Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 53 - 173 | 2.1e-40 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 71 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfaI | GTAC | 1 cut(s) | 395 |
| AgsI | TTSAA | 2 cut(s) | 92, 436 |
| AhlI | ACTAGT | 1 cut(s) | 184 |
| AluBI | AGCT | 9 cut(s) | 98, 108, 172, 232, 298, 335, 365, 400, 535 |
| AluI | AGCT | 9 cut(s) | 98, 108, 172, 232, 298, 335, 365, 400, 535 |
| Alw21I | GWGCWC | 1 cut(s) | 110 |
| Alw26I | GTCTC | 2 cut(s) | 38, 155 |
| AlwI | GGATC | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 2 cut(s) | 109, 462 |
| AoxI | GGCC | 1 cut(s) | 513 |
| ApeKI | GCWGC | 3 cut(s) | 98, 295, 371 |
| AspS9I | GGNCC | 1 cut(s) | 514 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AsuII | TTCGAA | 1 cut(s) | 352 |
| AvaI | CYCGRG | 2 cut(s) | 109, 462 |
| BanII | GRGCYC | 1 cut(s) | 110 |
| BbsI | GAAGAC | 1 cut(s) | 495 |
| Bbv12I | GWGCWC | 1 cut(s) | 110 |
| BbvI | GCAGC | 3 cut(s) | 85, 307, 358 |
| BccI | CCATC | 2 cut(s) | 108, 378 |
| BciVI | GTATCC | 1 cut(s) | 278 |
| BcoDI | GTCTC | 2 cut(s) | 38, 155 |
| BcuI | ACTAGT | 1 cut(s) | 184 |
| BfaI | CTAG | 2 cut(s) | 185, 362 |
| BfmI | CTRYAG | 3 cut(s) | 33, 70, 330 |
| BfuI | GTATCC | 1 cut(s) | 278 |
| BisI | GCNGC | 3 cut(s) | 99, 296, 372 |
| BlsI | GCNGC | 3 cut(s) | 100, 297, 373 |
| BmeT110I | CYCGRG | 2 cut(s) | 109, 462 |
| BmgT120I | GGNCC | 1 cut(s) | 514 |
| BpiI | GAAGAC | 1 cut(s) | 495 |
| Bpu14I | TTCGAA | 1 cut(s) | 352 |
| BpuEI | CTTGAG | 2 cut(s) | 491, 511 |
| BsaJI | CCNNGG | 1 cut(s) | 461 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 1 cut(s) | 461 |
| BseGI | GGATG | 1 cut(s) | 389 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseXI | GCAGC | 3 cut(s) | 85, 307, 358 |
| BshFI | GGCC | 1 cut(s) | 515 |
| BsiHKAI | GWGCWC | 1 cut(s) | 110 |
| BsiHKCI | CYCGRG | 2 cut(s) | 109, 462 |
| BslFI | GGGAC | 2 cut(s) | 356, 443 |
| BsmAI | GTCTC | 2 cut(s) | 38, 155 |
| BsmFI | GGGAC | 2 cut(s) | 356, 443 |
| BsnI | GGCC | 1 cut(s) | 515 |
| BsoBI | CYCGRG | 2 cut(s) | 109, 462 |
| Bsp119I | TTCGAA | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 1 cut(s) | 110 |
| Bsp143I | GATC | 1 cut(s) | 76 |
| BspANI | GGCC | 1 cut(s) | 515 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BspT104I | TTCGAA | 1 cut(s) | 352 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 461 |
| BssMI | GATC | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 404 |
| BstBI | TTCGAA | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 3 cut(s) | 376, 533, 545 |
| BstF5I | GGATG | 1 cut(s) | 389 |
| BstKTI | GATC | 1 cut(s) | 79 |
| BstMAI | GTCTC | 2 cut(s) | 38, 155 |
| BstMBI | GATC | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 332, 371 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 70, 330 |
| BstV1I | GCAGC | 3 cut(s) | 85, 307, 358 |
| BstV2I | GAAGAC | 1 cut(s) | 495 |
| BsuI | GTATCC | 1 cut(s) | 278 |
| BsuRI | GGCC | 1 cut(s) | 515 |
| BtsCI | GGATG | 1 cut(s) | 389 |
| BtsI | GCAGTG | 1 cut(s) | 450 |
| BtsIMutI | CAGTG | 2 cut(s) | 312, 450 |
| Cac8I | GCNNGC | 3 cut(s) | 376, 533, 545 |
| Cfr13I | GGNCC | 1 cut(s) | 514 |
| Csp6I | GTAC | 1 cut(s) | 394 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 255, 290 |
| CviAII | CATG | 3 cut(s) | 165, 425, 540 |
| CviQI | GTAC | 1 cut(s) | 394 |
| DpnI | GATC | 1 cut(s) | 78 |
| DpnII | GATC | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 404 |
| EarI | CTCTTC | 2 cut(s) | 36, 404 |
| Ecl136II | GAGCTC | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 110 |
| Eco53kI | GAGCTC | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco88I | CYCGRG | 2 cut(s) | 109, 462 |
| EcoICRI | GAGCTC | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 1 cut(s) | 514 |
| EcoT38I | GRGCYC | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 168, 428, 543 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FaqI | GGGAC | 2 cut(s) | 356, 443 |
| FatI | CATG | 3 cut(s) | 164, 424, 539 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 296, 372 |
| FokI | GGATG | 1 cut(s) | 396 |
| FriOI | GRGCYC | 1 cut(s) | 110 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 296, 372 |
| FspBI | CTAG | 2 cut(s) | 185, 362 |
| GluI | GCNGC | 3 cut(s) | 99, 296, 372 |
| HaeIII | GGCC | 1 cut(s) | 515 |
| Hin1II | CATG | 3 cut(s) | 168, 428, 543 |
| HincII | GTYRAC | 1 cut(s) | 253 |
| HindII | GTYRAC | 1 cut(s) | 253 |
| HinfI | GANTC | 2 cut(s) | 358, 524 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 4 cut(s) | 63, 253, 277, 394 |
| Hpy188III | TCNNGA | 2 cut(s) | 111, 508 |
| Hpy8I | GTNNAC | 4 cut(s) | 63, 253, 277, 394 |
| HpyAV | CCTTC | 3 cut(s) | 472, 505, 544 |
| HpyCH4IV | ACGT | 1 cut(s) | 179 |
| HpyCH4V | TGCA | 4 cut(s) | 326, 378, 424, 543 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 332, 371 |
| HpySE526I | ACGT | 1 cut(s) | 179 |
| Hsp92II | CATG | 3 cut(s) | 168, 428, 543 |
| Kzo9I | GATC | 1 cut(s) | 76 |
| LmnI | GCTCC | 3 cut(s) | 169, 191, 540 |
| LpnPI | CCDG | 3 cut(s) | 342, 410, 529 |
| Lsp1109I | GCAGC | 3 cut(s) | 85, 307, 358 |
| MaeI | CTAG | 2 cut(s) | 185, 362 |
| MaeII | ACGT | 1 cut(s) | 179 |
| MaeIII | GTNAC | 1 cut(s) | 180 |
| MalI | GATC | 1 cut(s) | 78 |
| MboI | GATC | 1 cut(s) | 76 |
| MboII | GAAGA | 7 cut(s) | 17, 53, 104, 166, 421, 497, 500 |
| MhlI | GDGCHC | 1 cut(s) | 110 |
| MluCI | AATT | 2 cut(s) | 49, 559 |
| MlyI | GAGTC | 1 cut(s) | 518 |
| MmeI | TCCRAC | 2 cut(s) | 114, 169 |
| MnlI | CCTC | 5 cut(s) | 16, 31, 241, 471, 547 |
| MseI | TTAA | 2 cut(s) | 150, 222 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 332, 371 |
| NdeII | GATC | 1 cut(s) | 76 |
| NlaIII | CATG | 3 cut(s) | 168, 428, 543 |
| NspV | TTCGAA | 1 cut(s) | 352 |
| PaeR7I | CTCGAG | 1 cut(s) | 109 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PkrI | GCNGC | 3 cut(s) | 100, 297, 373 |
| PleI | GAGTC | 1 cut(s) | 518 |
| PpsI | GAGTC | 1 cut(s) | 518 |
| Psp124BI | GAGCTC | 1 cut(s) | 110 |
| PspPI | GGNCC | 1 cut(s) | 514 |
| RsaI | GTAC | 1 cut(s) | 395 |
| RsaNI | GTAC | 1 cut(s) | 394 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SacI | GAGCTC | 1 cut(s) | 110 |
| SaqAI | TTAA | 2 cut(s) | 150, 222 |
| SatI | GCNGC | 3 cut(s) | 99, 296, 372 |
| Sau3AI | GATC | 1 cut(s) | 76 |
| Sau96I | GGNCC | 1 cut(s) | 514 |
| SchI | GAGTC | 1 cut(s) | 518 |
| SduI | GDGCHC | 1 cut(s) | 110 |
| SfcI | CTRYAG | 3 cut(s) | 33, 70, 330 |
| Sfr274I | CTCGAG | 1 cut(s) | 109 |
| SfuI | TTCGAA | 1 cut(s) | 352 |
| SlaI | CTCGAG | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 3 cut(s) | 109, 506, 526 |
| SmoI | CTYRAG | 3 cut(s) | 109, 506, 526 |
| SpeI | ACTAGT | 1 cut(s) | 184 |
| Sse9I | AATT | 2 cut(s) | 49, 559 |
| SspMI | CTAG | 2 cut(s) | 185, 362 |
| SstI | GAGCTC | 1 cut(s) | 110 |
| TaiI | ACGT | 1 cut(s) | 182 |
| TaqI | TCGA | 4 cut(s) | 110, 352, 402, 453 |
| TasI | AATT | 2 cut(s) | 49, 559 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| Tru1I | TTAA | 2 cut(s) | 150, 222 |
| Tru9I | TTAA | 2 cut(s) | 150, 222 |
| TscAI | CASTG | 2 cut(s) | 319, 450 |
| TseI | GCWGC | 3 cut(s) | 98, 295, 371 |
| TspDTI | ATGAA | 3 cut(s) | 422, 453, 486 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 2 cut(s) | 319, 450 |
| XhoI | CTCGAG | 1 cut(s) | 109 |
| XspI | CTAG | 2 cut(s) | 185, 362 |