Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1224 |
| AccB1I | GGYRCC | 1 cut(s) | 1224 |
| AccI | GTMKAC | 1 cut(s) | 896 |
| AciI | CCGC | 1 cut(s) | 5 |
| AclWI | GGATC | 1 cut(s) | 322 |
| AcoI | YGGCCR | 1 cut(s) | 1101 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AcyI | GRCGYC | 1 cut(s) | 1199 |
| AfaI | GTAC | 4 cut(s) | 104, 519, 638, 1226 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 97, 354, 577, 808, 869, 880 |
| AflIII | ACRYGT | 1 cut(s) | 843 |
| AgsI | TTSAA | 7 cut(s) | 196, 205, 227, 294, 657, 956, 1015 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 755 |
| AhlI | ACTAGT | 1 cut(s) | 1168 |
| AjnI | CCWGG | 1 cut(s) | 38 |
| AleI | CACNNNNGTG | 2 cut(s) | 705, 982 |
| AluBI | AGCT | 8 cut(s) | 137, 230, 335, 367, 962, 1011, 1073, 1162 |
| AluI | AGCT | 8 cut(s) | 137, 230, 335, 367, 962, 1011, 1073, 1162 |
| Alw21I | GWGCWC | 2 cut(s) | 337, 1091 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| Alw44I | GTGCAC | 1 cut(s) | 1087 |
| AlwI | GGATC | 1 cut(s) | 322 |
| AoxI | GGCC | 5 cut(s) | 66, 799, 817, 871, 1101 |
| ApaLI | GTGCAC | 1 cut(s) | 1087 |
| ApeKI | GCWGC | 3 cut(s) | 137, 367, 1162 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 389, 421 |
| AseI | ATTAAT | 1 cut(s) | 1233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 624 |
| Asp718I | GGTACC | 1 cut(s) | 1224 |
| AspS9I | GGNCC | 5 cut(s) | 66, 184, 492, 799, 1190 |
| AsuC2I | CCSGG | 1 cut(s) | 1105 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 398, 461 |
| AvaII | GGWCC | 3 cut(s) | 184, 492, 1190 |
| BaeGI | GKGCMC | 2 cut(s) | 537, 1091 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 476, 509 |
| BanI | GGYRCC | 1 cut(s) | 1224 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| Bbv12I | GWGCWC | 2 cut(s) | 337, 1091 |
| BbvI | GCAGC | 3 cut(s) | 124, 354, 1149 |
| BccI | CCATC | 4 cut(s) | 41, 784, 867, 1069 |
| BciT130I | CCWGG | 1 cut(s) | 40 |
| BciVI | GTATCC | 1 cut(s) | 120 |
| BcnI | CCSGG | 1 cut(s) | 1105 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BcuI | ACTAGT | 1 cut(s) | 1168 |
| BfaI | CTAG | 5 cut(s) | 680, 764, 821, 867, 1169 |
| BfmI | CTRYAG | 2 cut(s) | 177, 691 |
| BfuI | GTATCC | 1 cut(s) | 120 |
| BisI | GCNGC | 4 cut(s) | 6, 138, 368, 1163 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 4 cut(s) | 7, 139, 369, 1164 |
| BmcAI | AGTACT | 1 cut(s) | 104 |
| Bme1390I | CCNGG | 2 cut(s) | 40, 1105 |
| Bme18I | GGWCC | 3 cut(s) | 184, 492, 1190 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 755 |
| BmgT120I | GGNCC | 5 cut(s) | 66, 184, 492, 799, 1190 |
| BmiI | GGNNCC | 1 cut(s) | 1226 |
| BmrFI | CCNGG | 2 cut(s) | 40, 1105 |
| BmrI | ACTGGG | 1 cut(s) | 153 |
| BmsI | GCATC | 3 cut(s) | 151, 291, 932 |
| BmuI | ACTGGG | 1 cut(s) | 153 |
| BpmI | CTGGAG | 1 cut(s) | 127 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BpuEI | CTTGAG | 1 cut(s) | 542 |
| BpuMI | CCSGG | 1 cut(s) | 1105 |
| Bsa29I | ATCGAT | 1 cut(s) | 234 |
| BsaAI | YACGTR | 1 cut(s) | 640 |
| BsaHI | GRCGYC | 1 cut(s) | 1199 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 659, 689 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 97, 354, 577, 808, 869, 880 |
| Bse118I | RCCGGY | 1 cut(s) | 993 |
| Bse1I | ACTGG | 3 cut(s) | 110, 148, 609 |
| Bse3DI | GCAATG | 1 cut(s) | 988 |
| BseBI | CCWGG | 1 cut(s) | 40 |
| BseCI | ATCGAT | 1 cut(s) | 234 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseGI | GGATG | 7 cut(s) | 166, 531, 622, 742, 859, 912, 1126 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 97, 354, 577, 808, 869, 880 |
| BseMI | GCAATG | 1 cut(s) | 988 |
| BseMII | CTCAG | 3 cut(s) | 141, 350, 1013 |
| BseNI | ACTGG | 3 cut(s) | 110, 148, 609 |
| BseRI | GAGGAG | 4 cut(s) | 557, 560, 626, 680 |
| BseSI | GKGCMC | 2 cut(s) | 537, 1091 |
| BseXI | GCAGC | 3 cut(s) | 124, 354, 1149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 238 |
| BshFI | GGCC | 5 cut(s) | 68, 801, 819, 873, 1103 |
| BshNI | GGYRCC | 1 cut(s) | 1224 |
| BshVI | ATCGAT | 1 cut(s) | 234 |
| BsiEI | CGRYCG | 1 cut(s) | 238 |
| BsiHKAI | GWGCWC | 2 cut(s) | 337, 1091 |
| BsiSI | CCGG | 3 cut(s) | 994, 1104, 1202 |
| BsiWI | CGTACG | 1 cut(s) | 636 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 97, 354, 577, 808, 869, 880 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsmI | GAATGC | 1 cut(s) | 572 |
| BsnI | GGCC | 5 cut(s) | 68, 801, 819, 873, 1103 |
| Bsp1286I | GDGCHC | 3 cut(s) | 337, 537, 1091 |
| Bsp1407I | TGTACA | 1 cut(s) | 517 |
| Bsp143I | GATC | 3 cut(s) | 92, 235, 314 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspANI | GGCC | 5 cut(s) | 68, 801, 819, 873, 1103 |
| BspCNI | CTCAG | 3 cut(s) | 142, 349, 1014 |
| BspDI | ATCGAT | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 1226 |
| BspPI | GGATC | 1 cut(s) | 322 |
| BspT107I | GGYRCC | 1 cut(s) | 1224 |
| BsrDI | GCAATG | 1 cut(s) | 988 |
| BsrFI | RCCGGY | 1 cut(s) | 993 |
| BsrGI | TGTACA | 1 cut(s) | 517 |
| BsrI | ACTGG | 3 cut(s) | 110, 148, 609 |
| BssAI | RCCGGY | 1 cut(s) | 993 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssMI | GATC | 3 cut(s) | 92, 235, 314 |
| BssNI | GRCGYC | 1 cut(s) | 1199 |
| Bst2UI | CCWGG | 1 cut(s) | 40 |
| Bst4CI | ACNGT | 4 cut(s) | 424, 469, 757, 1214 |
| Bst6I | CTCTTC | 1 cut(s) | 603 |
| BstACI | GRCGYC | 1 cut(s) | 1199 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1095 |
| BstAUI | TGTACA | 1 cut(s) | 517 |
| BstBAI | YACGTR | 1 cut(s) | 640 |
| BstC8I | GCNNGC | 4 cut(s) | 30, 552, 945, 949 |
| BstDEI | CTNAG | 6 cut(s) | 96, 150, 336, 488, 1007, 1022 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 352 |
| BstF5I | GGATG | 7 cut(s) | 166, 531, 622, 742, 859, 912, 1126 |
| BstKTI | GATC | 3 cut(s) | 95, 238, 317 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 3 cut(s) | 92, 235, 314 |
| BstMCI | CGRYCG | 1 cut(s) | 238 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 146, 460, 1095 |
| BstNI | CCWGG | 1 cut(s) | 40 |
| BstNSI | RCATGY | 3 cut(s) | 554, 847, 951 |
| BstSCI | CCNGG | 2 cut(s) | 38, 1103 |
| BstSFI | CTRYAG | 2 cut(s) | 177, 691 |
| BstSLI | GKGCMC | 2 cut(s) | 537, 1091 |
| BstV1I | GCAGC | 3 cut(s) | 124, 354, 1149 |
| BstX2I | RGATCY | 1 cut(s) | 314 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 76, 707 |
| BstYI | RGATCY | 1 cut(s) | 314 |
| Bsu15I | ATCGAT | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 120 |
| BsuRI | GGCC | 5 cut(s) | 68, 801, 819, 873, 1103 |
| BsuTUI | ATCGAT | 1 cut(s) | 234 |
| BtsCI | GGATG | 7 cut(s) | 166, 531, 622, 742, 859, 912, 1126 |
| BtsIMutI | CAGTG | 2 cut(s) | 726, 1219 |
| Cac8I | GCNNGC | 4 cut(s) | 30, 552, 945, 949 |
| Cfr10I | RCCGGY | 1 cut(s) | 993 |
| Cfr13I | GGNCC | 5 cut(s) | 66, 184, 492, 799, 1190 |
| ClaI | ATCGAT | 1 cut(s) | 234 |
| CseI | GACGC | 2 cut(s) | 287, 1207 |
| Csp6I | GTAC | 4 cut(s) | 103, 518, 637, 1225 |
| CviQI | GTAC | 4 cut(s) | 103, 518, 637, 1225 |
| DdeI | CTNAG | 6 cut(s) | 96, 150, 336, 488, 1007, 1022 |
| DpnI | GATC | 3 cut(s) | 94, 237, 316 |
| DpnII | GATC | 3 cut(s) | 92, 235, 314 |
| DriI | GACNNNNNGTC | 1 cut(s) | 755 |
| EaeI | YGGCCR | 1 cut(s) | 1101 |
| Eam1104I | CTCTTC | 1 cut(s) | 603 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 755 |
| EarI | CTCTTC | 1 cut(s) | 603 |
| Ecl136II | GAGCTC | 1 cut(s) | 335 |
| Eco147I | AGGCCT | 2 cut(s) | 819, 873 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco47I | GGWCC | 3 cut(s) | 184, 492, 1190 |
| Eco53kI | GAGCTC | 1 cut(s) | 335 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 335 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 38 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 896 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 138, 368, 1163 |
| FokI | GGATG | 7 cut(s) | 173, 538, 629, 749, 846, 919, 1133 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 138, 368, 1163 |
| FspBI | CTAG | 5 cut(s) | 680, 764, 821, 867, 1169 |
| GluI | GCNGC | 4 cut(s) | 6, 138, 368, 1163 |
| GsuI | CTGGAG | 1 cut(s) | 127 |
| HaeIII | GGCC | 5 cut(s) | 68, 801, 819, 873, 1103 |
| HapII | CCGG | 3 cut(s) | 994, 1104, 1202 |
| HgaI | GACGC | 2 cut(s) | 287, 1207 |
| Hin1I | GRCGYC | 1 cut(s) | 1199 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HinfI | GANTC | 5 cut(s) | 109, 269, 290, 683, 1205 |
| HpaII | CCGG | 3 cut(s) | 994, 1104, 1202 |
| HphI | GGTGA | 3 cut(s) | 91, 398, 461 |
| Hpy166II | GTNNAC | 7 cut(s) | 82, 397, 726, 897, 1089, 1174, 1190 |
| Hpy188I | TCNGA | 4 cut(s) | 92, 114, 1131, 1180 |
| Hpy188III | TCNNGA | 2 cut(s) | 259, 680 |
| Hpy8I | GTNNAC | 7 cut(s) | 82, 397, 726, 897, 1089, 1174, 1190 |
| HpyAV | CCTTC | 4 cut(s) | 5, 373, 377, 734 |
| HpyCH4III | ACNGT | 4 cut(s) | 424, 469, 757, 1214 |
| HpyCH4IV | ACGT | 1 cut(s) | 639 |
| HpyCH4V | TGCA | 7 cut(s) | 140, 164, 275, 599, 849, 1089, 1165 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 146, 460, 1095 |
| HpyF3I | CTNAG | 6 cut(s) | 96, 150, 336, 488, 1007, 1022 |
| HpySE526I | ACGT | 1 cut(s) | 639 |
| Hsp92I | GRCGYC | 1 cut(s) | 1199 |
| KpnI | GGTACC | 1 cut(s) | 1228 |
| Kzo9I | GATC | 3 cut(s) | 92, 235, 314 |
| LmnI | GCTCC | 4 cut(s) | 460, 547, 940, 1078 |
| Lsp1109I | GCAGC | 3 cut(s) | 124, 354, 1149 |
| LweI | GCATC | 3 cut(s) | 151, 291, 932 |
| MaeI | CTAG | 5 cut(s) | 680, 764, 821, 867, 1169 |
| MaeII | ACGT | 1 cut(s) | 639 |
| MaeIII | GTNAC | 4 cut(s) | 50, 339, 695, 1195 |
| MalI | GATC | 3 cut(s) | 94, 237, 316 |
| MboI | GATC | 3 cut(s) | 92, 235, 314 |
| MboII | GAAGA | 3 cut(s) | 493, 620, 1144 |
| MfeI | CAATTG | 1 cut(s) | 980 |
| MflI | RGATCY | 1 cut(s) | 314 |
| MhlI | GDGCHC | 3 cut(s) | 337, 537, 1091 |
| MluCI | AATT | 8 cut(s) | 33, 214, 652, 731, 772, 803, 980, 1230 |
| MlyI | GAGTC | 1 cut(s) | 118 |
| MmeI | TCCRAC | 2 cut(s) | 887, 1233 |
| MroXI | GAANNNNTTC | 1 cut(s) | 624 |
| MseI | TTAA | 1 cut(s) | 1233 |
| MslI | CAYNNNNRTG | 4 cut(s) | 74, 705, 982, 1119 |
| MspI | CCGG | 3 cut(s) | 994, 1104, 1202 |
| MspR9I | CCNGG | 2 cut(s) | 40, 1105 |
| MunI | CAATTG | 1 cut(s) | 980 |
| Mva1269I | GAATGC | 1 cut(s) | 572 |
| MvaI | CCWGG | 1 cut(s) | 40 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 146, 460, 1095 |
| NciI | CCSGG | 1 cut(s) | 1105 |
| NdeII | GATC | 3 cut(s) | 92, 235, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 1226 |
| NmuCI | GTSAC | 2 cut(s) | 50, 1195 |
| NspI | RCATGY | 3 cut(s) | 554, 847, 951 |
| OliI | CACNNNNGTG | 2 cut(s) | 705, 982 |
| PaeI | GCATGC | 2 cut(s) | 554, 951 |
| PceI | AGGCCT | 2 cut(s) | 819, 873 |
| PciI | ACATGT | 1 cut(s) | 843 |
| PctI | GAATGC | 1 cut(s) | 572 |
| PdmI | GAANNNNTTC | 1 cut(s) | 624 |
| PfeI | GAWTC | 4 cut(s) | 269, 290, 683, 1205 |
| Pfl23II | CGTACG | 1 cut(s) | 636 |
| PkrI | GCNGC | 4 cut(s) | 7, 139, 369, 1164 |
| Ple19I | CGATCG | 1 cut(s) | 238 |
| PleI | GAGTC | 1 cut(s) | 117 |
| PpsI | GAGTC | 1 cut(s) | 117 |
| Ppu21I | YACGTR | 1 cut(s) | 640 |
| PscI | ACATGT | 1 cut(s) | 843 |
| PshBI | ATTAAT | 1 cut(s) | 1233 |
| Psp124BI | GAGCTC | 1 cut(s) | 337 |
| Psp6I | CCWGG | 1 cut(s) | 38 |
| PspGI | CCWGG | 1 cut(s) | 38 |
| PspLI | CGTACG | 1 cut(s) | 636 |
| PspN4I | GGNNCC | 1 cut(s) | 1226 |
| PspPI | GGNCC | 5 cut(s) | 66, 184, 492, 799, 1190 |
| PsuI | RGATCY | 1 cut(s) | 314 |
| PvuI | CGATCG | 1 cut(s) | 238 |
| RsaI | GTAC | 4 cut(s) | 104, 519, 638, 1226 |
| RsaNI | GTAC | 4 cut(s) | 103, 518, 637, 1225 |
| RseI | CAYNNNNRTG | 4 cut(s) | 74, 705, 982, 1119 |
| SacI | GAGCTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 1 cut(s) | 1233 |
| SatI | GCNGC | 4 cut(s) | 6, 138, 368, 1163 |
| Sau3AI | GATC | 3 cut(s) | 92, 235, 314 |
| Sau96I | GGNCC | 5 cut(s) | 66, 184, 492, 799, 1190 |
| ScaI | AGTACT | 1 cut(s) | 104 |
| SchI | GAGTC | 1 cut(s) | 118 |
| ScrFI | CCNGG | 2 cut(s) | 40, 1105 |
| SduI | GDGCHC | 3 cut(s) | 337, 537, 1091 |
| SfaNI | GCATC | 3 cut(s) | 151, 291, 932 |
| SfcI | CTRYAG | 2 cut(s) | 177, 691 |
| SinI | GGWCC | 3 cut(s) | 184, 492, 1190 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 74, 705, 982, 1119 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| SpeI | ACTAGT | 1 cut(s) | 1168 |
| SphI | GCATGC | 2 cut(s) | 554, 951 |
| Sse9I | AATT | 8 cut(s) | 33, 214, 652, 731, 772, 803, 980, 1230 |
| SseBI | AGGCCT | 2 cut(s) | 819, 873 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspMI | CTAG | 5 cut(s) | 680, 764, 821, 867, 1169 |
| SstI | GAGCTC | 1 cut(s) | 337 |
| StuI | AGGCCT | 2 cut(s) | 819, 873 |
| StyD4I | CCNGG | 2 cut(s) | 38, 1103 |
| TaaI | ACNGT | 4 cut(s) | 424, 469, 757, 1214 |
| TaiI | ACGT | 1 cut(s) | 642 |
| TaqI | TCGA | 1 cut(s) | 234 |
| TasI | AATT | 8 cut(s) | 33, 214, 652, 731, 772, 803, 980, 1230 |
| TatI | WGTACW | 2 cut(s) | 102, 517 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 4 cut(s) | 269, 290, 683, 1205 |
| Tru1I | TTAA | 1 cut(s) | 1233 |
| Tru9I | TTAA | 1 cut(s) | 1233 |
| TscAI | CASTG | 2 cut(s) | 733, 1219 |
| TseFI | GTSAC | 2 cut(s) | 50, 1195 |
| TseI | GCWGC | 3 cut(s) | 137, 367, 1162 |
| Tsp45I | GTSAC | 2 cut(s) | 50, 1195 |
| TspDTI | ATGAA | 7 cut(s) | 392, 452, 542, 579, 633, 753, 1232 |
| TspGWI | ACGGA | 2 cut(s) | 173, 367 |
| TspRI | CASTG | 2 cut(s) | 733, 1219 |
| VneI | GTGCAC | 1 cut(s) | 1087 |
| VpaK11BI | GGWCC | 3 cut(s) | 184, 492, 1190 |
| VspI | ATTAAT | 1 cut(s) | 1233 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 352 |
| XbaI | TCTAGA | 1 cut(s) | 679 |
| XceI | RCATGY | 3 cut(s) | 554, 847, 951 |
| XmiI | GTMKAC | 1 cut(s) | 896 |
| XmnI | GAANNNNTTC | 1 cut(s) | 624 |
| XspI | CTAG | 5 cut(s) | 680, 764, 821, 867, 1169 |
| ZrmI | AGTACT | 1 cut(s) | 104 |