FvH4_6g41872

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000154
Physical Location & Seq
Reverse (-)
32796169 .. 32797169
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41872.t1

Sequence Viewer

Length: 921 bp
ATGATCATTGATTTTAAGAACTCCATGAAACAAGAGTTCGACATGACCGATCTAGGCAAGATGAGATACTTTCTTGGTGTAGAAGTGTTGCAGTGCTCAGAAGGTATATATATCAGTCAAAAGAAGTTTACAAATGAAGTGTTGGAAAGGTTCGGTTTGGAACAGTGCAATGGAGTGAGCAGTCCAATTGTTCCTGAAACTAAATTGTCAAAAGATGAGGAGGGGAGTAGAGTAGATGCCACTGCATTCAAGCAAATGGTGGGCAGCCTAATGTATCTCATTGTGACAAGACCTAATTTGATGTATGTGGTGTCACTTGCTAGTAGATACATGTCAAACCCAACTGAAATGCATTCCCAGGTTGTGAAGAGGACTCTTCGTTATGTGAAAGAGACATTAGATTTGGGTGTCTTCTACAAAAGGAGAGGTGATGCAGAGTTGAAAGGCTACATAGATAGCGATTATGTCGGCGATGTGAATGATCGGAAGAGTACGTCTAGATACATGTTTTGTTTGAGTGGAGGAGTAGTGGCATGGGCGTCCAAGAAGCAGCCAATAGTCACTCTGTCCACCACTGAAGCAGAGTACGTAGCTGCTGTGTCTTGTGCTACTCAAGGTATGTGGATGAAGAGGGTTTTAGCTAAACTTGGTCACGATTCTCTTGGAAGCTGCATTACTATTTGGTGTGATAATAGTTCAACAATCAAGCTTTCAAAGAATCCAGTTTTACATGGTCGAAGTAAGCATATTGATGTTCGTTTCCATTTCTTACGTGATCTTACCAAGGAAGGGAAAGTAAAGCTGGTTCATTGTGATTCAAAAGACCAAATGGTTGATGTTATGACCAAACCTCTCAAGCTAGACGTGTTTGAGGAGCTAAGAGAGCTGCTAGGTGTGTGCAACGTTCCAACTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 gag_pre-integrs rve

Protein Analysis

307

Amino Acids

34.65

Weight (kDa)

8.65

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 64 2.1e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 903
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 2 cut(s) 493, 587
AfiI CCNNNNNNNGG 1 cut(s) 789
AflIII ACRYGT 3 cut(s) 330, 504, 864
AgsI TTSAA 5 cut(s) 250, 442, 699, 714, 819
AjiI CACGTC 1 cut(s) 865
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 8 cut(s) 593, 641, 669, 709, 802, 859, 877, 886
AluI AGCT 8 cut(s) 593, 641, 669, 709, 802, 859, 877, 886
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 386
ApeKI GCWGC 5 cut(s) 264, 550, 593, 669, 886
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AsuHPI GGTGA 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 5 cut(s) 276, 562, 580, 656, 873
BciT130I CCWGG 1 cut(s) 359
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 5 cut(s) 53, 321, 498, 860, 890
BisI GCNGC 5 cut(s) 265, 551, 594, 670, 887
BlsI GCNGC 5 cut(s) 266, 552, 595, 671, 888
Bme1390I CCNGG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 865
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 2 cut(s) 226, 421
BpiI GAAGAC 1 cut(s) 403
BpuEI CTTGAG 2 cut(s) 597, 839
BsaAI YACGTR 2 cut(s) 589, 773
BsaHI GRCGYC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 357, 783
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse1I ACTGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 357, 783
BseGI GGATG 1 cut(s) 630
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 3 cut(s) 233, 537, 887
BseXI GCAGC 5 cut(s) 276, 562, 580, 656, 873
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 245, 352
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 4 cut(s) 3, 49, 481, 775
BspCNI CTCAG 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 357, 783
BssMI GATC 4 cut(s) 3, 49, 481, 775
BssNI GRCGYC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 783
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 165, 913
Bst6I CTCTTC 4 cut(s) 362, 381, 482, 623
BstACI GRCGYC 1 cut(s) 539
BstBAI YACGTR 2 cut(s) 589, 773
BstDEI CTNAG 2 cut(s) 97, 878
BstF5I GGATG 1 cut(s) 630
BstKTI GATC 4 cut(s) 6, 52, 484, 778
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 4 cut(s) 3, 49, 481, 775
BstMWI GCNNNNNNNGC 1 cut(s) 883
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 2 cut(s) 334, 508
BstSCI CCNGG 1 cut(s) 357
BstSNI TACGTA 1 cut(s) 589
BstV1I GCAGC 5 cut(s) 276, 562, 580, 656, 873
BstV2I GAAGAC 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 865
BtsCI GGATG 1 cut(s) 630
BtsI GCAGTG 2 cut(s) 98, 240
BtsIMutI CAGTG 4 cut(s) 98, 170, 240, 573
CseI GACGC 1 cut(s) 528
Csp6I GTAC 2 cut(s) 492, 586
CspCI CAANNNNNGTGG 2 cut(s) 602, 637
CviAII CATG 6 cut(s) 25, 43, 331, 505, 534, 731
CviQI GTAC 2 cut(s) 492, 586
DdeI CTNAG 2 cut(s) 97, 878
DpnI GATC 4 cut(s) 5, 51, 483, 777
DpnII GATC 4 cut(s) 3, 49, 481, 775
Eam1104I CTCTTC 4 cut(s) 362, 381, 482, 623
EarI CTCTTC 4 cut(s) 362, 381, 482, 623
Eco105I TACGTA 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 783
Eco57I CTGAAG 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 783
EcoT22I ATGCAT 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 6 cut(s) 28, 46, 334, 508, 537, 734
FatI CATG 6 cut(s) 24, 42, 330, 504, 533, 730
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 265, 551, 594, 670, 887
FokI GGATG 1 cut(s) 637
Fsp4HI GCNGC 5 cut(s) 265, 551, 594, 670, 887
FspBI CTAG 5 cut(s) 53, 321, 498, 860, 890
GluI GCNGC 5 cut(s) 265, 551, 594, 670, 887
HgaI GACGC 1 cut(s) 528
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 6 cut(s) 28, 46, 334, 508, 537, 734
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 373, 656, 718, 815
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 129, 570, 916
Hpy188I TCNGA 2 cut(s) 100, 486
Hpy188III TCNNGA 3 cut(s) 194, 498, 653
Hpy8I GTNNAC 3 cut(s) 129, 570, 916
HpyAV CCTTC 2 cut(s) 95, 782
HpyCH4III ACNGT 2 cut(s) 165, 913
HpyCH4IV ACGT 5 cut(s) 494, 588, 772, 864, 903
HpyCH4V TGCA 7 cut(s) 91, 168, 245, 352, 434, 672, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 883
HpyF3I CTNAG 2 cut(s) 97, 878
HpySE526I ACGT 5 cut(s) 494, 588, 772, 864, 903
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 6 cut(s) 28, 46, 334, 508, 537, 734
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 49, 481, 775
LmnI GCTCC 1 cut(s) 874
LpnPI CCDG 5 cut(s) 207, 344, 371, 735, 788
Lsp1109I GCAGC 5 cut(s) 276, 562, 580, 656, 873
LweI GCATC 2 cut(s) 226, 421
MaeI CTAG 5 cut(s) 53, 321, 498, 860, 890
MaeII ACGT 5 cut(s) 494, 588, 772, 864, 903
MaeIII GTNAC 4 cut(s) 283, 312, 559, 650
MalI GATC 4 cut(s) 5, 51, 483, 777
MboI GATC 4 cut(s) 3, 49, 481, 775
MboII GAAGA 5 cut(s) 368, 379, 403, 499, 640
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 3 cut(s) 186, 203, 295
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 211, 214, 363, 419, 515, 624, 861, 865
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 359
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 245, 352
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 883
NdeII GATC 4 cut(s) 3, 49, 481, 775
NlaIII CATG 6 cut(s) 28, 46, 334, 508, 537, 734
NmuCI GTSAC 4 cut(s) 283, 312, 559, 650
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 2 cut(s) 334, 508
PciI ACATGT 2 cut(s) 330, 504
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 245, 352
PfeI GAWTC 3 cut(s) 656, 718, 815
PkrI GCNGC 5 cut(s) 266, 552, 595, 671, 888
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 2 cut(s) 589, 773
PscI ACATGT 2 cut(s) 330, 504
Psp1406I AACGTT 1 cut(s) 903
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PsrI GAACNNNNNNTAC 2 cut(s) 789, 821
RsaI GTAC 2 cut(s) 493, 587
RsaNI GTAC 2 cut(s) 492, 586
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 5 cut(s) 265, 551, 594, 670, 887
Sau3AI GATC 4 cut(s) 3, 49, 481, 775
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 2 cut(s) 226, 421
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 2 cut(s) 612, 854
SmoI CTYRAG 2 cut(s) 612, 854
SnaBI TACGTA 1 cut(s) 589
Sse9I AATT 3 cut(s) 186, 203, 295
SspMI CTAG 5 cut(s) 53, 321, 498, 860, 890
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 2 cut(s) 165, 913
TaiI ACGT 5 cut(s) 497, 591, 775, 867, 906
TaqI TCGA 2 cut(s) 39, 736
TaqII GACCGA 1 cut(s) 62
TasI AATT 3 cut(s) 186, 203, 295
TfiI GAWTC 3 cut(s) 656, 718, 815
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 4 cut(s) 98, 170, 247, 580
TseFI GTSAC 4 cut(s) 283, 312, 559, 650
TseI GCWGC 5 cut(s) 264, 550, 593, 669, 886
Tsp45I GTSAC 4 cut(s) 283, 312, 559, 650
TspDTI ATGAA 4 cut(s) 41, 150, 641, 797
TspRI CASTG 4 cut(s) 98, 170, 247, 580
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 2 cut(s) 334, 508
XspI CTAG 5 cut(s) 53, 321, 498, 860, 890
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.