RchiOBHm_Chr1g0321811

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000154
Physical Location & Seq
Reverse (-)
9345288 .. 9346853
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55184

Sequence Viewer

Length: 1551 bp
ATGGATTCAGAAATCAAAGCTATAGAGAAGAATGATACTTGGGAGCTGACGGACCTTCTGAAAGGGCAGAAAACAATTGGTGTGAAATGGGTGTATAAAACCAAGCTCAATGAAAAGGGTGCAGTGGACAAACATAAGGCACGGTTGGTTGCAAAAGGGTACAAACAGAAGTTTGGAGTGGATTATAAGGAAGTGTTTGCTCCAGTGGCTAGGATGGATACCATTCGACTTGTGATTTCGATGGCTGCACAACACTCATGGCCTATTTACCAACTTGATGTGAAATCAGCTTTTCTGCATGGAGAGCTTCAAGAGCAGGTATATATTGATCAACCCCTTGGTTATGTGAAAAAGGGAAGTGAGGAGAAGGTATATAGGTTAAAGAAGGCTCTATACGGTCTAAAACAAGCACCACGTGCTTGGTATAGTCGTATAGATACCTACTTTTCTAATGCTGGCTTTCAAAGGTGTCCATATGAGCATACTCTCTACATTAAATCTGGAATTGCAGGAAAGTTTTTGGCGGTCTGTTTGTATGTAGACGACCTCATCTACACAGGCAATGATGATGATATGTTCACTAAATTTAAGAACTCTATGATGGCTGAGTTCGAGATGACTGATCTGGAAAGATTGCACTATTTTCTTGGTATAGAAGTACTACAATCATCGGCTGGAATTTTCATCACACAAAGAAAGTATGCTCTGGAGGTTTTGGAGAAATTTGAAATGAAGGATTGTAATGCAGTTGCAATTCCAGCAGAACCGGGATTGAAGTTAACTATGGATCCTGATGGCAAGAAAGTTGGTAGCACGTTCTTTAAGCAAATTGTTGGAAGTCTGATGTATCTTACAGCCACAAGGCCTGATATCATGCTTTCAGTAAGTCTCATTAGCAGGTTTATGGAACGTCCAACAGAGCAACATCTCCCTGCTGCAAAAAGAATCTTGCGCTATGTAAAAGGTACATTTGATTTTGGTGTTCTTTATAAGAGGGGAGAAAAGTCAGAGCTTGTTGGATTCACAGATAGTGATTATGCTGGTGATGTTAATGATAGAAGAAGCACATCTGCTTATGTTTTTATGATGGGGTCAGGACCAGTTTCATGGGCTTCAAAGAAACAGCCAATTGTGACCCTATCAACTACGGAGGCTGAGTTTGTCGCAGCAACAGCTTGTGCTAGTCAGGCCATTTGGCTGAGGAAGTTGCTTGAGGAGTTGAGTTATGAGCAACAAGGTCCAACAACAATTTATTGCGACAACATATCTGCAATCAAGCTCTCAAAGAATCTGGTTTTTCATGGAAGGAGCAAGCATATAGATGTTAGATACCACTTCTTGCGTGATCTGTGCAAGGATGGTGTGATTGATATGGTTCATTGTAGAACGGAAGATCAATTTGCAGACTTACTGACCAAGCCTCTTAGGTCAGCTGTGTTTGTAAAACTCCGAGGTCTACTGGGTGTGTGTTCAAGGAAAGAAGTGGTTGGCAATGGAGCAGATGATGGTTGCTGGAGCTTTCTATGTAAACTGATACTTAAAGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

516

Amino Acids

58.61

Weight (kDa)

8.86

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 255 1e-83 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 186, 990
Acc36I ACCTGC 2 cut(s) 307, 888
AccI GTMKAC 2 cut(s) 540, 1456
AciI CCGC 1 cut(s) 524
AclWI GGATC 2 cut(s) 782, 795
AcsI RAATTY 4 cut(s) 584, 678, 722, 1545
AcvI CACGTG 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 3 cut(s) 161, 660, 967
AgsI TTSAA 6 cut(s) 311, 464, 728, 775, 1116, 1473
Alw26I GTCTC 1 cut(s) 893
AlwI GGATC 2 cut(s) 782, 795
AoxI GGCC 3 cut(s) 260, 863, 1188
ApeKI GCWGC 3 cut(s) 245, 935, 1166
ApoI RAATTY 4 cut(s) 584, 678, 722, 1545
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 3 cut(s) 52, 1097, 1238
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 1 cut(s) 1055
AvaII GGWCC 3 cut(s) 52, 1097, 1238
BamHI GGATCC 1 cut(s) 787
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbrPI CACGTG 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 1199
BbvI GCAGC 3 cut(s) 232, 922, 1178
BccI CCATC 7 cut(s) 208, 235, 595, 788, 1081, 1352, 1499
BciVI GTATCC 1 cut(s) 211
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 2 cut(s) 210, 1182
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 2 cut(s) 307, 888
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 3 cut(s) 246, 936, 1167
BlsI GCNGC 3 cut(s) 247, 937, 1168
BmcAI AGTACT 1 cut(s) 660
Bme1390I CCNGG 1 cut(s) 768
Bme18I GGWCC 3 cut(s) 52, 1097, 1238
BmgT120I GGNCC 3 cut(s) 52, 1097, 1238
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 1 cut(s) 768
BmrI ACTGGG 1 cut(s) 1469
BmuI ACTGGG 1 cut(s) 1469
BpmI CTGGAG 3 cut(s) 186, 728, 1534
Bpu10I CCTNAGC 1 cut(s) 1199
BpuEI CTTGAG 1 cut(s) 1232
BpuMI CCSGG 1 cut(s) 768
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 337, 1450
BsaXI ACNNNNNCTCC 2 cut(s) 1142, 1172
Bse1I ACTGG 3 cut(s) 203, 1100, 1464
Bse3DI GCAATG 2 cut(s) 568, 1498
BseDI CCNNGG 2 cut(s) 337, 1450
BseGI GGATG 2 cut(s) 219, 1363
BseMI GCAATG 2 cut(s) 568, 1498
BseMII CTCAG 3 cut(s) 597, 1146, 1190
BseNI ACTGG 3 cut(s) 203, 1100, 1464
BseRI GAGGAG 2 cut(s) 377, 1229
BseXI GCAGC 3 cut(s) 232, 922, 1178
BsgI GTGCAG 2 cut(s) 141, 231
BshFI GGCC 3 cut(s) 262, 865, 1190
BsiSI CCGG 1 cut(s) 767
BsmAI GTCTC 1 cut(s) 893
BsnI GGCC 3 cut(s) 262, 865, 1190
Bsp143I GATC 5 cut(s) 328, 622, 787, 1345, 1393
BspACI CCGC 1 cut(s) 524
BspANI GGCC 3 cut(s) 262, 865, 1190
BspCNI CTCAG 3 cut(s) 598, 1147, 1191
BspLI GGNNCC 1 cut(s) 789
BspMI ACCTGC 2 cut(s) 307, 888
BspPI GGATC 2 cut(s) 782, 795
BsrDI GCAATG 2 cut(s) 568, 1498
BsrI ACTGG 3 cut(s) 203, 1100, 1464
BssECI CCNNGG 2 cut(s) 337, 1450
BssMI GATC 5 cut(s) 328, 622, 787, 1345, 1393
BssT1I CCWWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 144, 398
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 457, 1313
BstDEI CTNAG 4 cut(s) 606, 1155, 1199, 1424
BstF5I GGATG 2 cut(s) 219, 1363
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 5 cut(s) 331, 625, 790, 1348, 1396
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 5 cut(s) 328, 622, 787, 1345, 1393
BstMWI GCNNNNNNNGC 7 cut(s) 206, 304, 313, 416, 758, 1172, 1187
BstSCI CCNGG 1 cut(s) 766
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 232, 922, 1178
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 2 cut(s) 420, 1107
BstYI RGATCY 1 cut(s) 787
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 3 cut(s) 262, 865, 1190
BtsCI GGATG 2 cut(s) 219, 1363
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 210
BveI ACCTGC 2 cut(s) 307, 888
Cac8I GCNNGC 2 cut(s) 457, 1313
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 3 cut(s) 52, 1097, 1238
Csp6I GTAC 3 cut(s) 160, 659, 966
CviAII CATG 5 cut(s) 258, 299, 874, 1107, 1301
CviQI GTAC 3 cut(s) 160, 659, 966
DdeI CTNAG 4 cut(s) 606, 1155, 1199, 1424
DpnI GATC 5 cut(s) 330, 624, 789, 1347, 1395
DpnII GATC 5 cut(s) 328, 622, 787, 1345, 1393
DraIII CACNNNGTG 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 865
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 3 cut(s) 52, 1097, 1238
Eco72I CACGTG 1 cut(s) 416
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 5 cut(s) 261, 302, 877, 1110, 1304
FatI CATG 5 cut(s) 257, 298, 873, 1106, 1300
FauNDI CATATG 1 cut(s) 475
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 2 cut(s) 540, 1456
Fnu4HI GCNGC 3 cut(s) 246, 936, 1167
FokI GGATG 2 cut(s) 226, 1370
Fsp4HI GCNGC 3 cut(s) 246, 936, 1167
FspBI CTAG 2 cut(s) 210, 1182
GlaI GCGC 1 cut(s) 953
GluI GCNGC 3 cut(s) 246, 936, 1167
GsuI CTGGAG 3 cut(s) 186, 728, 1534
HaeIII GGCC 3 cut(s) 262, 865, 1190
HapII CCGG 1 cut(s) 767
HhaI GCGC 1 cut(s) 954
Hin1II CATG 5 cut(s) 261, 302, 877, 1110, 1304
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HinfI GANTC 4 cut(s) 5, 945, 1020, 1288
HpaI GTTAAC 1 cut(s) 780
HpaII CCGG 1 cut(s) 767
HphI GGTGA 1 cut(s) 1055
Hpy166II GTNNAC 6 cut(s) 127, 541, 579, 780, 1457, 1529
Hpy188I TCNGA 5 cut(s) 10, 60, 843, 1009, 1451
Hpy188III TCNNGA 7 cut(s) 311, 501, 613, 626, 707, 791, 1095
Hpy8I GTNNAC 6 cut(s) 127, 541, 579, 780, 1457, 1529
HpyAV CCTTC 5 cut(s) 65, 361, 379, 727, 1299
HpyCH4III ACNGT 2 cut(s) 144, 398
HpyCH4IV ACGT 3 cut(s) 415, 815, 910
HpyF10VI GCNNNNNNNGC 7 cut(s) 206, 304, 313, 416, 758, 1172, 1187
HpyF3I CTNAG 4 cut(s) 606, 1155, 1199, 1424
HpySE526I ACGT 3 cut(s) 415, 815, 910
Hsp92II CATG 5 cut(s) 261, 302, 877, 1110, 1304
HspAI GCGC 1 cut(s) 952
Ksp22I TGATCA 1 cut(s) 328
KspAI GTTAAC 1 cut(s) 780
Kzo9I GATC 5 cut(s) 328, 622, 787, 1345, 1393
LmnI GCTCC 5 cut(s) 43, 205, 1308, 1496, 1515
Lsp1109I GCAGC 3 cut(s) 232, 922, 1178
MaeI CTAG 2 cut(s) 210, 1182
MaeII ACGT 3 cut(s) 415, 815, 910
MaeIII GTNAC 1 cut(s) 1132
MalI GATC 5 cut(s) 330, 624, 789, 1347, 1395
MboI GATC 5 cut(s) 328, 622, 787, 1345, 1393
MboII GAAGA 3 cut(s) 40, 1071, 1403
MfeI CAATTG 2 cut(s) 75, 1128
MflI RGATCY 1 cut(s) 787
MmeI TCCRAC 4 cut(s) 814, 938, 997, 1265
MnlI CCTC 9 cut(s) 355, 557, 703, 987, 1144, 1194, 1207, 1431, 1445
MseI TTAA 8 cut(s) 380, 495, 588, 779, 822, 1050, 1539, 1549
MslI CAYNNNNRTG 1 cut(s) 1320
MspA1I CMGCKG 1 cut(s) 1433
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 768
MunI CAATTG 2 cut(s) 75, 1128
MwoI GCNNNNNNNGC 7 cut(s) 206, 304, 313, 416, 758, 1172, 1187
NciI CCSGG 1 cut(s) 768
NdeI CATATG 1 cut(s) 475
NdeII GATC 5 cut(s) 328, 622, 787, 1345, 1393
NlaIII CATG 5 cut(s) 261, 302, 877, 1110, 1304
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 1132
PceI AGGCCT 1 cut(s) 865
PfeI GAWTC 4 cut(s) 5, 945, 1020, 1288
PkrI GCNGC 3 cut(s) 247, 937, 1168
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 416
PsiI TTATAA 2 cut(s) 186, 990
PspCI CACGTG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 3 cut(s) 52, 1097, 1238
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1433
RsaI GTAC 3 cut(s) 161, 660, 967
RsaNI GTAC 3 cut(s) 160, 659, 966
RseI CAYNNNNRTG 1 cut(s) 1320
SaqAI TTAA 8 cut(s) 380, 495, 588, 779, 822, 1050, 1539, 1549
SatI GCNGC 3 cut(s) 246, 936, 1167
Sau3AI GATC 5 cut(s) 328, 622, 787, 1345, 1393
Sau96I GGNCC 3 cut(s) 52, 1097, 1238
ScaI AGTACT 1 cut(s) 660
ScrFI CCNGG 1 cut(s) 768
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 3 cut(s) 52, 1097, 1238
SmiMI CAYNNNNRTG 1 cut(s) 1320
SmlI CTYRAG 1 cut(s) 1211
SmoI CTYRAG 1 cut(s) 1211
SseBI AGGCCT 1 cut(s) 865
SsiI CCGC 1 cut(s) 524
SspMI CTAG 2 cut(s) 210, 1182
StuI AGGCCT 1 cut(s) 865
StyD4I CCNGG 1 cut(s) 766
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 144, 398
TaiI ACGT 3 cut(s) 418, 818, 913
TaqI TCGA 3 cut(s) 226, 239, 612
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 4 cut(s) 5, 945, 1020, 1288
Tru1I TTAA 8 cut(s) 380, 495, 588, 779, 822, 1050, 1539, 1549
Tru9I TTAA 8 cut(s) 380, 495, 588, 779, 822, 1050, 1539, 1549
TscAI CASTG 2 cut(s) 129, 210
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 3 cut(s) 245, 935, 1166
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 6 cut(s) 126, 673, 746, 1095, 1289, 1367
TspGWI ACGGA 3 cut(s) 65, 1163, 1403
TspRI CASTG 2 cut(s) 129, 210
VpaK11BI GGWCC 3 cut(s) 52, 1097, 1238
XapI RAATTY 4 cut(s) 584, 678, 722, 1545
XmiI GTMKAC 2 cut(s) 540, 1456
XspI CTAG 2 cut(s) 210, 1182
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.