Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1173 |
| AccBSI | CCGCTC | 1 cut(s) | 342 |
| AccI | GTMKAC | 1 cut(s) | 1994 |
| AccII | CGCG | 2 cut(s) | 210, 1502 |
| AciI | CCGC | 5 cut(s) | 223, 263, 342, 465, 1658 |
| AclI | AACGTT | 1 cut(s) | 1021 |
| AclWI | GGATC | 3 cut(s) | 422, 1639, 1868 |
| AcuI | CTGAAG | 2 cut(s) | 723, 1595 |
| AcyI | GRCGYC | 1 cut(s) | 1170 |
| AdeI | CACNNNGTG | 1 cut(s) | 1247 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1116, 1192 |
| AgsI | TTSAA | 8 cut(s) | 106, 1055, 1201, 1387, 1459, 1477, 1621, 1906 |
| AjnI | CCWGG | 2 cut(s) | 151, 1828 |
| AluBI | AGCT | 9 cut(s) | 65, 424, 683, 785, 944, 1142, 1165, 1281, 1579 |
| AluI | AGCT | 9 cut(s) | 65, 424, 683, 785, 944, 1142, 1165, 1281, 1579 |
| Alw26I | GTCTC | 2 cut(s) | 441, 1899 |
| AlwI | GGATC | 3 cut(s) | 422, 1639, 1868 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 578 |
| AoxI | GGCC | 1 cut(s) | 355 |
| ApeKI | GCWGC | 4 cut(s) | 569, 1162, 2009, 2012 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 711 |
| AspLEI | GCGC | 2 cut(s) | 210, 212 |
| AspS9I | GGNCC | 1 cut(s) | 296 |
| AsuC2I | CCSGG | 2 cut(s) | 1118, 1447 |
| AsuHPI | GGTGA | 6 cut(s) | 479, 559, 845, 1259, 1529, 1680 |
| AvaII | GGWCC | 1 cut(s) | 296 |
| AxyI | CCTNAGG | 2 cut(s) | 327, 687 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1807, 1840 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| BbvCI | CCTCAGC | 1 cut(s) | 1143 |
| BbvI | GCAGC | 4 cut(s) | 581, 1174, 1996, 1999 |
| BccI | CCATC | 7 cut(s) | 51, 71, 130, 901, 1004, 1622, 2024 |
| BceAI | ACGGC | 1 cut(s) | 2000 |
| BciT130I | CCWGG | 2 cut(s) | 153, 1830 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BclI | TGATCA | 1 cut(s) | 1369 |
| BcnI | CCSGG | 2 cut(s) | 1118, 1447 |
| BcoDI | GTCTC | 2 cut(s) | 441, 1899 |
| BfaI | CTAG | 5 cut(s) | 425, 717, 1166, 1776, 2044 |
| BfmI | CTRYAG | 3 cut(s) | 91, 481, 1641 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BisI | GCNGC | 5 cut(s) | 570, 1163, 1659, 2010, 2013 |
| BlsI | GCNGC | 5 cut(s) | 571, 1164, 1660, 2011, 2014 |
| BmcAI | AGTACT | 3 cut(s) | 513, 1918, 1978 |
| Bme1390I | CCNGG | 4 cut(s) | 153, 1118, 1447, 1830 |
| Bme18I | GGWCC | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 1 cut(s) | 296 |
| BmiI | GGNNCC | 1 cut(s) | 521 |
| BmrFI | CCNGG | 4 cut(s) | 153, 1118, 1447, 1830 |
| BmsI | GCATC | 4 cut(s) | 250, 1318, 1739, 1930 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 896, 928 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1143 |
| BpuMI | CCSGG | 2 cut(s) | 1118, 1447 |
| Bsa29I | ATCGAT | 1 cut(s) | 1071 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1363 |
| BsaHI | GRCGYC | 1 cut(s) | 1170 |
| BsaJI | CCNNGG | 4 cut(s) | 292, 1304, 1446, 1829 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1006, 1036 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1116, 1192 |
| Bse118I | RCCGGY | 1 cut(s) | 1093 |
| Bse1I | ACTGG | 4 cut(s) | 408, 728, 1495, 1987 |
| Bse21I | CCTNAGG | 2 cut(s) | 327, 687 |
| Bse3DI | GCAATG | 2 cut(s) | 864, 968 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1363 |
| BseBI | CCWGG | 2 cut(s) | 153, 1830 |
| BseCI | ATCGAT | 1 cut(s) | 1071 |
| BseDI | CCNNGG | 4 cut(s) | 292, 1304, 1446, 1829 |
| BseGI | GGATG | 9 cut(s) | 62, 82, 141, 1435, 1633, 1754, 1945, 1961, 2035 |
| BseJI | GATNNNNATC | 1 cut(s) | 1363 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1116, 1192 |
| BseMI | GCAATG | 2 cut(s) | 864, 968 |
| BseMII | CTCAG | 3 cut(s) | 318, 678, 1134 |
| BseNI | ACTGG | 4 cut(s) | 408, 728, 1495, 1987 |
| BsePI | GCGCGC | 1 cut(s) | 208 |
| BseRI | GAGGAG | 2 cut(s) | 96, 1265 |
| BseXI | GCAGC | 4 cut(s) | 581, 1174, 1996, 1999 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| Bsh1236I | CGCG | 2 cut(s) | 210, 1502 |
| BshFI | GGCC | 1 cut(s) | 357 |
| BshVI | ATCGAT | 1 cut(s) | 1071 |
| BsiSI | CCGG | 3 cut(s) | 1094, 1117, 1446 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1116, 1192 |
| BsmAI | GTCTC | 2 cut(s) | 441, 1899 |
| BsmI | GAATGC | 1 cut(s) | 1331 |
| BsnI | GGCC | 1 cut(s) | 357 |
| Bsp1407I | TGTACA | 1 cut(s) | 552 |
| Bsp143I | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| Bsp68I | TCGCGA | 1 cut(s) | 1502 |
| BspACI | CCGC | 5 cut(s) | 223, 263, 342, 465, 1658 |
| BspANI | GGCC | 1 cut(s) | 357 |
| BspCNI | CTCAG | 3 cut(s) | 319, 679, 1135 |
| BspDI | ATCGAT | 1 cut(s) | 1071 |
| BspFNI | CGCG | 2 cut(s) | 210, 1502 |
| BspHI | TCATGA | 1 cut(s) | 1863 |
| BspLI | GGNNCC | 1 cut(s) | 521 |
| BspPI | GGATC | 3 cut(s) | 422, 1639, 1868 |
| BsrBI | CCGCTC | 1 cut(s) | 342 |
| BsrDI | GCAATG | 2 cut(s) | 864, 968 |
| BsrFI | RCCGGY | 1 cut(s) | 1093 |
| BsrGI | TGTACA | 1 cut(s) | 552 |
| BsrI | ACTGG | 4 cut(s) | 408, 728, 1495, 1987 |
| BssAI | RCCGGY | 1 cut(s) | 1093 |
| BssECI | CCNNGG | 4 cut(s) | 292, 1304, 1446, 1829 |
| BssHII | GCGCGC | 1 cut(s) | 208 |
| BssMI | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| BssNAI | GTATAC | 1 cut(s) | 1995 |
| BssNI | GRCGYC | 1 cut(s) | 1170 |
| BssT1I | CCWWGG | 1 cut(s) | 1304 |
| Bst1107I | GTATAC | 1 cut(s) | 1995 |
| Bst2UI | CCWGG | 2 cut(s) | 153, 1830 |
| Bst4CI | ACNGT | 5 cut(s) | 92, 293, 300, 1653, 1999 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 537 |
| BstACI | GRCGYC | 1 cut(s) | 1170 |
| BstAUI | TGTACA | 1 cut(s) | 552 |
| BstC8I | GCNNGC | 5 cut(s) | 43, 63, 210, 422, 567 |
| BstDEI | CTNAG | 8 cut(s) | 327, 515, 645, 687, 879, 945, 1143, 1534 |
| BstDSI | CCRYGG | 1 cut(s) | 292 |
| BstF5I | GGATG | 9 cut(s) | 62, 82, 141, 1435, 1633, 1754, 1945, 1961, 2035 |
| BstFNI | CGCG | 2 cut(s) | 210, 1502 |
| BstHHI | GCGC | 2 cut(s) | 210, 212 |
| BstKTI | GATC | 7 cut(s) | 16, 430, 601, 1372, 1467, 1634, 1863 |
| BstMAI | GTCTC | 2 cut(s) | 441, 1899 |
| BstMBI | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1287, 1949 |
| BstNI | CCWGG | 2 cut(s) | 153, 1830 |
| BstSCI | CCNGG | 4 cut(s) | 151, 1116, 1445, 1828 |
| BstSFI | CTRYAG | 3 cut(s) | 91, 481, 1641 |
| BstUI | CGCG | 2 cut(s) | 210, 1502 |
| BstV1I | GCAGC | 4 cut(s) | 581, 1174, 1996, 1999 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 1 cut(s) | 427 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1311 |
| BstYI | RGATCY | 1 cut(s) | 427 |
| BstZ17I | GTATAC | 1 cut(s) | 1995 |
| Bsu15I | ATCGAT | 1 cut(s) | 1071 |
| Bsu36I | CCTNAGG | 2 cut(s) | 327, 687 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuRI | GGCC | 1 cut(s) | 357 |
| BsuTUI | ATCGAT | 1 cut(s) | 1071 |
| BtgI | CCRYGG | 1 cut(s) | 292 |
| BtgZI | GCGATG | 1 cut(s) | 1517 |
| BtsCI | GGATG | 9 cut(s) | 62, 82, 141, 1435, 1633, 1754, 1945, 1961, 2035 |
| BtsI | GCAGTG | 3 cut(s) | 1316, 1372, 1803 |
| BtsIMutI | CAGTG | 7 cut(s) | 309, 415, 735, 1316, 1372, 1803, 2004 |
| BtuMI | TCGCGA | 1 cut(s) | 1502 |
| Cac8I | GCNNGC | 5 cut(s) | 43, 63, 210, 422, 567 |
| CaiI | CAGNNNCTG | 1 cut(s) | 578 |
| CciI | TCATGA | 1 cut(s) | 1863 |
| CfoI | GCGC | 2 cut(s) | 210, 212 |
| Cfr10I | RCCGGY | 1 cut(s) | 1093 |
| Cfr13I | GGNCC | 1 cut(s) | 296 |
| ClaI | ATCGAT | 1 cut(s) | 1071 |
| CseI | GACGC | 1 cut(s) | 1725 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1101, 1136 |
| DdeI | CTNAG | 8 cut(s) | 327, 515, 645, 687, 879, 945, 1143, 1534 |
| DpnI | GATC | 7 cut(s) | 15, 429, 600, 1371, 1466, 1633, 1862 |
| DpnII | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| DraI | TTTAAA | 1 cut(s) | 1669 |
| DraIII | CACNNNGTG | 1 cut(s) | 1247 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 537 |
| EarI | CTCTTC | 2 cut(s) | 30, 537 |
| Eco130I | CCWWGG | 1 cut(s) | 1304 |
| Eco147I | AGGCCT | 1 cut(s) | 357 |
| Eco47I | GGWCC | 1 cut(s) | 296 |
| Eco57I | CTGAAG | 2 cut(s) | 723, 1595 |
| Eco81I | CCTNAGG | 2 cut(s) | 327, 687 |
| EcoRII | CCWGG | 2 cut(s) | 151, 1828 |
| EcoT14I | CCWWGG | 1 cut(s) | 1304 |
| EcoT22I | ATGCAT | 1 cut(s) | 1333 |
| ErhI | CCWWGG | 1 cut(s) | 1304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1517, 1549 |
| FauNDI | CATATG | 1 cut(s) | 391 |
| FbaI | TGATCA | 1 cut(s) | 1369 |
| FblI | GTMKAC | 1 cut(s) | 1994 |
| Fnu4HI | GCNGC | 5 cut(s) | 570, 1163, 1659, 2010, 2013 |
| FokI | GGATG | 9 cut(s) | 69, 89, 148, 1442, 1640, 1761, 1952, 1968, 2042 |
| Fsp4HI | GCNGC | 5 cut(s) | 570, 1163, 1659, 2010, 2013 |
| FspBI | CTAG | 5 cut(s) | 425, 717, 1166, 1776, 2044 |
| GlaI | GCGC | 2 cut(s) | 209, 211 |
| GluI | GCNGC | 5 cut(s) | 570, 1163, 1659, 2010, 2013 |
| HaeIII | GGCC | 1 cut(s) | 357 |
| HapII | CCGG | 3 cut(s) | 1094, 1117, 1446 |
| HgaI | GACGC | 1 cut(s) | 1725 |
| HhaI | GCGC | 2 cut(s) | 210, 212 |
| Hin1I | GRCGYC | 1 cut(s) | 1170 |
| Hin6I | GCGC | 2 cut(s) | 208, 210 |
| HinP1I | GCGC | 2 cut(s) | 208, 210 |
| HincII | GTYRAC | 1 cut(s) | 822 |
| HindII | GTYRAC | 1 cut(s) | 822 |
| HindIII | AAGCTT | 1 cut(s) | 1577 |
| HinfI | GANTC | 8 cut(s) | 50, 196, 404, 827, 872, 911, 1068, 1617 |
| HpaI | GTTAAC | 1 cut(s) | 822 |
| HpaII | CCGG | 3 cut(s) | 1094, 1117, 1446 |
| HphI | GGTGA | 6 cut(s) | 479, 559, 845, 1259, 1529, 1680 |
| Hpy166II | GTNNAC | 7 cut(s) | 296, 397, 779, 822, 836, 1773, 1995 |
| Hpy188I | TCNGA | 5 cut(s) | 201, 631, 1369, 1575, 1974 |
| Hpy8I | GTNNAC | 7 cut(s) | 296, 397, 779, 822, 836, 1773, 1995 |
| Hpy99I | CGWCG | 1 cut(s) | 763 |
| HpyAV | CCTTC | 7 cut(s) | 112, 655, 958, 1195, 1196, 1501, 1597 |
| HpyCH4III | ACNGT | 5 cut(s) | 92, 293, 300, 1653, 1999 |
| HpyCH4IV | ACGT | 2 cut(s) | 1021, 1170 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1287, 1949 |
| HpyF3I | CTNAG | 8 cut(s) | 327, 515, 645, 687, 879, 945, 1143, 1534 |
| HpySE526I | ACGT | 2 cut(s) | 1021, 1170 |
| Hsp92I | GRCGYC | 1 cut(s) | 1170 |
| HspAI | GCGC | 2 cut(s) | 208, 210 |
| Ksp22I | TGATCA | 1 cut(s) | 1369 |
| KspAI | GTTAAC | 1 cut(s) | 822 |
| Kzo9I | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| LmnI | GCTCC | 5 cut(s) | 339, 519, 688, 1014, 1159 |
| Lsp1109I | GCAGC | 4 cut(s) | 581, 1174, 1996, 1999 |
| LweI | GCATC | 4 cut(s) | 250, 1318, 1739, 1930 |
| MaeI | CTAG | 5 cut(s) | 425, 717, 1166, 1776, 2044 |
| MaeII | ACGT | 2 cut(s) | 1021, 1170 |
| MaeIII | GTNAC | 4 cut(s) | 7, 730, 1022, 1379 |
| MalI | GATC | 7 cut(s) | 15, 429, 600, 1371, 1466, 1633, 1862 |
| MbiI | CCGCTC | 1 cut(s) | 342 |
| MboI | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| MflI | RGATCY | 1 cut(s) | 427 |
| MluCI | AATT | 6 cut(s) | 97, 147, 285, 623, 1670, 1960 |
| MlyI | GAGTC | 4 cut(s) | 44, 190, 413, 905 |
| MmeI | TCCRAC | 1 cut(s) | 1726 |
| Mph1103I | ATGCAT | 1 cut(s) | 1333 |
| MroXI | GAANNNNTTC | 1 cut(s) | 711 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1214, 1336 |
| MspA1I | CMGCKG | 1 cut(s) | 785 |
| MspI | CCGG | 3 cut(s) | 1094, 1117, 1446 |
| MspR9I | CCNGG | 4 cut(s) | 153, 1118, 1447, 1830 |
| Mva1269I | GAATGC | 1 cut(s) | 1331 |
| MvaI | CCWGG | 2 cut(s) | 153, 1830 |
| MvnI | CGCG | 2 cut(s) | 210, 1502 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1287, 1949 |
| NciI | CCSGG | 2 cut(s) | 1118, 1447 |
| NdeI | CATATG | 1 cut(s) | 391 |
| NdeII | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| NlaIV | GGNNCC | 1 cut(s) | 521 |
| NmuCI | GTSAC | 2 cut(s) | 7, 730 |
| NruI | TCGCGA | 1 cut(s) | 1502 |
| NsiI | ATGCAT | 1 cut(s) | 1333 |
| PacI | TTAATTAA | 1 cut(s) | 288 |
| PagI | TCATGA | 1 cut(s) | 1863 |
| PauI | GCGCGC | 1 cut(s) | 208 |
| PceI | AGGCCT | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 1331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 711 |
| PfeI | GAWTC | 4 cut(s) | 827, 872, 1068, 1617 |
| PfoI | TCCNGGA | 1 cut(s) | 151 |
| PkrI | GCNGC | 5 cut(s) | 571, 1164, 1660, 2011, 2014 |
| PleI | GAGTC | 4 cut(s) | 44, 190, 412, 905 |
| PpsI | GAGTC | 4 cut(s) | 44, 190, 412, 905 |
| Psp1406I | AACGTT | 1 cut(s) | 1021 |
| Psp6I | CCWGG | 2 cut(s) | 151, 1828 |
| PspGI | CCWGG | 2 cut(s) | 151, 1828 |
| PspN4I | GGNNCC | 1 cut(s) | 521 |
| PspPI | GGNCC | 1 cut(s) | 296 |
| PstNI | CAGNNNCTG | 1 cut(s) | 578 |
| PsuI | RGATCY | 1 cut(s) | 427 |
| PteI | GCGCGC | 1 cut(s) | 208 |
| PvuII | CAGCTG | 1 cut(s) | 785 |
| RruI | TCGCGA | 1 cut(s) | 1502 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1214, 1336 |
| SatI | GCNGC | 5 cut(s) | 570, 1163, 1659, 2010, 2013 |
| Sau3AI | GATC | 7 cut(s) | 13, 427, 598, 1369, 1464, 1631, 1860 |
| Sau96I | GGNCC | 1 cut(s) | 296 |
| ScaI | AGTACT | 3 cut(s) | 513, 1918, 1978 |
| SchI | GAGTC | 4 cut(s) | 44, 190, 413, 905 |
| ScrFI | CCNGG | 4 cut(s) | 153, 1118, 1447, 1830 |
| SfaNI | GCATC | 4 cut(s) | 250, 1318, 1739, 1930 |
| SfcI | CTRYAG | 3 cut(s) | 91, 481, 1641 |
| SinI | GGWCC | 1 cut(s) | 296 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1214, 1336 |
| Sse9I | AATT | 6 cut(s) | 97, 147, 285, 623, 1670, 1960 |
| SseBI | AGGCCT | 1 cut(s) | 357 |
| SsiI | CCGC | 5 cut(s) | 223, 263, 342, 465, 1658 |
| SspMI | CTAG | 5 cut(s) | 425, 717, 1166, 1776, 2044 |
| StuI | AGGCCT | 1 cut(s) | 357 |
| StyD4I | CCNGG | 4 cut(s) | 151, 1116, 1445, 1828 |
| StyI | CCWWGG | 1 cut(s) | 1304 |
| TaaI | ACNGT | 5 cut(s) | 92, 293, 300, 1653, 1999 |
| TaiI | ACGT | 2 cut(s) | 1024, 1173 |
| TaqI | TCGA | 7 cut(s) | 16, 69, 439, 761, 1071, 1467, 1634 |
| TasI | AATT | 6 cut(s) | 97, 147, 285, 623, 1670, 1960 |
| TatI | WGTACW | 5 cut(s) | 511, 552, 1772, 1916, 1976 |
| TauI | GCSGC | 1 cut(s) | 1661 |
| TfiI | GAWTC | 4 cut(s) | 827, 872, 1068, 1617 |
| TscAI | CASTG | 7 cut(s) | 309, 415, 735, 1316, 1379, 1803, 2004 |
| TseFI | GTSAC | 2 cut(s) | 7, 730 |
| TseI | GCWGC | 4 cut(s) | 569, 1162, 2009, 2012 |
| Tsp45I | GTSAC | 2 cut(s) | 7, 730 |
| TspRI | CASTG | 7 cut(s) | 309, 415, 735, 1316, 1379, 1803, 2004 |
| VpaK11BI | GGWCC | 1 cut(s) | 296 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 249, 1117 |
| XmiI | GTMKAC | 1 cut(s) | 1994 |
| XmnI | GAANNNNTTC | 1 cut(s) | 711 |
| XspI | CTAG | 5 cut(s) | 425, 717, 1166, 1776, 2044 |
| ZraI | GACGTC | 1 cut(s) | 1171 |
| ZrmI | AGTACT | 3 cut(s) | 513, 1918, 1978 |
| Zsp2I | ATGCAT | 1 cut(s) | 1333 |