RchiOBHm_Chr1g0319901

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000154
Physical Location & Seq
Forward (+)
7546152 .. 7546853
702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55010

Sequence Viewer

Length: 303 bp
ATGGCACTAACAGAAGCTTCCGCAGAGGCATTATGGCTTAATGGATTAATGAGTGAGTTTGGAATTCAACAAGAAGCTGTGATGAAGAATGGGGTCATCAATTTGACAAGGAATCAAGTGTTTCAAGCAGAGACGAAACATGTTGATGTTCATGATCATCGCAGCGAAGATTGGGTCATCTCAAGGAAGATAACAACTGAGAAAGTTCATTCAAGGGAGAATGTCTCAGATTGTTTGACCAGGACCATTGCCATGGAGGAGTTCAAGTGTTACTTGAACCTGCTCAATCTTACAGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

5.48

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AciI CCGC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 5 cut(s) 68, 125, 213, 265, 277
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 17, 77
AluI AGCT 2 cut(s) 17, 77
Alw26I GTCTC 2 cut(s) 125, 229
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AseI ATTAAT 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 243
AvaII GGWCC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 125, 229
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 189, 240
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 125, 229
BsmBI CGTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 190, 239
BspHI TCATGA 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 198, 226
BstDSI CCRYGG 1 cut(s) 252
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 125, 229
BstMBI GATC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 2 cut(s) 143, 300
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 288
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 243
CviAII CATG 4 cut(s) 140, 152, 253, 297
CviJI RGCY 3 cut(s) 17, 37, 77
CviKI_1 RGCY 3 cut(s) 17, 37, 77
DdeI CTNAG 2 cut(s) 198, 226
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 4 cut(s) 143, 155, 256, 300
FaiI YATR 5 cut(s) 34, 141, 153, 254, 298
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 4 cut(s) 139, 151, 252, 296
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
Hin1II CATG 4 cut(s) 143, 155, 256, 300
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 198, 226
Hsp92II CATG 4 cut(s) 143, 155, 256, 300
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 226, 253, 293
Lsp1109I GCAGC 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 97, 179, 199
MluCI AATT 2 cut(s) 63, 100
MnlI CCTC 2 cut(s) 19, 250
MseI TTAA 2 cut(s) 39, 47
MslI CAYNNNNRTG 2 cut(s) 144, 251
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
NcoI CCATGG 1 cut(s) 252
NdeII GATC 1 cut(s) 154
NlaIII CATG 4 cut(s) 143, 155, 256, 300
NspI RCATGY 2 cut(s) 143, 300
PagI TCATGA 1 cut(s) 151
PciI ACATGT 1 cut(s) 139
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 164
PscI ACATGT 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspPI GGNCC 1 cut(s) 243
RseI CAYNNNNRTG 2 cut(s) 144, 251
SaqAI TTAA 2 cut(s) 39, 47
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 241
SetI ASST 3 cut(s) 19, 79, 282
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 144, 251
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 63, 100
SsiI CCGC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 252
TasI AATT 2 cut(s) 63, 100
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 39, 47
Tru9I TTAA 2 cut(s) 39, 47
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 98, 140, 197
VpaK11BI GGWCC 1 cut(s) 243
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 1 cut(s) 63
XceI RCATGY 2 cut(s) 143, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.