Rw6G001410

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000154
Physical Location & Seq
Forward (+)
2160438 .. 2163293
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001410.1

Sequence Viewer

Length: 987 bp
ATGATTTATTTTCTTGGTATCGAAGTGATGCAAAGTGAGAAGGGAATTTTTATCTCACAAAGGAAGTATGCTGGAGACATCCTCAAACGTTTTAAGATGGAGTTTTGCAACCCAATCTTAACTCCAGTTGAACAGAGATTGAAATTGAAGAAAGATGGTAGTGGCGAGTTTGTTAATCCCACACGATACAAGCAACTTGTTGGGAGTTTGCGCTACTTGACGGCTACCAGACCTGACATCACATTTGGAGTTGGACTGATAAGTAGATTCAAGGAGTCTCCTCGTCAATCACATATGCAGGCAGCAAAAAGAATACTGAGATATGTCAAAGGAACTCAAAGTGATGGTATTTTCTATGCAGCTCACTGTCTGAATGAACTTGTTGGATACACAGATAGTGATTGGGCAGGAGATGAAAAGGCAAAGAGCACCTCAGGCTATGTTTTTGATATTGGTTCTGGTGTTATATGTTGGTCTTCAAAGAAGCAGCAAGTGGTAGCACTTTCATCAGCTGAAGCAGAGTATGTTGCAGCAAATAGGTGTGCTACTCATGCAATTTGGCTGCGTCGAATTCTTGGAAACTTGCACCAAGAACAGAAAAATCCTACAACAATCTTCTGTGATAATAACTCAGCAATCTCATTGTCAAAGAATCCAGTTTTTCATGAGAGGACAAAGCATATTCATGCCAAGCATCATTACATTCGAGATTTGGTGAAGATGAAAGAAGTTGCAGTCCACTATTGCCCATCTGGAGATCAAATAGCTGATATATTTACAAAGCCTCTGAAAACAGTTGCTTTCTTGAAGCTGAAAGAGTTAATGGGGATGATGAGCCATTCAAGAAGTGAAAGGCCATGCAGCAAGCCAATTATCATCGCACAGAGAGCGGTCTACCATGGAAAACAAAAATTTTCACGTTCAACCATGATTGACGTGGGAAAGGTTCCATGGAGATCAACATCCACTAGAACTCTCGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

328

Amino Acids

37.21

Weight (kDa)

9.78

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 890
AccI GTMKAC 1 cut(s) 894
AciI CCGC 1 cut(s) 890
AclI AACGTT 1 cut(s) 88
AcsI RAATTY 3 cut(s) 45, 570, 911
AcuI CTGAAG 1 cut(s) 534
AgsI TTSAA 8 cut(s) 131, 142, 148, 271, 480, 808, 843, 924
AjiI CACGTC 1 cut(s) 937
AluBI AGCT 4 cut(s) 362, 512, 767, 811
AluI AGCT 4 cut(s) 362, 512, 767, 811
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 69, 282
AoxI GGCC 1 cut(s) 854
ApeKI GCWGC 6 cut(s) 302, 359, 487, 530, 562, 861
ApoI RAATTY 3 cut(s) 45, 570, 911
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 727
AxyI CCTNAGG 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 6 cut(s) 314, 371, 499, 542, 549, 873
BccI CCATC 4 cut(s) 91, 149, 338, 757
BceAI ACGGC 1 cut(s) 237
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 69, 282
BfaI CTAG 1 cut(s) 969
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 6 cut(s) 303, 360, 488, 531, 563, 862
BlsI GCNGC 6 cut(s) 304, 361, 489, 532, 564, 863
BmgBI CACGTC 1 cut(s) 937
BmiI GGNNCC 1 cut(s) 948
BmsI GCATC 2 cut(s) 18, 703
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 3 cut(s) 93, 108, 774
BsaBI GATNNNNATC 1 cut(s) 961
BsaJI CCNNGG 2 cut(s) 898, 950
Bse1I ACTGG 2 cut(s) 125, 656
Bse21I CCTNAGG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 961
BseDI CCNNGG 2 cut(s) 898, 950
BseGI GGATG 3 cut(s) 78, 834, 962
BseJI GATNNNNATC 1 cut(s) 961
BseMII CTCAG 3 cut(s) 308, 447, 645
BseNI ACTGG 2 cut(s) 125, 656
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 6 cut(s) 314, 371, 499, 542, 549, 873
BshFI GGCC 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 69, 282
BsnI GGCC 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 757, 956
Bsp19I CCATGG 2 cut(s) 898, 950
BspACI CCGC 1 cut(s) 890
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 3 cut(s) 309, 446, 644
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 948
BsrBI CCGCTC 1 cut(s) 890
BsrI ACTGG 2 cut(s) 125, 656
BssECI CCNNGG 2 cut(s) 898, 950
BssMI GATC 2 cut(s) 757, 956
BssT1I CCWWGG 2 cut(s) 898, 950
Bst4CI ACNGT 2 cut(s) 368, 796
BstC8I GCNNGC 2 cut(s) 300, 866
BstDEI CTNAG 3 cut(s) 317, 433, 631
BstDSI CCRYGG 2 cut(s) 898, 950
BstF5I GGATG 3 cut(s) 78, 834, 962
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 2 cut(s) 760, 959
BstMAI GTCTC 2 cut(s) 69, 282
BstMBI GATC 2 cut(s) 757, 956
BstMWI GCNNNNNNNGC 3 cut(s) 435, 551, 887
BstV1I GCAGC 6 cut(s) 314, 371, 499, 542, 549, 873
BstV2I GAAGAC 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 856
BtgI CCRYGG 2 cut(s) 898, 950
BtgZI GCGATG 1 cut(s) 862
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 3 cut(s) 78, 834, 962
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 300, 866
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 213
CseI GACGC 1 cut(s) 554
CviAII CATG 7 cut(s) 551, 665, 686, 858, 899, 928, 951
DdeI CTNAG 3 cut(s) 317, 433, 631
DpnI GATC 2 cut(s) 759, 958
DpnII GATC 2 cut(s) 757, 956
Eco130I CCWWGG 2 cut(s) 898, 950
Eco57I CTGAAG 1 cut(s) 534
Eco81I CCTNAGG 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 898, 950
ErhI CCWWGG 2 cut(s) 898, 950
FaeI CATG 7 cut(s) 554, 668, 689, 861, 902, 931, 954
FatI CATG 7 cut(s) 550, 664, 685, 857, 898, 927, 950
FauNDI CATATG 1 cut(s) 294
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 6 cut(s) 303, 360, 488, 531, 563, 862
FokI GGATG 3 cut(s) 65, 841, 949
Fsp4HI GCNGC 6 cut(s) 303, 360, 488, 531, 563, 862
FspBI CTAG 1 cut(s) 969
GlaI GCGC 1 cut(s) 212
GluI GCNGC 6 cut(s) 303, 360, 488, 531, 563, 862
GsuI CTGGAG 3 cut(s) 93, 108, 774
HaeIII GGCC 1 cut(s) 856
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 213
Hin1II CATG 7 cut(s) 554, 668, 689, 861, 902, 931, 954
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 3 cut(s) 267, 275, 652
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 2 cut(s) 739, 895
Hpy188I TCNGA 2 cut(s) 372, 789
Hpy188III TCNNGA 5 cut(s) 665, 707, 753, 805, 843
Hpy8I GTNNAC 2 cut(s) 739, 895
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 368, 796
HpyCH4IV ACGT 3 cut(s) 88, 919, 936
HpyCH4V TGCA 9 cut(s) 31, 108, 298, 359, 530, 554, 586, 734, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 551, 887
HpyF3I CTNAG 3 cut(s) 317, 433, 631
HpySE526I ACGT 3 cut(s) 88, 919, 936
Hsp92II CATG 7 cut(s) 554, 668, 689, 861, 902, 931, 954
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 757, 956
Lsp1109I GCAGC 6 cut(s) 314, 371, 499, 542, 549, 873
LweI GCATC 2 cut(s) 18, 703
MaeI CTAG 1 cut(s) 969
MaeII ACGT 3 cut(s) 88, 919, 936
MalI GATC 2 cut(s) 759, 958
MbiI CCGCTC 1 cut(s) 890
MboI GATC 2 cut(s) 757, 956
MboII GAAGA 4 cut(s) 160, 468, 607, 730
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 6 cut(s) 45, 143, 555, 570, 870, 911
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 232, 364
MnlI CCTC 5 cut(s) 92, 291, 442, 663, 795
MseI TTAA 4 cut(s) 93, 119, 174, 821
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 435, 551, 887
NcoI CCATGG 2 cut(s) 898, 950
NdeI CATATG 1 cut(s) 294
NdeII GATC 2 cut(s) 757, 956
NlaIII CATG 7 cut(s) 554, 668, 689, 861, 902, 931, 954
NlaIV GGNNCC 1 cut(s) 948
PagI TCATGA 1 cut(s) 664
PfeI GAWTC 2 cut(s) 267, 652
PkrI GCNGC 6 cut(s) 304, 361, 489, 532, 564, 863
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 948
PvuII CAGCTG 1 cut(s) 512
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 4 cut(s) 93, 119, 174, 821
SatI GCNGC 6 cut(s) 303, 360, 488, 531, 563, 862
Sau3AI GATC 2 cut(s) 757, 956
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 2 cut(s) 18, 703
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 6 cut(s) 45, 143, 555, 570, 870, 911
SsiI CCGC 1 cut(s) 890
SspMI CTAG 1 cut(s) 969
StyI CCWWGG 2 cut(s) 898, 950
TaaI ACNGT 2 cut(s) 368, 796
TaiI ACGT 3 cut(s) 91, 922, 939
TaqI TCGA 3 cut(s) 21, 568, 706
TasI AATT 6 cut(s) 45, 143, 555, 570, 870, 911
TfiI GAWTC 2 cut(s) 267, 652
Tru1I TTAA 4 cut(s) 93, 119, 174, 821
Tru9I TTAA 4 cut(s) 93, 119, 174, 821
TscAI CASTG 1 cut(s) 371
TseI GCWGC 6 cut(s) 302, 359, 487, 530, 562, 861
TspDTI ATGAA 6 cut(s) 390, 429, 495, 653, 674, 737
TspRI CASTG 1 cut(s) 371
XapI RAATTY 3 cut(s) 45, 570, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 894
XspI CTAG 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.