RchiOBHm_Chr3g0470191

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000154
Physical Location & Seq
Reverse (-)
16119817 .. 16120557
741 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43601

Sequence Viewer

Length: 735 bp
ATGACTGATATGGGAAGGATGAGGTTCTTTCTTGGCTTGGAAGTTTTACAAAAGGAGGATGGGATCTTTGTTTGTCAAAGGCATTATGCCTTGGAAGTTCTCAAGAGGTTTGGTATGGAGGATAGTAATGGAGTGATGAATCCAATTGTTCCTGGAGTCAAGTTAGGCAGAGATGGAGGTGGCGTTAGAGTTAATGAGACCTACTTCAAACAAATTGTTGGAAGTCTCATGTACATTACTGCTTCGAGGCCTGATTTGATGTTTGTTGTTAGCCTAATTAGCAGGTTCATGTCACAGCCAACAGAGTTACATTTCCAAGCAGCTAAGAGGGTGTTGAGATACTTGAAGGAAACTGTTAATTATGGCATATTTTACAAGAAGGAGGGAAACAATAAACTCATTGCTTATACTGATAGTGATTATGTCGGAGACTTGGAGGATCGAAAGAGCACGTCAGGTTATGTGTTTATGCTTAGTGGAGGTGTTGTGTCATGGTCGTCGAAGAAGCAGCCTATAGTTACTCTTTCGACCACCGAGGCAGAATATGTAGCTGCTGCAGCTTGTGCTTGTCAAGCAATCTGGGTAAGAAGGATCTTGGAGAAAATGAATTATGTTCAAGATGGAGGTATCATTATGATGTGTGACAACAGTTCTACCATTAAGCTTTCAAAGAATCCAGTGCTTCATGGGCGTAGCAAACACATTGACGTAGGGCTGGGCACGGGCCGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

244

Amino Acids

27.32

Weight (kDa)

9.18

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 50 1.8e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AclWI GGATC 3 cut(s) 71, 447, 599
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 4 cut(s) 208, 346, 617, 669
AjiI CACGTC 1 cut(s) 453
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 323, 551, 560, 664
AluI AGCT 4 cut(s) 323, 551, 560, 664
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 3 cut(s) 191, 230, 423
AlwI GGATC 3 cut(s) 71, 447, 599
AoxI GGCC 2 cut(s) 248, 724
ApeKI GCWGC 5 cut(s) 320, 508, 551, 554, 557
AspS9I GGNCC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 722
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 5 cut(s) 332, 520, 538, 541, 569
BccI CCATC 3 cut(s) 53, 167, 614
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 3 cut(s) 191, 230, 423
BfmI CTRYAG 2 cut(s) 513, 555
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 5 cut(s) 321, 509, 552, 555, 558
BlsI GCNGC 5 cut(s) 322, 510, 553, 556, 559
Bme1390I CCNGG 2 cut(s) 153, 728
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 724
BmrFI CCNGG 2 cut(s) 153, 728
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 728
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 90, 534
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 471, 501
Bse1I ACTGG 1 cut(s) 677
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 90, 534
BseGI GGATG 2 cut(s) 24, 64
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 677
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 5 cut(s) 332, 520, 538, 541, 569
BseYI CCCAGC 1 cut(s) 715
BshFI GGCC 2 cut(s) 250, 726
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 727
BsmAI GTCTC 3 cut(s) 191, 230, 423
BsnI GGCC 2 cut(s) 250, 726
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 452, 722
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 3 cut(s) 63, 439, 591
BspANI GGCC 2 cut(s) 250, 726
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 3 cut(s) 71, 447, 599
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 90, 534
BssMI GATC 3 cut(s) 63, 439, 591
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 355, 650
BstAPI GCANNNNNTGC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 324, 473
BstF5I GGATG 2 cut(s) 24, 64
BstKTI GATC 3 cut(s) 66, 442, 594
BstMAI GTCTC 3 cut(s) 191, 230, 423
BstMBI GATC 3 cut(s) 63, 439, 591
BstMWI GCNNNNNNNGC 5 cut(s) 279, 557, 563, 572, 688
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 726
BstSFI CTRYAG 2 cut(s) 513, 555
BstSLI GKGCMC 1 cut(s) 722
BstV1I GCAGC 5 cut(s) 332, 520, 538, 541, 569
BstX2I RGATCY 2 cut(s) 63, 591
BstYI RGATCY 2 cut(s) 63, 591
BsuRI GGCC 2 cut(s) 250, 726
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 2 cut(s) 24, 64
BtsIMutI CAGTG 1 cut(s) 684
BveI ACCTGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 229, 289, 492, 686
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 324, 473
DpnI GATC 3 cut(s) 65, 441, 593
DpnII GATC 3 cut(s) 63, 439, 591
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 232, 292, 495, 689
FatI CATG 4 cut(s) 228, 288, 491, 685
Fnu4HI GCNGC 5 cut(s) 321, 509, 552, 555, 558
FokI GGATG 2 cut(s) 31, 71
Fsp4HI GCNGC 5 cut(s) 321, 509, 552, 555, 558
GluI GCNGC 5 cut(s) 321, 509, 552, 555, 558
GsaI CCCAGC 1 cut(s) 719
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 250, 726
HapII CCGG 1 cut(s) 727
Hin1II CATG 4 cut(s) 232, 292, 495, 689
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 3 cut(s) 139, 156, 673
HpaII CCGG 1 cut(s) 727
Hpy188I TCNGA 2 cut(s) 428, 734
Hpy188III TCNNGA 2 cut(s) 103, 617
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 4 cut(s) 9, 340, 373, 582
HpyCH4III ACNGT 2 cut(s) 355, 650
HpyCH4IV ACGT 2 cut(s) 452, 708
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 5 cut(s) 279, 557, 563, 572, 688
HpyF3I CTNAG 2 cut(s) 324, 473
HpySE526I ACGT 2 cut(s) 452, 708
Hsp92II CATG 4 cut(s) 232, 292, 495, 689
Kzo9I GATC 3 cut(s) 63, 439, 591
LpnPI CCDG 8 cut(s) 138, 165, 264, 268, 441, 565, 690, 701
Lsp1109I GCAGC 5 cut(s) 332, 520, 538, 541, 569
MaeII ACGT 2 cut(s) 452, 708
MaeIII GTNAC 4 cut(s) 291, 306, 517, 641
MalI GATC 3 cut(s) 65, 441, 593
MboI GATC 3 cut(s) 63, 439, 591
MboII GAAGA 1 cut(s) 514
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 2 cut(s) 63, 591
MhlI GDGCHC 2 cut(s) 452, 722
MluCI AATT 5 cut(s) 144, 213, 276, 358, 607
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 2 cut(s) 199, 406
MseI TTAA 3 cut(s) 192, 357, 660
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 2 cut(s) 153, 728
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 5 cut(s) 279, 557, 563, 572, 688
NciI CCSGG 1 cut(s) 728
NdeII GATC 3 cut(s) 63, 439, 591
NlaIII CATG 4 cut(s) 232, 292, 495, 689
NmuCI GTSAC 2 cut(s) 291, 641
PceI AGGCCT 1 cut(s) 250
PfeI GAWTC 2 cut(s) 139, 673
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 5 cut(s) 322, 510, 553, 556, 559
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 724
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 63, 591
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 3 cut(s) 192, 357, 660
SatI GCNGC 5 cut(s) 321, 509, 552, 555, 558
Sau3AI GATC 3 cut(s) 63, 439, 591
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 2 cut(s) 153, 728
SduI GDGCHC 2 cut(s) 452, 722
SfcI CTRYAG 2 cut(s) 513, 555
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 144, 213, 276, 358, 607
SseBI AGGCCT 1 cut(s) 250
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 151, 726
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 355, 650
TaiI ACGT 2 cut(s) 455, 711
TaqI TCGA 4 cut(s) 245, 442, 500, 527
TasI AATT 5 cut(s) 144, 213, 276, 358, 607
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 139, 673
Tru1I TTAA 3 cut(s) 192, 357, 660
Tru9I TTAA 3 cut(s) 192, 357, 660
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 2 cut(s) 291, 641
TseI GCWGC 5 cut(s) 320, 508, 551, 554, 557
Tsp45I GTSAC 2 cut(s) 291, 641
TspDTI ATGAA 4 cut(s) 152, 277, 620, 674
TspRI CASTG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.