ribonuclease H protein At1g65750
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 145 | 2.3e-38 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 227 |
| AccI | GTMKAC | 1 cut(s) | 491 |
| AclWI | GGATC | 1 cut(s) | 431 |
| AcsI | RAATTY | 4 cut(s) | 107, 274, 330, 340 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 761 |
| AfaI | GTAC | 2 cut(s) | 518, 532 |
| AflIII | ACRYGT | 1 cut(s) | 797 |
| AgsI | TTSAA | 4 cut(s) | 380, 555, 579, 813 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 583, 615 |
| AluBI | AGCT | 4 cut(s) | 86, 282, 770, 860 |
| AluI | AGCT | 4 cut(s) | 86, 282, 770, 860 |
| Alw21I | GWGCWC | 1 cut(s) | 722 |
| AlwI | GGATC | 1 cut(s) | 431 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| ApeKI | GCWGC | 1 cut(s) | 767 |
| ApoI | RAATTY | 4 cut(s) | 107, 274, 330, 340 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 384, 888 |
| AsuC2I | CCSGG | 1 cut(s) | 677 |
| AsuII | TTCGAA | 1 cut(s) | 328 |
| Bbv12I | GWGCWC | 1 cut(s) | 722 |
| BbvI | GCAGC | 1 cut(s) | 779 |
| BccI | CCATC | 1 cut(s) | 341 |
| BcnI | CCSGG | 1 cut(s) | 677 |
| BfaI | CTAG | 1 cut(s) | 279 |
| BisI | GCNGC | 1 cut(s) | 768 |
| BlsI | GCNGC | 1 cut(s) | 769 |
| Bme1390I | CCNGG | 1 cut(s) | 677 |
| BmrFI | CCNGG | 1 cut(s) | 677 |
| BmsI | GCATC | 1 cut(s) | 688 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| Bpu14I | TTCGAA | 1 cut(s) | 328 |
| BpuMI | CCSGG | 1 cut(s) | 677 |
| BsaJI | CCNNGG | 1 cut(s) | 675 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 756, 786 |
| Bse3DI | GCAATG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 1 cut(s) | 675 |
| BseMI | GCAATG | 1 cut(s) | 101 |
| BseXI | GCAGC | 1 cut(s) | 779 |
| BsiHKAI | GWGCWC | 1 cut(s) | 722 |
| BsiSI | CCGG | 1 cut(s) | 677 |
| BsmI | GAATGC | 1 cut(s) | 610 |
| Bsp119I | TTCGAA | 1 cut(s) | 328 |
| Bsp1286I | GDGCHC | 1 cut(s) | 722 |
| Bsp1407I | TGTACA | 2 cut(s) | 516, 530 |
| Bsp143I | GATC | 3 cut(s) | 112, 436, 595 |
| BspPI | GGATC | 1 cut(s) | 431 |
| BspT104I | TTCGAA | 1 cut(s) | 328 |
| BsrDI | GCAATG | 1 cut(s) | 101 |
| BsrGI | TGTACA | 2 cut(s) | 516, 530 |
| BssECI | CCNNGG | 1 cut(s) | 675 |
| BssMI | GATC | 3 cut(s) | 112, 436, 595 |
| BssNAI | GTATAC | 1 cut(s) | 492 |
| Bst1107I | GTATAC | 1 cut(s) | 492 |
| Bst4CI | ACNGT | 1 cut(s) | 847 |
| Bst6I | CTCTTC | 1 cut(s) | 586 |
| BstAUI | TGTACA | 2 cut(s) | 516, 530 |
| BstBI | TTCGAA | 1 cut(s) | 328 |
| BstDEI | CTNAG | 4 cut(s) | 90, 335, 566, 838 |
| BstKTI | GATC | 3 cut(s) | 115, 439, 598 |
| BstMBI | GATC | 3 cut(s) | 112, 436, 595 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 857 |
| BstNSI | RCATGY | 3 cut(s) | 223, 422, 801 |
| BstSCI | CCNGG | 1 cut(s) | 675 |
| BstV1I | GCAGC | 1 cut(s) | 779 |
| BstZ17I | GTATAC | 1 cut(s) | 492 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| Csp6I | GTAC | 2 cut(s) | 517, 531 |
| CviAII | CATG | 5 cut(s) | 101, 220, 419, 777, 798 |
| CviJI | RGCY | 7 cut(s) | 86, 282, 561, 770, 836, 860, 868 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 282, 561, 770, 836, 860, 868 |
| CviQI | GTAC | 2 cut(s) | 517, 531 |
| DdeI | CTNAG | 4 cut(s) | 90, 335, 566, 838 |
| DpnI | GATC | 3 cut(s) | 114, 438, 597 |
| DpnII | GATC | 3 cut(s) | 112, 436, 595 |
| DraIII | CACNNNGTG | 1 cut(s) | 761 |
| Eam1104I | CTCTTC | 1 cut(s) | 586 |
| EarI | CTCTTC | 1 cut(s) | 586 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| EcoRI | GAATTC | 2 cut(s) | 330, 340 |
| EcoT22I | ATGCAT | 1 cut(s) | 164 |
| FaeI | CATG | 5 cut(s) | 104, 223, 422, 780, 801 |
| FatI | CATG | 5 cut(s) | 100, 219, 418, 776, 797 |
| FblI | GTMKAC | 1 cut(s) | 491 |
| Fnu4HI | GCNGC | 1 cut(s) | 768 |
| Fsp4HI | GCNGC | 1 cut(s) | 768 |
| FspBI | CTAG | 1 cut(s) | 279 |
| GluI | GCNGC | 1 cut(s) | 768 |
| HapII | CCGG | 1 cut(s) | 677 |
| Hin1II | CATG | 5 cut(s) | 104, 223, 422, 780, 801 |
| HinfI | GANTC | 2 cut(s) | 316, 821 |
| HpaII | CCGG | 1 cut(s) | 677 |
| Hpy166II | GTNNAC | 2 cut(s) | 416, 492 |
| Hpy188I | TCNGA | 3 cut(s) | 346, 409, 826 |
| Hpy188III | TCNNGA | 2 cut(s) | 35, 881 |
| Hpy8I | GTNNAC | 2 cut(s) | 416, 492 |
| HpyAV | CCTTC | 2 cut(s) | 8, 680 |
| HpyCH4III | ACNGT | 1 cut(s) | 847 |
| HpyCH4IV | ACGT | 1 cut(s) | 808 |
| HpyCH4V | TGCA | 4 cut(s) | 51, 162, 422, 701 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 857 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 335, 566, 838 |
| HpySE526I | ACGT | 1 cut(s) | 808 |
| Hsp92II | CATG | 5 cut(s) | 104, 223, 422, 780, 801 |
| Kzo9I | GATC | 3 cut(s) | 112, 436, 595 |
| LmnI | GCTCC | 3 cut(s) | 91, 717, 764 |
| LpnPI | CCDG | 4 cut(s) | 24, 690, 699, 866 |
| Lsp1109I | GCAGC | 1 cut(s) | 779 |
| LweI | GCATC | 1 cut(s) | 688 |
| MaeI | CTAG | 1 cut(s) | 279 |
| MaeII | ACGT | 1 cut(s) | 808 |
| MaeIII | GTNAC | 1 cut(s) | 424 |
| MalI | GATC | 3 cut(s) | 114, 438, 597 |
| MboI | GATC | 3 cut(s) | 112, 436, 595 |
| MboII | GAAGA | 3 cut(s) | 479, 603, 896 |
| MfeI | CAATTG | 1 cut(s) | 482 |
| MhlI | GDGCHC | 1 cut(s) | 722 |
| MluCI | AATT | 8 cut(s) | 53, 107, 274, 330, 340, 482, 526, 703 |
| Mph1103I | ATGCAT | 1 cut(s) | 164 |
| MroXI | GAANNNNTTC | 2 cut(s) | 384, 888 |
| MseI | TTAA | 8 cut(s) | 60, 78, 171, 252, 611, 623, 632, 870 |
| MslI | CAYNNNNRTG | 1 cut(s) | 603 |
| MspA1I | CMGCKG | 1 cut(s) | 770 |
| MspI | CCGG | 1 cut(s) | 677 |
| MspR9I | CCNGG | 1 cut(s) | 677 |
| MunI | CAATTG | 1 cut(s) | 482 |
| Mva1269I | GAATGC | 1 cut(s) | 610 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 857 |
| NciI | CCSGG | 1 cut(s) | 677 |
| NdeII | GATC | 3 cut(s) | 112, 436, 595 |
| NlaIII | CATG | 5 cut(s) | 104, 223, 422, 780, 801 |
| NsiI | ATGCAT | 1 cut(s) | 164 |
| NspI | RCATGY | 3 cut(s) | 223, 422, 801 |
| NspV | TTCGAA | 1 cut(s) | 328 |
| PciI | ACATGT | 1 cut(s) | 797 |
| PctI | GAATGC | 1 cut(s) | 610 |
| PdmI | GAANNNNTTC | 2 cut(s) | 384, 888 |
| PfeI | GAWTC | 2 cut(s) | 316, 821 |
| PkrI | GCNGC | 1 cut(s) | 769 |
| PscI | ACATGT | 1 cut(s) | 797 |
| PsiI | TTATAA | 1 cut(s) | 227 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 793, 825 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| PvuII | CAGCTG | 1 cut(s) | 770 |
| RsaI | GTAC | 2 cut(s) | 518, 532 |
| RsaNI | GTAC | 2 cut(s) | 517, 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 603 |
| SaqAI | TTAA | 8 cut(s) | 60, 78, 171, 252, 611, 623, 632, 870 |
| SatI | GCNGC | 1 cut(s) | 768 |
| Sau3AI | GATC | 3 cut(s) | 112, 436, 595 |
| ScrFI | CCNGG | 1 cut(s) | 677 |
| SduI | GDGCHC | 1 cut(s) | 722 |
| SfaNI | GCATC | 1 cut(s) | 688 |
| SfuI | TTCGAA | 1 cut(s) | 328 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 603 |
| Sse9I | AATT | 8 cut(s) | 53, 107, 274, 330, 340, 482, 526, 703 |
| SspMI | CTAG | 1 cut(s) | 279 |
| StyD4I | CCNGG | 1 cut(s) | 675 |
| TaaI | ACNGT | 1 cut(s) | 847 |
| TaiI | ACGT | 1 cut(s) | 811 |
| TaqI | TCGA | 2 cut(s) | 111, 328 |
| TasI | AATT | 8 cut(s) | 53, 107, 274, 330, 340, 482, 526, 703 |
| TatI | WGTACW | 2 cut(s) | 516, 530 |
| TfiI | GAWTC | 2 cut(s) | 316, 821 |
| Tru1I | TTAA | 8 cut(s) | 60, 78, 171, 252, 611, 623, 632, 870 |
| Tru9I | TTAA | 8 cut(s) | 60, 78, 171, 252, 611, 623, 632, 870 |
| TseI | GCWGC | 1 cut(s) | 767 |
| TspDTI | ATGAA | 7 cut(s) | 117, 162, 305, 434, 539, 659, 870 |
| XapI | RAATTY | 4 cut(s) | 107, 274, 330, 340 |
| XceI | RCATGY | 3 cut(s) | 223, 422, 801 |
| XmiI | GTMKAC | 1 cut(s) | 491 |
| XmnI | GAANNNNTTC | 2 cut(s) | 384, 888 |
| XspI | CTAG | 1 cut(s) | 279 |
| Zsp2I | ATGCAT | 1 cut(s) | 164 |