| TseI | GCWGC | 9 cut(s) | 5, 143, 283, 574, 2705, 3192, 3290, 3452, 3811 |
| Tsp45I | GTSAC | 4 cut(s) | 397, 1307, 3386, 3487 |
| TspGWI | ACGGA | 1 cut(s) | 66 |
| TspRI | CASTG | 7 cut(s) | 1875, 1969, 2138, 2688, 2890, 3385, 3391 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1741 |
| VpaK11BI | GGWCC | 3 cut(s) | 1809, 2392, 3301 |
| VspI | ATTAAT | 2 cut(s) | 836, 2507 |
| XapI | RAATTY | 6 cut(s) | 44, 509, 809, 1694, 1798, 3561 |
| XbaI | TCTAGA | 2 cut(s) | 1550, 3220 |
| XceI | RCATGY | 3 cut(s) | 244, 442, 3284 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1926 |
| XmiI | GTMKAC | 1 cut(s) | 2586 |
| XmnI | GAANNNNTTC | 2 cut(s) | 87, 1248 |
| ZraI | GACGTC | 1 cut(s) | 2740 |
| Zsp2I | ATGCAT | 1 cut(s) | 3282 |