gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 423 |
| AccB1I | GGYRCC | 1 cut(s) | 423 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1011 |
| AccI | GTMKAC | 1 cut(s) | 644 |
| AciI | CCGC | 1 cut(s) | 731 |
| AclWI | GGATC | 1 cut(s) | 671 |
| AcoI | YGGCCR | 1 cut(s) | 714 |
| AcsI | RAATTY | 2 cut(s) | 160, 817 |
| AcuI | CTGAAG | 2 cut(s) | 241, 429 |
| AfaI | GTAC | 2 cut(s) | 174, 425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 225, 686, 1011 |
| AflIII | ACRYGT | 1 cut(s) | 46 |
| AhlI | ACTAGT | 1 cut(s) | 979 |
| AjnI | CCWGG | 1 cut(s) | 953 |
| AluBI | AGCT | 5 cut(s) | 154, 304, 548, 622, 962 |
| AluI | AGCT | 5 cut(s) | 154, 304, 548, 622, 962 |
| Alw21I | GWGCWC | 2 cut(s) | 751, 964 |
| Alw26I | GTCTC | 1 cut(s) | 365 |
| AlwI | GGATC | 1 cut(s) | 671 |
| AoxI | GGCC | 1 cut(s) | 714 |
| ApeKI | GCWGC | 3 cut(s) | 154, 733, 922 |
| ApoI | RAATTY | 2 cut(s) | 160, 817 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 468, 981 |
| Asp718I | GGTACC | 1 cut(s) | 423 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AspS9I | GGNCC | 1 cut(s) | 1001 |
| AsuHPI | GGTGA | 2 cut(s) | 503, 536 |
| AsuII | TTCGAA | 1 cut(s) | 532 |
| AvaII | GGWCC | 1 cut(s) | 1001 |
| BanI | GGYRCC | 1 cut(s) | 423 |
| BanII | GRGCYC | 1 cut(s) | 964 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 416, 448 |
| BbsI | GAAGAC | 1 cut(s) | 857 |
| Bbv12I | GWGCWC | 2 cut(s) | 751, 964 |
| BbvI | GCAGC | 3 cut(s) | 141, 720, 934 |
| BccI | CCATC | 3 cut(s) | 376, 847, 1013 |
| BceAI | ACGGC | 1 cut(s) | 729 |
| BciT130I | CCWGG | 1 cut(s) | 955 |
| BclI | TGATCA | 2 cut(s) | 133, 550 |
| BcoDI | GTCTC | 1 cut(s) | 365 |
| BcuI | ACTAGT | 1 cut(s) | 979 |
| BfaI | CTAG | 3 cut(s) | 428, 980, 1039 |
| BfmI | CTRYAG | 1 cut(s) | 155 |
| BisI | GCNGC | 3 cut(s) | 155, 734, 923 |
| BlsI | GCNGC | 3 cut(s) | 156, 735, 924 |
| Bme1390I | CCNGG | 1 cut(s) | 955 |
| Bme18I | GGWCC | 1 cut(s) | 1001 |
| BmgT120I | GGNCC | 1 cut(s) | 1001 |
| BmiI | GGNNCC | 3 cut(s) | 405, 425, 1003 |
| BmrFI | CCNGG | 1 cut(s) | 955 |
| BmsI | GCATC | 3 cut(s) | 9, 30, 934 |
| BpiI | GAAGAC | 1 cut(s) | 857 |
| BpmI | CTGGAG | 1 cut(s) | 976 |
| Bpu14I | TTCGAA | 1 cut(s) | 532 |
| BsaJI | CCNNGG | 2 cut(s) | 28, 243 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 225, 686, 1011 |
| Bse1I | ACTGG | 1 cut(s) | 865 |
| Bse3DI | GCAATG | 1 cut(s) | 386 |
| BseBI | CCWGG | 1 cut(s) | 955 |
| BseDI | CCNNGG | 2 cut(s) | 28, 243 |
| BseGI | GGATG | 3 cut(s) | 24, 154, 466 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 225, 686, 1011 |
| BseMI | GCAATG | 1 cut(s) | 386 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseNI | ACTGG | 1 cut(s) | 865 |
| BseRI | GAGGAG | 2 cut(s) | 221, 416 |
| BseXI | GCAGC | 3 cut(s) | 141, 720, 934 |
| BshFI | GGCC | 1 cut(s) | 716 |
| BshNI | GGYRCC | 1 cut(s) | 423 |
| BsiHKAI | GWGCWC | 2 cut(s) | 751, 964 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 225, 686, 1011 |
| BsmAI | GTCTC | 1 cut(s) | 365 |
| BsmI | GAATGC | 1 cut(s) | 257 |
| BsnI | GGCC | 1 cut(s) | 716 |
| Bsp119I | TTCGAA | 1 cut(s) | 532 |
| Bsp1286I | GDGCHC | 2 cut(s) | 751, 964 |
| Bsp143I | GATC | 3 cut(s) | 133, 550, 676 |
| Bsp19I | CCATGG | 1 cut(s) | 28 |
| BspACI | CCGC | 1 cut(s) | 731 |
| BspANI | GGCC | 1 cut(s) | 716 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 964 |
| BspLI | GGNNCC | 3 cut(s) | 405, 425, 1003 |
| BspMAI | CTGCAG | 1 cut(s) | 159 |
| BspPI | GGATC | 1 cut(s) | 671 |
| BspT104I | TTCGAA | 1 cut(s) | 532 |
| BspT107I | GGYRCC | 1 cut(s) | 423 |
| BsrDI | GCAATG | 1 cut(s) | 386 |
| BsrI | ACTGG | 1 cut(s) | 865 |
| BssECI | CCNNGG | 2 cut(s) | 28, 243 |
| BssMI | GATC | 3 cut(s) | 133, 550, 676 |
| BssT1I | CCWWGG | 2 cut(s) | 28, 243 |
| Bst2UI | CCWGG | 1 cut(s) | 955 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 478, 505 |
| Bst6I | CTCTTC | 3 cut(s) | 354, 363, 590 |
| BstBI | TTCGAA | 1 cut(s) | 532 |
| BstC8I | GCNNGC | 2 cut(s) | 213, 920 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstDSI | CCRYGG | 1 cut(s) | 28 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 684 |
| BstF5I | GGATG | 3 cut(s) | 24, 154, 466 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 3 cut(s) | 136, 553, 679 |
| BstMAI | GTCTC | 1 cut(s) | 365 |
| BstMBI | GATC | 3 cut(s) | 133, 550, 676 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 730, 959 |
| BstNI | CCWGG | 1 cut(s) | 955 |
| BstNSI | RCATGY | 3 cut(s) | 50, 395, 724 |
| BstSCI | CCNGG | 1 cut(s) | 953 |
| BstSFI | CTRYAG | 1 cut(s) | 155 |
| BstV1I | GCAGC | 3 cut(s) | 141, 720, 934 |
| BstV2I | GAAGAC | 1 cut(s) | 857 |
| BsuRI | GGCC | 1 cut(s) | 716 |
| BtgI | CCRYGG | 1 cut(s) | 28 |
| BtsCI | GGATG | 3 cut(s) | 24, 154, 466 |
| BtsIMutI | CAGTG | 4 cut(s) | 12, 129, 150, 474 |
| Cac8I | GCNNGC | 2 cut(s) | 213, 920 |
| CciI | TCATGA | 1 cut(s) | 964 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr13I | GGNCC | 1 cut(s) | 1001 |
| Csp6I | GTAC | 2 cut(s) | 173, 424 |
| CviQI | GTAC | 2 cut(s) | 173, 424 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DpnI | GATC | 3 cut(s) | 135, 552, 678 |
| DpnII | GATC | 3 cut(s) | 133, 550, 676 |
| EaeI | YGGCCR | 1 cut(s) | 714 |
| Eam1104I | CTCTTC | 3 cut(s) | 354, 363, 590 |
| EarI | CTCTTC | 3 cut(s) | 354, 363, 590 |
| Ecl136II | GAGCTC | 1 cut(s) | 962 |
| Eco130I | CCWWGG | 2 cut(s) | 28, 243 |
| Eco24I | GRGCYC | 1 cut(s) | 964 |
| Eco47I | GGWCC | 1 cut(s) | 1001 |
| Eco53kI | GAGCTC | 1 cut(s) | 962 |
| Eco57I | CTGAAG | 2 cut(s) | 241, 429 |
| EcoICRI | GAGCTC | 1 cut(s) | 962 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 684 |
| EcoRI | GAATTC | 1 cut(s) | 160 |
| EcoRII | CCWGG | 1 cut(s) | 953 |
| EcoT14I | CCWWGG | 2 cut(s) | 28, 243 |
| EcoT38I | GRGCYC | 1 cut(s) | 964 |
| ErhI | CCWWGG | 2 cut(s) | 28, 243 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FauNDI | CATATG | 1 cut(s) | 995 |
| FbaI | TGATCA | 2 cut(s) | 133, 550 |
| FblI | GTMKAC | 1 cut(s) | 644 |
| Fnu4HI | GCNGC | 3 cut(s) | 155, 734, 923 |
| FokI | GGATG | 3 cut(s) | 31, 161, 473 |
| FriOI | GRGCYC | 1 cut(s) | 964 |
| Fsp4HI | GCNGC | 3 cut(s) | 155, 734, 923 |
| FspBI | CTAG | 3 cut(s) | 428, 980, 1039 |
| GlaI | GCGC | 1 cut(s) | 333 |
| GluI | GCNGC | 3 cut(s) | 155, 734, 923 |
| GsuI | CTGGAG | 1 cut(s) | 976 |
| HaeIII | GGCC | 1 cut(s) | 716 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HindIII | AAGCTT | 1 cut(s) | 302 |
| HinfI | GANTC | 4 cut(s) | 119, 738, 779, 932 |
| HphI | GGTGA | 2 cut(s) | 503, 536 |
| Hpy166II | GTNNAC | 2 cut(s) | 645, 1001 |
| Hpy188I | TCNGA | 5 cut(s) | 260, 289, 381, 846, 991 |
| Hpy188III | TCNNGA | 5 cut(s) | 587, 626, 742, 929, 965 |
| Hpy8I | GTNNAC | 2 cut(s) | 645, 1001 |
| HpyAV | CCTTC | 3 cut(s) | 391, 625, 650 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 478, 505 |
| HpyCH4V | TGCA | 5 cut(s) | 43, 157, 347, 391, 832 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 730, 959 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| HspAI | GCGC | 1 cut(s) | 332 |
| KpnI | GGTACC | 1 cut(s) | 427 |
| Ksp22I | TGATCA | 2 cut(s) | 133, 550 |
| Kzo9I | GATC | 3 cut(s) | 133, 550, 676 |
| LmnI | GCTCC | 2 cut(s) | 208, 403 |
| LpnPI | CCDG | 6 cut(s) | 420, 600, 617, 846, 940, 967 |
| Lsp1109I | GCAGC | 3 cut(s) | 141, 720, 934 |
| LweI | GCATC | 3 cut(s) | 9, 30, 934 |
| MaeI | CTAG | 3 cut(s) | 428, 980, 1039 |
| MaeIII | GTNAC | 4 cut(s) | 49, 275, 599, 856 |
| MalI | GATC | 3 cut(s) | 135, 552, 678 |
| MboI | GATC | 3 cut(s) | 133, 550, 676 |
| MhlI | GDGCHC | 2 cut(s) | 751, 964 |
| MluCI | AATT | 7 cut(s) | 160, 340, 496, 534, 693, 817, 1021 |
| MlyI | GAGTC | 1 cut(s) | 941 |
| MmeI | TCCRAC | 1 cut(s) | 912 |
| MnlI | CCTC | 8 cut(s) | 199, 355, 394, 680, 690, 879, 891, 895 |
| MroXI | GAANNNNTTC | 2 cut(s) | 468, 981 |
| MseI | TTAA | 1 cut(s) | 822 |
| MslI | CAYNNNNRTG | 1 cut(s) | 790 |
| MspA1I | CMGCKG | 1 cut(s) | 733 |
| MspR9I | CCNGG | 1 cut(s) | 955 |
| Mva1269I | GAATGC | 1 cut(s) | 257 |
| MvaI | CCWGG | 1 cut(s) | 955 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 730, 959 |
| NcoI | CCATGG | 1 cut(s) | 28 |
| NdeI | CATATG | 1 cut(s) | 995 |
| NdeII | GATC | 3 cut(s) | 133, 550, 676 |
| NlaIV | GGNNCC | 3 cut(s) | 405, 425, 1003 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| NspI | RCATGY | 3 cut(s) | 50, 395, 724 |
| NspV | TTCGAA | 1 cut(s) | 532 |
| PagI | TCATGA | 1 cut(s) | 964 |
| PciI | ACATGT | 1 cut(s) | 46 |
| PctI | GAATGC | 1 cut(s) | 257 |
| PdmI | GAANNNNTTC | 2 cut(s) | 468, 981 |
| PfeI | GAWTC | 3 cut(s) | 119, 738, 779 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1011 |
| PkrI | GCNGC | 3 cut(s) | 156, 735, 924 |
| PleI | GAGTC | 1 cut(s) | 940 |
| PpsI | GAGTC | 1 cut(s) | 940 |
| PscI | ACATGT | 1 cut(s) | 46 |
| Psp124BI | GAGCTC | 1 cut(s) | 964 |
| Psp6I | CCWGG | 1 cut(s) | 953 |
| PspGI | CCWGG | 1 cut(s) | 953 |
| PspN4I | GGNNCC | 3 cut(s) | 405, 425, 1003 |
| PspPI | GGNCC | 1 cut(s) | 1001 |
| PstI | CTGCAG | 1 cut(s) | 159 |
| RsaI | GTAC | 2 cut(s) | 174, 425 |
| RsaNI | GTAC | 2 cut(s) | 173, 424 |
| RseI | CAYNNNNRTG | 1 cut(s) | 790 |
| SacI | GAGCTC | 1 cut(s) | 964 |
| SaqAI | TTAA | 1 cut(s) | 822 |
| SatI | GCNGC | 3 cut(s) | 155, 734, 923 |
| Sau3AI | GATC | 3 cut(s) | 133, 550, 676 |
| Sau96I | GGNCC | 1 cut(s) | 1001 |
| SchI | GAGTC | 1 cut(s) | 941 |
| ScrFI | CCNGG | 1 cut(s) | 955 |
| SduI | GDGCHC | 2 cut(s) | 751, 964 |
| SfaNI | GCATC | 3 cut(s) | 9, 30, 934 |
| SfcI | CTRYAG | 1 cut(s) | 155 |
| SfuI | TTCGAA | 1 cut(s) | 532 |
| SinI | GGWCC | 1 cut(s) | 1001 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 790 |
| SpeI | ACTAGT | 1 cut(s) | 979 |
| Sse9I | AATT | 7 cut(s) | 160, 340, 496, 534, 693, 817, 1021 |
| SsiI | CCGC | 1 cut(s) | 731 |
| SspMI | CTAG | 3 cut(s) | 428, 980, 1039 |
| SstI | GAGCTC | 1 cut(s) | 964 |
| StyD4I | CCNGG | 1 cut(s) | 953 |
| StyI | CCWWGG | 2 cut(s) | 28, 243 |
| TaaI | ACNGT | 3 cut(s) | 55, 478, 505 |
| TaqI | TCGA | 2 cut(s) | 193, 532 |
| TaqII | GACCGA | 1 cut(s) | 782 |
| TasI | AATT | 7 cut(s) | 160, 340, 496, 534, 693, 817, 1021 |
| TfiI | GAWTC | 3 cut(s) | 119, 738, 779 |
| Tru1I | TTAA | 1 cut(s) | 822 |
| Tru9I | TTAA | 1 cut(s) | 822 |
| TscAI | CASTG | 4 cut(s) | 12, 136, 150, 481 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 3 cut(s) | 154, 733, 922 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 5 cut(s) | 153, 477, 744, 974, 981 |
| TspRI | CASTG | 4 cut(s) | 12, 136, 150, 481 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1011 |
| VpaK11BI | GGWCC | 1 cut(s) | 1001 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 684 |
| XapI | RAATTY | 2 cut(s) | 160, 817 |
| XceI | RCATGY | 3 cut(s) | 50, 395, 724 |
| XmiI | GTMKAC | 1 cut(s) | 644 |
| XmnI | GAANNNNTTC | 2 cut(s) | 468, 981 |
| XspI | CTAG | 3 cut(s) | 428, 980, 1039 |