Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 26 - 204 | 6.8e-27 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 299 - 378 | 1.2e-29 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 407 - 475 | 2.4e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 490 - 590 | 7.4e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 664 - 726 | 1.4e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 831 - 1075 | 1.1e-84 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3491 |
| Acc16I | TGCGCA | 1 cut(s) | 3662 |
| Acc36I | ACCTGC | 3 cut(s) | 37, 139, 3491 |
| Acc65I | GGTACC | 1 cut(s) | 1536 |
| AccB1I | GGYRCC | 2 cut(s) | 1536, 3934 |
| AccBSI | CCGCTC | 1 cut(s) | 2349 |
| AccI | GTMKAC | 2 cut(s) | 1672, 2832 |
| AciI | CCGC | 4 cut(s) | 1500, 2349, 2795, 3315 |
| AclWI | GGATC | 7 cut(s) | 478, 1961, 2096, 2405, 2472, 2558, 3239 |
| AcoI | YGGCCR | 1 cut(s) | 1312 |
| AcsI | RAATTY | 5 cut(s) | 2292, 2976, 3044, 3068, 3666 |
| AcuI | CTGAAG | 8 cut(s) | 1109, 1299, 1460, 1956, 2202, 2385, 2670, 3905 |
| AcvI | CACGTG | 1 cut(s) | 2876 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 799, 1181, 1912, 1939, 3321 |
| AflIII | ACRYGT | 2 cut(s) | 1239, 1999 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 64 |
| AjnI | CCWGG | 4 cut(s) | 309, 1574, 3226, 3937 |
| AleI | CACNNNNGTG | 2 cut(s) | 927, 1067 |
| Alw21I | GWGCWC | 6 cut(s) | 337, 527, 828, 870, 2943, 3411 |
| Alw26I | GTCTC | 5 cut(s) | 245, 1024, 3305, 3568, 3906 |
| AlwI | GGATC | 7 cut(s) | 478, 1961, 2096, 2405, 2472, 2558, 3239 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1277 |
| AoxI | GGCC | 5 cut(s) | 163, 1312, 1862, 2598, 3323 |
| ApoI | RAATTY | 5 cut(s) | 2292, 2976, 3044, 3068, 3666 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 993, 1025 |
| AseI | ATTAAT | 1 cut(s) | 3239 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1437, 2292, 3120, 3906 |
| Asp718I | GGTACC | 1 cut(s) | 1536 |
| AspLEI | GCGC | 1 cut(s) | 3663 |
| AspS9I | GGNCC | 3 cut(s) | 163, 1502, 1863 |
| AsuC2I | CCSGG | 1 cut(s) | 1082 |
| AsuII | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| AvaII | GGWCC | 1 cut(s) | 1502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2875, 2908 |
| BalI | TGGCCA | 1 cut(s) | 1314 |
| BanI | GGYRCC | 2 cut(s) | 1536, 3934 |
| BanII | GRGCYC | 3 cut(s) | 317, 870, 1907 |
| BauI | CACGAG | 1 cut(s) | 593 |
| BbrPI | CACGTG | 1 cut(s) | 2876 |
| BbsI | GAAGAC | 4 cut(s) | 657, 1287, 1334, 3564 |
| Bbv12I | GWGCWC | 6 cut(s) | 337, 527, 828, 870, 2943, 3411 |
| BbvCI | CCTCAGC | 1 cut(s) | 1255 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 332, 366 |
| BciT130I | CCWGG | 4 cut(s) | 311, 1576, 3228, 3939 |
| BciVI | GTATCC | 1 cut(s) | 120 |
| BclI | TGATCA | 2 cut(s) | 1188, 2788 |
| BcnI | CCSGG | 1 cut(s) | 1082 |
| BcoDI | GTCTC | 5 cut(s) | 245, 1024, 3305, 3568, 3906 |
| BfaI | CTAG | 6 cut(s) | 986, 2297, 2670, 2735, 3321, 3890 |
| BfmI | CTRYAG | 6 cut(s) | 135, 572, 913, 1723, 1755, 3705 |
| BfuAI | ACCTGC | 3 cut(s) | 37, 139, 3491 |
| BfuI | GTATCC | 1 cut(s) | 120 |
| BlpI | GCTNAGC | 1 cut(s) | 1103 |
| BmcAI | AGTACT | 1 cut(s) | 104 |
| Bme1390I | CCNGG | 5 cut(s) | 311, 1082, 1576, 3228, 3939 |
| Bme18I | GGWCC | 1 cut(s) | 1502 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 3 cut(s) | 163, 1502, 1863 |
| BmiI | GGNNCC | 4 cut(s) | 1538, 1904, 2871, 3936 |
| BmrFI | CCNGG | 5 cut(s) | 311, 1082, 1576, 3228, 3939 |
| BmrI | ACTGGG | 1 cut(s) | 3746 |
| BmsI | GCATC | 7 cut(s) | 175, 2266, 2322, 3084, 3259, 3648, 3856 |
| BmuI | ACTGGG | 1 cut(s) | 3746 |
| BpiI | GAAGAC | 4 cut(s) | 657, 1287, 1334, 3564 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1685, 1717 |
| BpmI | CTGGAG | 2 cut(s) | 127, 2544 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1255, 3410 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1103 |
| Bpu14I | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| BpuEI | CTTGAG | 4 cut(s) | 1233, 1689, 2846, 3494 |
| BpuMI | CCSGG | 1 cut(s) | 1082 |
| Bsa29I | ATCGAT | 1 cut(s) | 494 |
| BsaAI | YACGTR | 2 cut(s) | 1232, 2876 |
| BsaJI | CCNNGG | 5 cut(s) | 310, 613, 1575, 3227, 3813 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 378, 408, 881, 911, 2203, 2233 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 799, 1181, 1912, 1939, 3321 |
| Bse118I | RCCGGY | 1 cut(s) | 2518 |
| Bse1I | ACTGG | 6 cut(s) | 68, 110, 664, 2663, 3022, 3752 |
| Bse3DI | GCAATG | 5 cut(s) | 947, 1992, 2466, 3028, 3621 |
| BseBI | CCWGG | 4 cut(s) | 311, 1576, 3228, 3939 |
| BseCI | ATCGAT | 1 cut(s) | 494 |
| BseDI | CCNNGG | 5 cut(s) | 310, 613, 1575, 3227, 3813 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 799, 1181, 1912, 1939, 3321 |
| BseMI | GCAATG | 5 cut(s) | 947, 1992, 2466, 3028, 3621 |
| BseMII | CTCAG | 8 cut(s) | 80, 479, 1269, 1503, 2763, 3219, 3369, 3424 |
| BseNI | ACTGG | 6 cut(s) | 68, 110, 664, 2663, 3022, 3752 |
| BseRI | GAGGAG | 7 cut(s) | 633, 702, 854, 902, 1701, 1704, 2201 |
| BshFI | GGCC | 5 cut(s) | 165, 1314, 1864, 2600, 3325 |
| BshNI | GGYRCC | 2 cut(s) | 1536, 3934 |
| BshVI | ATCGAT | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 6 cut(s) | 337, 527, 828, 870, 2943, 3411 |
| BsiSI | CCGG | 3 cut(s) | 909, 1082, 2519 |
| BslFI | GGGAC | 2 cut(s) | 1585, 2690 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 799, 1181, 1912, 1939, 3321 |
| BsmAI | GTCTC | 5 cut(s) | 245, 1024, 3305, 3568, 3906 |
| BsmFI | GGGAC | 2 cut(s) | 1585, 2690 |
| BsmI | GAATGC | 2 cut(s) | 609, 3479 |
| BsnI | GGCC | 5 cut(s) | 165, 1314, 1864, 2600, 3325 |
| Bsp119I | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| Bsp1286I | GDGCHC | 8 cut(s) | 317, 337, 527, 828, 870, 1907, 2943, 3411 |
| Bsp1407I | TGTACA | 2 cut(s) | 589, 3279 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1103 |
| Bsp19I | CCATGG | 1 cut(s) | 613 |
| BspACI | CCGC | 4 cut(s) | 1500, 2349, 2795, 3315 |
| BspANI | GGCC | 5 cut(s) | 165, 1314, 1864, 2600, 3325 |
| BspCNI | CTCAG | 8 cut(s) | 81, 480, 1268, 1502, 2764, 3218, 3370, 3423 |
| BspDI | ATCGAT | 1 cut(s) | 494 |
| BspHI | TCATGA | 1 cut(s) | 2935 |
| BspLI | GGNNCC | 4 cut(s) | 1538, 1904, 2871, 3936 |
| BspMAI | CTGCAG | 4 cut(s) | 139, 576, 917, 1759 |
| BspMI | ACCTGC | 3 cut(s) | 37, 139, 3491 |
| BspPI | GGATC | 7 cut(s) | 478, 1961, 2096, 2405, 2472, 2558, 3239 |
| BspQI | GCTCTTC | 1 cut(s) | 1442 |
| BspT104I | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| BspT107I | GGYRCC | 2 cut(s) | 1536, 3934 |
| BsrBI | CCGCTC | 1 cut(s) | 2349 |
| BsrDI | GCAATG | 5 cut(s) | 947, 1992, 2466, 3028, 3621 |
| BsrFI | RCCGGY | 1 cut(s) | 2518 |
| BsrGI | TGTACA | 2 cut(s) | 589, 3279 |
| BsrI | ACTGG | 6 cut(s) | 68, 110, 664, 2663, 3022, 3752 |
| BssAI | RCCGGY | 1 cut(s) | 2518 |
| BssECI | CCNNGG | 5 cut(s) | 310, 613, 1575, 3227, 3813 |
| BssNAI | GTATAC | 1 cut(s) | 2833 |
| BssSI | CACGAG | 1 cut(s) | 593 |
| BssT1I | CCWWGG | 2 cut(s) | 613, 3813 |
| Bst1107I | GTATAC | 1 cut(s) | 2833 |
| Bst2BI | CACGAG | 1 cut(s) | 593 |
| Bst2UI | CCWGG | 4 cut(s) | 311, 1576, 3228, 3939 |
| Bst4CI | ACNGT | 8 cut(s) | 449, 729, 975, 1273, 2888, 3638, 3709, 3826 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 604, 818 |
| BstAUI | TGTACA | 2 cut(s) | 589, 3279 |
| BstBAI | YACGTR | 2 cut(s) | 1232, 2876 |
| BstBI | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| BstC8I | GCNNGC | 6 cut(s) | 173, 345, 1261, 2520, 2868, 3393 |
| BstDSI | CCRYGG | 1 cut(s) | 613 |
| BstHHI | GCGC | 1 cut(s) | 3663 |
| BstMAI | GTCTC | 5 cut(s) | 245, 1024, 3305, 3568, 3906 |
| BstNI | CCWGG | 4 cut(s) | 311, 1576, 3228, 3939 |
| BstNSI | RCATGY | 4 cut(s) | 1243, 1456, 1831, 2003 |
| BstSCI | CCNGG | 5 cut(s) | 309, 1080, 1574, 3226, 3937 |
| BstSFI | CTRYAG | 6 cut(s) | 135, 572, 913, 1723, 1755, 3705 |
| BstV2I | GAAGAC | 4 cut(s) | 657, 1287, 1334, 3564 |
| BstX2I | RGATCY | 2 cut(s) | 483, 2550 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 929, 2608, 2689, 2880 |
| BstYI | RGATCY | 2 cut(s) | 483, 2550 |
| BstZ17I | GTATAC | 1 cut(s) | 2833 |
| Bsu15I | ATCGAT | 1 cut(s) | 494 |
| BsuI | GTATCC | 1 cut(s) | 120 |
| BsuRI | GGCC | 5 cut(s) | 165, 1314, 1864, 2600, 3325 |
| BsuTUI | ATCGAT | 1 cut(s) | 494 |
| BtgI | CCRYGG | 1 cut(s) | 613 |
| BtsI | GCAGTG | 1 cut(s) | 1923 |
| BveI | ACCTGC | 3 cut(s) | 37, 139, 3491 |
| Cac8I | GCNNGC | 6 cut(s) | 173, 345, 1261, 2520, 2868, 3393 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1277 |
| CciI | TCATGA | 1 cut(s) | 2935 |
| CfoI | GCGC | 1 cut(s) | 3663 |
| Cfr10I | RCCGGY | 1 cut(s) | 2518 |
| Cfr13I | GGNCC | 3 cut(s) | 163, 1502, 1863 |
| ClaI | ATCGAT | 1 cut(s) | 494 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3635, 3670 |
| DriI | GACNNNNNGTC | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 1312 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 64 |
| Ecl136II | GAGCTC | 1 cut(s) | 868 |
| Eco130I | CCWWGG | 2 cut(s) | 613, 3813 |
| Eco147I | AGGCCT | 1 cut(s) | 3325 |
| Eco24I | GRGCYC | 3 cut(s) | 317, 870, 1907 |
| Eco47I | GGWCC | 1 cut(s) | 1502 |
| Eco53kI | GAGCTC | 1 cut(s) | 868 |
| Eco57I | CTGAAG | 8 cut(s) | 1109, 1299, 1460, 1956, 2202, 2385, 2670, 3905 |
| Eco72I | CACGTG | 1 cut(s) | 2876 |
| EcoICRI | GAGCTC | 1 cut(s) | 868 |
| EcoRI | GAATTC | 1 cut(s) | 3044 |
| EcoRII | CCWGG | 4 cut(s) | 309, 1574, 3226, 3937 |
| EcoT14I | CCWWGG | 2 cut(s) | 613, 3813 |
| EcoT22I | ATGCAT | 1 cut(s) | 3762 |
| EcoT38I | GRGCYC | 3 cut(s) | 317, 870, 1907 |
| ErhI | CCWWGG | 2 cut(s) | 613, 3813 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1082, 1114, 2537, 2569, 3456, 3488 |
| FaqI | GGGAC | 2 cut(s) | 1585, 2690 |
| FauNDI | CATATG | 3 cut(s) | 284, 646, 3387 |
| FbaI | TGATCA | 2 cut(s) | 1188, 2788 |
| FblI | GTMKAC | 2 cut(s) | 1672, 2832 |
| FriOI | GRGCYC | 3 cut(s) | 317, 870, 1907 |
| FspBI | CTAG | 6 cut(s) | 986, 2297, 2670, 2735, 3321, 3890 |
| FspI | TGCGCA | 1 cut(s) | 3662 |
| GlaI | GCGC | 1 cut(s) | 3662 |
| GsuI | CTGGAG | 2 cut(s) | 127, 2544 |
| HaeIII | GGCC | 5 cut(s) | 165, 1314, 1864, 2600, 3325 |
| HapII | CCGG | 3 cut(s) | 909, 1082, 2519 |
| HhaI | GCGC | 1 cut(s) | 3663 |
| Hin6I | GCGC | 1 cut(s) | 3661 |
| HinP1I | GCGC | 1 cut(s) | 3661 |
| HincII | GTYRAC | 1 cut(s) | 2508 |
| HindII | GTYRAC | 1 cut(s) | 2508 |
| HindIII | AAGCTT | 6 cut(s) | 1321, 1605, 2085, 2430, 3346, 3737 |
| HpaI | GTTAAC | 1 cut(s) | 2508 |
| HpaII | CCGG | 3 cut(s) | 909, 1082, 2519 |
| HpyCH4III | ACNGT | 8 cut(s) | 449, 729, 975, 1273, 2888, 3638, 3709, 3826 |
| HpyCH4IV | ACGT | 6 cut(s) | 331, 861, 1231, 2116, 2875, 3787 |
| HpySE526I | ACGT | 6 cut(s) | 331, 861, 1231, 2116, 2875, 3787 |
| HspAI | GCGC | 1 cut(s) | 3661 |
| KpnI | GGTACC | 1 cut(s) | 1540 |
| KroI | GCCGGC | 1 cut(s) | 2518 |
| KroNI | GCCGGC | 1 cut(s) | 2520 |
| Ksp22I | TGATCA | 2 cut(s) | 1188, 2788 |
| KspAI | GTTAAC | 1 cut(s) | 2508 |
| LguI | GCTCTTC | 1 cut(s) | 1442 |
| LweI | GCATC | 7 cut(s) | 175, 2266, 2322, 3084, 3259, 3648, 3856 |
| MaeI | CTAG | 6 cut(s) | 986, 2297, 2670, 2735, 3321, 3890 |
| MaeII | ACGT | 6 cut(s) | 331, 861, 1231, 2116, 2875, 3787 |
| MbiI | CCGCTC | 1 cut(s) | 2349 |
| MfeI | CAATTG | 7 cut(s) | 338, 423, 1115, 1748, 2481, 2535, 3219 |
| MflI | RGATCY | 2 cut(s) | 483, 2550 |
| MhlI | GDGCHC | 8 cut(s) | 317, 337, 527, 828, 870, 1907, 2943, 3411 |
| MlsI | TGGCCA | 1 cut(s) | 1314 |
| MluNI | TGGCCA | 1 cut(s) | 1314 |
| MlyI | GAGTC | 4 cut(s) | 1056, 2246, 2853, 3307 |
| MmeI | TCCRAC | 4 cut(s) | 1815, 2438, 2699, 3398 |
| Mox20I | TGGCCA | 1 cut(s) | 1314 |
| Mph1103I | ATGCAT | 1 cut(s) | 3762 |
| MroNI | GCCGGC | 1 cut(s) | 2518 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1437, 2292, 3120, 3906 |
| MscI | TGGCCA | 1 cut(s) | 1314 |
| MseI | TTAA | 8 cut(s) | 1629, 1713, 2507, 2556, 2825, 3239, 3350, 3420 |
| MslI | CAYNNNNRTG | 7 cut(s) | 927, 1067, 2390, 2687, 2878, 3338, 3780 |
| Msp20I | TGGCCA | 1 cut(s) | 1314 |
| MspA1I | CMGCKG | 2 cut(s) | 8, 1964 |
| MspI | CCGG | 3 cut(s) | 909, 1082, 2519 |
| MspR9I | CCNGG | 5 cut(s) | 311, 1082, 1576, 3228, 3939 |
| MunI | CAATTG | 7 cut(s) | 338, 423, 1115, 1748, 2481, 2535, 3219 |
| Mva1269I | GAATGC | 2 cut(s) | 609, 3479 |
| MvaI | CCWGG | 4 cut(s) | 311, 1576, 3228, 3939 |
| NaeI | GCCGGC | 1 cut(s) | 2520 |
| NciI | CCSGG | 1 cut(s) | 1082 |
| NcoI | CCATGG | 1 cut(s) | 613 |
| NdeI | CATATG | 3 cut(s) | 284, 646, 3387 |
| NgoMIV | GCCGGC | 1 cut(s) | 2518 |
| NlaIV | GGNNCC | 4 cut(s) | 1538, 1904, 2871, 3936 |
| NmeAIII | GCCGAG | 1 cut(s) | 1813 |
| NmuCI | GTSAC | 5 cut(s) | 640, 761, 1048, 2404, 3716 |
| NsbI | TGCGCA | 1 cut(s) | 3662 |
| NsiI | ATGCAT | 1 cut(s) | 3762 |
| NspI | RCATGY | 4 cut(s) | 1243, 1456, 1831, 2003 |
| NspV | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| OliI | CACNNNNGTG | 2 cut(s) | 927, 1067 |
| PagI | TCATGA | 1 cut(s) | 2935 |
| PaqCI | CACCTGC | 1 cut(s) | 3491 |
| PceI | AGGCCT | 1 cut(s) | 3325 |
| PciI | ACATGT | 2 cut(s) | 1239, 1999 |
| PciSI | GCTCTTC | 1 cut(s) | 1442 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1785 |
| PctI | GAATGC | 2 cut(s) | 609, 3479 |
| PdiI | GCCGGC | 1 cut(s) | 2520 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1437, 2292, 3120, 3906 |
| PfeI | GAWTC | 7 cut(s) | 290, 536, 905, 1433, 2078, 2491, 3214 |
| PfoI | TCCNGGA | 1 cut(s) | 1080 |
| PleI | GAGTC | 4 cut(s) | 1055, 2245, 2853, 3306 |
| PmaCI | CACGTG | 1 cut(s) | 2876 |
| PmlI | CACGTG | 1 cut(s) | 2876 |
| PpsI | GAGTC | 4 cut(s) | 1055, 2245, 2853, 3306 |
| Ppu21I | YACGTR | 2 cut(s) | 1232, 2876 |
| PscI | ACATGT | 2 cut(s) | 1239, 1999 |
| PshBI | ATTAAT | 1 cut(s) | 3239 |
| Psp124BI | GAGCTC | 1 cut(s) | 870 |
| Psp6I | CCWGG | 4 cut(s) | 309, 1574, 3226, 3937 |
| PspCI | CACGTG | 1 cut(s) | 2876 |
| PspGI | CCWGG | 4 cut(s) | 309, 1574, 3226, 3937 |
| PspN4I | GGNNCC | 4 cut(s) | 1538, 1904, 2871, 3936 |
| PspPI | GGNCC | 3 cut(s) | 163, 1502, 1863 |
| PstI | CTGCAG | 4 cut(s) | 139, 576, 917, 1759 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1277 |
| PsuI | RGATCY | 2 cut(s) | 483, 2550 |
| PvuII | CAGCTG | 2 cut(s) | 8, 1964 |
| RseI | CAYNNNNRTG | 7 cut(s) | 927, 1067, 2390, 2687, 2878, 3338, 3780 |
| SacI | GAGCTC | 1 cut(s) | 870 |
| SapI | GCTCTTC | 1 cut(s) | 1442 |
| SaqAI | TTAA | 8 cut(s) | 1629, 1713, 2507, 2556, 2825, 3239, 3350, 3420 |
| Sau96I | GGNCC | 3 cut(s) | 163, 1502, 1863 |
| ScaI | AGTACT | 1 cut(s) | 104 |
| SchI | GAGTC | 4 cut(s) | 1056, 2246, 2853, 3307 |
| ScrFI | CCNGG | 5 cut(s) | 311, 1082, 1576, 3228, 3939 |
| SduI | GDGCHC | 8 cut(s) | 317, 337, 527, 828, 870, 1907, 2943, 3411 |
| SfaNI | GCATC | 7 cut(s) | 175, 2266, 2322, 3084, 3259, 3648, 3856 |
| SfcI | CTRYAG | 6 cut(s) | 135, 572, 913, 1723, 1755, 3705 |
| SfuI | TTCGAA | 4 cut(s) | 352, 2145, 3743, 3900 |
| SinI | GGWCC | 1 cut(s) | 1502 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 927, 1067, 2390, 2687, 2878, 3338, 3780 |
| SmlI | CTYRAG | 4 cut(s) | 1248, 1704, 2861, 3473 |
| SmoI | CTYRAG | 4 cut(s) | 1248, 1704, 2861, 3473 |
| SseBI | AGGCCT | 1 cut(s) | 3325 |
| SsiI | CCGC | 4 cut(s) | 1500, 2349, 2795, 3315 |
| SspMI | CTAG | 6 cut(s) | 986, 2297, 2670, 2735, 3321, 3890 |
| SstI | GAGCTC | 1 cut(s) | 870 |
| StuI | AGGCCT | 1 cut(s) | 3325 |
| StyD4I | CCNGG | 5 cut(s) | 309, 1080, 1574, 3226, 3937 |
| StyI | CCWWGG | 2 cut(s) | 613, 3813 |
| TaaI | ACNGT | 8 cut(s) | 449, 729, 975, 1273, 2888, 3638, 3709, 3826 |
| TaiI | ACGT | 6 cut(s) | 334, 864, 1234, 2119, 2878, 3790 |
| TatI | WGTACW | 7 cut(s) | 102, 589, 1071, 3279, 3306, 3524, 3701 |
| TfiI | GAWTC | 7 cut(s) | 290, 536, 905, 1433, 2078, 2491, 3214 |
| Tru1I | TTAA | 8 cut(s) | 1629, 1713, 2507, 2556, 2825, 3239, 3350, 3420 |
| Tru9I | TTAA | 8 cut(s) | 1629, 1713, 2507, 2556, 2825, 3239, 3350, 3420 |
| TseFI | GTSAC | 5 cut(s) | 640, 761, 1048, 2404, 3716 |
| Tsp45I | GTSAC | 5 cut(s) | 640, 761, 1048, 2404, 3716 |
| TspGWI | ACGGA | 1 cut(s) | 2871 |
| VpaK11BI | GGWCC | 1 cut(s) | 1502 |
| VspI | ATTAAT | 1 cut(s) | 3239 |
| XapI | RAATTY | 5 cut(s) | 2292, 2976, 3044, 3068, 3666 |
| XbaI | TCTAGA | 1 cut(s) | 2296 |
| XceI | RCATGY | 4 cut(s) | 1243, 1456, 1831, 2003 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1813, 1857, 2670 |
| XmiI | GTMKAC | 2 cut(s) | 1672, 2832 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1437, 2292, 3120, 3906 |
| XspI | CTAG | 6 cut(s) | 986, 2297, 2670, 2735, 3321, 3890 |
| ZrmI | AGTACT | 1 cut(s) | 104 |
| Zsp2I | ATGCAT | 1 cut(s) | 3762 |