Rw0G002380

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00072
OG0000154
Physical Location & Seq
Reverse (-)
239494 .. 240750
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002380.1

Sequence Viewer

Length: 870 bp
ATGAAGGATACATGGAGAAACCAGAAGTTTCTGGTCCATTTTCTATACATGGACAATCTGCTATGCACTGGTGATAGTGGAAAGATGTTTGTAGAATTCAAACAGTCCATGTTCAAGGAGTTCAAGATGTCCGAAAATGGTCTGATGTCTTATTTTCTTGGCATGGAAGTGAAGCAAGAAAATGATGGAATTTTTATCTCTCAAAAGAAATACATGAGAGAGATTCTGGAGGAGTTCAAGATGGACAATTGTAATGCTGTTAGCACTTCTATTGCTACAGGACTCAAGTTTCTTGTCGGAAGCTTAAGATACTTGACGCTCACAAGGCCAGACATTCTCTATGAAGTTGGACTTATACGTTGTTACACAGAGACACCAAGAGAGTCTCATTGGCCAGCTGCTAAGAGGATAGTGAGATATATCCAAGGTACGCAAAATTTTGGTCTTTTTTATGCTTTTGGTGAAGATGCAAAGTTAGTTGGCTATTCGGACAGTGATTGGGGAGGTGATGAAGAGGAGACCAAAAGCACGACAGGATATGTGTTTTATCTTGCTCTTTCATCCACTGTTTGTGAGGCTATTTGGCTAAGAAACTTTTTGGAGTCACTGACTCATCTACAAGAAGAATCTACTGAGATTCACGTTGATAACAAATCAGCAATCAAACTTGCAAAGAATCCAATACAGCATGGAAGGAGCAAACATATTCATATCAGGTTCCATTTTCTAACGGACCATGTGAATAAACAGAAGACTATTAAATTGGTGTATTCTCCTACCCTGGAGCAAGTGGCTGACATCTTTACTAAGCCATTGCTAGCTGAATCCTTCAAGAAGCTACAACAAATGCTAGGTATGAAGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr RRM_1

Protein Analysis

289

Amino Acids

33.56

Weight (kDa)

7.12

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 9 - 91 1.5e-16 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 4 cut(s) 95, 189, 436, 864
AfaI GTAC 1 cut(s) 430
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 5 cut(s) 100, 115, 124, 238, 832
AjnI CCWGG 1 cut(s) 780
AluBI AGCT 4 cut(s) 303, 398, 821, 838
AluI AGCT 4 cut(s) 303, 398, 821, 838
Alw26I GTCTC 3 cut(s) 365, 390, 512
AoxI GGCC 2 cut(s) 326, 392
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 4 cut(s) 95, 189, 436, 864
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
AspS9I GGNCC 2 cut(s) 34, 733
AsuHPI GGTGA 3 cut(s) 83, 473, 518
AsuNHI GCTAGC 1 cut(s) 817
AvaII GGWCC 2 cut(s) 34, 733
BalI TGGCCA 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 758
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 179, 235
BciT130I CCWGG 1 cut(s) 782
BcoDI GTCTC 3 cut(s) 365, 390, 512
BfaI CTAG 2 cut(s) 818, 851
BfmI CTRYAG 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 2 cut(s) 34, 733
BmgT120I GGNCC 2 cut(s) 34, 733
BmiI GGNNCC 1 cut(s) 719
BmrFI CCNGG 1 cut(s) 782
BmsI GCATC 1 cut(s) 457
BmtI GCTAGC 1 cut(s) 821
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 2 cut(s) 248, 803
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 424, 780
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 812
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 424, 780
BseGI GGATG 1 cut(s) 560
BseMI GCAATG 1 cut(s) 812
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 2 cut(s) 245, 530
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 2 cut(s) 328, 394
BsmAI GTCTC 3 cut(s) 365, 390, 512
BsnI GGCC 2 cut(s) 328, 394
Bso31I GGTCTC 1 cut(s) 512
BspANI GGCC 2 cut(s) 328, 394
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 719
BspOI GCTAGC 1 cut(s) 821
BspTI CTTAAG 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 812
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 424, 780
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 105, 494, 568
Bst6I CTCTTC 1 cut(s) 507
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 396, 819
BstDEI CTNAG 4 cut(s) 402, 587, 633, 807
BstF5I GGATG 1 cut(s) 560
BstMAI GTCTC 3 cut(s) 365, 390, 512
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 758
BsuRI GGCC 2 cut(s) 328, 394
BtsCI GGATG 1 cut(s) 560
BtsIMutI CAGTG 4 cut(s) 66, 499, 564, 605
Cac8I GCNNGC 2 cut(s) 396, 819
Cfr13I GGNCC 2 cut(s) 34, 733
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 429
CviAII CATG 7 cut(s) 12, 49, 109, 163, 214, 689, 737
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 4 cut(s) 402, 587, 633, 807
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 2 cut(s) 34, 733
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 7 cut(s) 15, 52, 112, 166, 217, 692, 740
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 7 cut(s) 11, 48, 108, 162, 213, 688, 736
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 547
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 818, 851
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 248, 803
HaeIII GGCC 2 cut(s) 328, 394
HgaI GACGC 1 cut(s) 325
Hin1II CATG 7 cut(s) 15, 52, 112, 166, 217, 692, 740
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 9 cut(s) 223, 282, 383, 602, 610, 626, 637, 676, 824
HphI GGTGA 3 cut(s) 83, 473, 518
Hpy188I TCNGA 4 cut(s) 133, 144, 299, 490
Hpy188III TCNNGA 4 cut(s) 124, 227, 238, 832
HpyAV CCTTC 3 cut(s) 687, 838, 853
HpyCH4III ACNGT 3 cut(s) 105, 494, 568
HpyCH4IV ACGT 2 cut(s) 358, 642
HpyCH4V TGCA 3 cut(s) 66, 470, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 4 cut(s) 402, 587, 633, 807
HpySE526I ACGT 2 cut(s) 358, 642
Hsp92II CATG 7 cut(s) 15, 52, 112, 166, 217, 692, 740
LmnI GCTCC 2 cut(s) 696, 784
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 457
MaeI CTAG 2 cut(s) 818, 851
MaeII ACGT 2 cut(s) 358, 642
MaeIII GTNAC 2 cut(s) 362, 603
MboII GAAGA 4 cut(s) 476, 524, 635, 763
MfeI CAATTG 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 394
MluCI AATT 6 cut(s) 95, 189, 247, 436, 761, 864
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 4 cut(s) 276, 392, 604, 611
MmeI TCCRAC 2 cut(s) 277, 328
MnlI CCTC 5 cut(s) 223, 399, 497, 508, 568
Mox20I TGGCCA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 394
MseI TTAA 2 cut(s) 305, 759
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 394
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 782
MunI CAATTG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 782
MwoI GCNNNNNNNGC 1 cut(s) 325
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 7 cut(s) 15, 52, 112, 166, 217, 692, 740
NlaIV GGNNCC 1 cut(s) 719
NmuCI GTSAC 1 cut(s) 603
PfeI GAWTC 5 cut(s) 223, 626, 637, 676, 824
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 4 cut(s) 276, 391, 604, 610
PpsI GAGTC 4 cut(s) 276, 391, 604, 610
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 719
PspPI GGNCC 2 cut(s) 34, 733
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 305, 759
SatI GCNGC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 34, 733
SchI GAGTC 4 cut(s) 276, 392, 604, 611
ScrFI CCNGG 1 cut(s) 782
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 34, 733
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 284, 304
SmoI CTYRAG 2 cut(s) 284, 304
Sse9I AATT 6 cut(s) 95, 189, 247, 436, 761, 864
SspMI CTAG 2 cut(s) 818, 851
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 3 cut(s) 105, 494, 568
TaiI ACGT 2 cut(s) 361, 645
TasI AATT 6 cut(s) 95, 189, 247, 436, 761, 864
TfiI GAWTC 5 cut(s) 223, 626, 637, 676, 824
Tru1I TTAA 2 cut(s) 305, 759
Tru9I TTAA 2 cut(s) 305, 759
TscAI CASTG 4 cut(s) 73, 499, 571, 612
TseFI GTSAC 1 cut(s) 603
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 603
TspDTI ATGAA 5 cut(s) 17, 357, 525, 549, 698
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 4 cut(s) 73, 499, 571, 612
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 34, 733
XapI RAATTY 4 cut(s) 95, 189, 436, 864
XspI CTAG 2 cut(s) 818, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.