gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 26 - 204 | 3.9e-27 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 304 - 383 | 4.4e-30 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 422 - 478 | 4.4e-15 | GAG-pre-integrase domain |
| rve | PF00665 | 495 - 593 | 1.2e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 667 - 728 | 4e-28 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 841 - 1085 | 5.7e-85 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3480 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 143, 651 |
| AccI | GTMKAC | 1 cut(s) | 1590 |
| AccIII | TCCGGA | 1 cut(s) | 2020 |
| AciI | CCGC | 6 cut(s) | 91, 945, 1851, 2204, 2716, 3530 |
| AclWI | GGATC | 5 cut(s) | 28, 486, 2435, 3233, 3420 |
| AcoI | YGGCCR | 3 cut(s) | 3, 778, 2750 |
| AcuI | CTGAAG | 3 cut(s) | 209, 1862, 3660 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 143, 379, 651, 1196, 1457, 2020, 3067 |
| AhlI | ACTAGT | 1 cut(s) | 3047 |
| AjnI | CCWGG | 4 cut(s) | 618, 684, 1952, 2827 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1245, 1277 |
| AleI | CACNNNNGTG | 1 cut(s) | 323 |
| Alw21I | GWGCWC | 3 cut(s) | 1905, 2338, 2973 |
| Alw26I | GTCTC | 6 cut(s) | 245, 1434, 1531, 2231, 2465, 2593 |
| AlwI | GGATC | 5 cut(s) | 28, 486, 2435, 3233, 3420 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 143, 340 |
| Aor13HI | TCCGGA | 1 cut(s) | 2020 |
| AoxI | GGCC | 5 cut(s) | 3, 778, 1871, 2354, 2750 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3266, 3298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 418 |
| AspLEI | GCGC | 2 cut(s) | 2692, 3444 |
| AspS9I | GGNCC | 4 cut(s) | 315, 484, 1511, 2305 |
| AsuHPI | GGTGA | 7 cut(s) | 1712, 1767, 2268, 2399, 2621, 3307, 3545 |
| AvaII | GGWCC | 4 cut(s) | 315, 484, 1511, 2305 |
| AxyI | CCTNAGG | 2 cut(s) | 1875, 1944 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2905, 2938 |
| BalI | TGGCCA | 2 cut(s) | 5, 780 |
| BanII | GRGCYC | 1 cut(s) | 2338 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 599, 631, 767, 799 |
| BauI | CACGAG | 1 cut(s) | 3595 |
| BbsI | GAAGAC | 2 cut(s) | 1370, 1850 |
| Bbv12I | GWGCWC | 3 cut(s) | 1905, 2338, 2973 |
| BceAI | ACGGC | 2 cut(s) | 2124, 2904 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 332, 366, 3645, 3679 |
| BciT130I | CCWGG | 4 cut(s) | 620, 686, 1954, 2829 |
| BciVI | GTATCC | 3 cut(s) | 652, 1139, 3429 |
| BclI | TGATCA | 1 cut(s) | 1978 |
| BcoDI | GTCTC | 6 cut(s) | 245, 1434, 1531, 2231, 2465, 2593 |
| BcuI | ACTAGT | 1 cut(s) | 3047 |
| BfaI | CTAG | 6 cut(s) | 1401, 1646, 1848, 3048, 3206, 3419 |
| BfmI | CTRYAG | 2 cut(s) | 1484, 3152 |
| BfuI | GTATCC | 3 cut(s) | 652, 1139, 3429 |
| BglII | AGATCT | 1 cut(s) | 199 |
| BmcAI | AGTACT | 2 cut(s) | 104, 956 |
| Bme1390I | CCNGG | 4 cut(s) | 620, 686, 1954, 2829 |
| Bme18I | GGWCC | 4 cut(s) | 315, 484, 1511, 2305 |
| BmgT120I | GGNCC | 4 cut(s) | 315, 484, 1511, 2305 |
| BmiI | GGNNCC | 2 cut(s) | 683, 1513 |
| BmrFI | CCNGG | 4 cut(s) | 620, 686, 1954, 2829 |
| BpiI | GAAGAC | 2 cut(s) | 1370, 1850 |
| BpmI | CTGGAG | 4 cut(s) | 165, 641, 1975, 3218 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1209, 2466 |
| BpuEI | CTTGAG | 4 cut(s) | 188, 479, 1363, 1696 |
| Bsa29I | ATCGAT | 1 cut(s) | 763 |
| BsaBI | GATNNNNATC | 2 cut(s) | 240, 3173 |
| BsaI | GGTCTC | 2 cut(s) | 245, 1434 |
| BsaJI | CCNNGG | 3 cut(s) | 685, 2827, 2903 |
| BsaWI | WCCGGW | 1 cut(s) | 2020 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 143, 379, 651, 1196, 1457, 2020, 3067 |
| Bse118I | RCCGGY | 2 cut(s) | 1969, 2752 |
| Bse1I | ACTGG | 5 cut(s) | 110, 1523, 2312, 2693, 3201 |
| Bse21I | CCTNAGG | 2 cut(s) | 1875, 1944 |
| Bse8I | GATNNNNATC | 2 cut(s) | 240, 3173 |
| BseAI | TCCGGA | 1 cut(s) | 2020 |
| BseBI | CCWGG | 4 cut(s) | 620, 686, 1954, 2829 |
| BseCI | ATCGAT | 1 cut(s) | 763 |
| BseDI | CCNNGG | 3 cut(s) | 685, 2827, 2903 |
| BseJI | GATNNNNATC | 2 cut(s) | 240, 3173 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 143, 379, 651, 1196, 1457, 2020, 3067 |
| BseMII | CTCAG | 7 cut(s) | 1223, 1602, 1866, 1935, 2588, 2753, 3636 |
| BseNI | ACTGG | 5 cut(s) | 110, 1523, 2312, 2693, 3201 |
| BseRI | GAGGAG | 8 cut(s) | 197, 548, 638, 723, 744, 837, 2174, 3110 |
| BseYI | CCCAGC | 1 cut(s) | 3164 |
| BsgI | GTGCAG | 1 cut(s) | 44 |
| BshFI | GGCC | 5 cut(s) | 5, 780, 1873, 2356, 2752 |
| BshVI | ATCGAT | 1 cut(s) | 763 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1905, 2338, 2973 |
| BsiSI | CCGG | 3 cut(s) | 1970, 2021, 2753 |
| BslFI | GGGAC | 3 cut(s) | 907, 1079, 1497 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 143, 379, 651, 1196, 1457, 2020, 3067 |
| BsmAI | GTCTC | 6 cut(s) | 245, 1434, 1531, 2231, 2465, 2593 |
| BsmFI | GGGAC | 3 cut(s) | 907, 1079, 1497 |
| BsmI | GAATGC | 5 cut(s) | 761, 800, 1718, 1746, 3304 |
| BsnI | GGCC | 5 cut(s) | 5, 780, 1873, 2356, 2752 |
| Bso31I | GGTCTC | 2 cut(s) | 245, 1434 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1905, 2338, 2973 |
| Bsp13I | TCCGGA | 1 cut(s) | 2020 |
| Bsp1407I | TGTACA | 1 cut(s) | 2811 |
| BspACI | CCGC | 6 cut(s) | 91, 945, 1851, 2204, 2716, 3530 |
| BspANI | GGCC | 5 cut(s) | 5, 780, 1873, 2356, 2752 |
| BspCNI | CTCAG | 7 cut(s) | 1222, 1603, 1867, 1936, 2589, 2752, 3637 |
| BspDI | ATCGAT | 1 cut(s) | 763 |
| BspEI | TCCGGA | 1 cut(s) | 2020 |
| BspHI | TCATGA | 3 cut(s) | 886, 1722, 2245 |
| BspLI | GGNNCC | 2 cut(s) | 683, 1513 |
| BspMAI | CTGCAG | 1 cut(s) | 1488 |
| BspPI | GGATC | 5 cut(s) | 28, 486, 2435, 3233, 3420 |
| BspQI | GCTCTTC | 3 cut(s) | 354, 602, 1100 |
| BspTNI | GGTCTC | 2 cut(s) | 245, 1434 |
| BsrFI | RCCGGY | 2 cut(s) | 1969, 2752 |
| BsrGI | TGTACA | 1 cut(s) | 2811 |
| BsrI | ACTGG | 5 cut(s) | 110, 1523, 2312, 2693, 3201 |
| BssAI | RCCGGY | 2 cut(s) | 1969, 2752 |
| BssECI | CCNNGG | 3 cut(s) | 685, 2827, 2903 |
| BssNAI | GTATAC | 1 cut(s) | 1591 |
| BssSI | CACGAG | 1 cut(s) | 3595 |
| BssT1I | CCWWGG | 1 cut(s) | 2903 |
| Bst1107I | GTATAC | 1 cut(s) | 1591 |
| Bst2BI | CACGAG | 1 cut(s) | 3595 |
| Bst2UI | CCWGG | 4 cut(s) | 620, 686, 1954, 2829 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 340 |
| BstAUI | TGTACA | 1 cut(s) | 2811 |
| BstC8I | GCNNGC | 7 cut(s) | 345, 630, 1754, 1838, 2358, 2898, 3804 |
| BstEII | GGTNACC | 2 cut(s) | 1213, 2387 |
| BstHHI | GCGC | 2 cut(s) | 2692, 3444 |
| BstMAI | GTCTC | 6 cut(s) | 245, 1434, 1531, 2231, 2465, 2593 |
| BstNI | CCWGG | 4 cut(s) | 620, 686, 1954, 2829 |
| BstNSI | RCATGY | 1 cut(s) | 1840 |
| BstPI | GGTNACC | 2 cut(s) | 1213, 2387 |
| BstSCI | CCNGG | 4 cut(s) | 618, 684, 1952, 2827 |
| BstSFI | CTRYAG | 2 cut(s) | 1484, 3152 |
| BstV2I | GAAGAC | 2 cut(s) | 1370, 1850 |
| BstX2I | RGATCY | 2 cut(s) | 199, 3225 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2910 |
| BstYI | RGATCY | 2 cut(s) | 199, 3225 |
| BstZ17I | GTATAC | 1 cut(s) | 1591 |
| Bsu15I | ATCGAT | 1 cut(s) | 763 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1875, 1944 |
| BsuI | GTATCC | 3 cut(s) | 652, 1139, 3429 |
| BsuRI | GGCC | 5 cut(s) | 5, 780, 1873, 2356, 2752 |
| BsuTUI | ATCGAT | 1 cut(s) | 763 |
| BtsI | GCAGTG | 3 cut(s) | 477, 1349, 3432 |
| BtsIMutI | CAGTG | 7 cut(s) | 477, 1349, 2239, 2319, 2718, 3194, 3432 |
| Cac8I | GCNNGC | 7 cut(s) | 345, 630, 1754, 1838, 2358, 2898, 3804 |
| CaiI | CAGNNNCTG | 2 cut(s) | 143, 340 |
| CciI | TCATGA | 3 cut(s) | 886, 1722, 2245 |
| CfoI | GCGC | 2 cut(s) | 2692, 3444 |
| Cfr10I | RCCGGY | 2 cut(s) | 1969, 2752 |
| Cfr13I | GGNCC | 4 cut(s) | 315, 484, 1511, 2305 |
| ClaI | ATCGAT | 1 cut(s) | 763 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3237, 3272 |
| DraI | TTTAAA | 1 cut(s) | 1630 |
| EaeI | YGGCCR | 3 cut(s) | 3, 778, 2750 |
| Ecl136II | GAGCTC | 1 cut(s) | 2336 |
| Eco130I | CCWWGG | 1 cut(s) | 2903 |
| Eco147I | AGGCCT | 1 cut(s) | 2356 |
| Eco24I | GRGCYC | 1 cut(s) | 2338 |
| Eco31I | GGTCTC | 2 cut(s) | 245, 1434 |
| Eco47I | GGWCC | 4 cut(s) | 315, 484, 1511, 2305 |
| Eco53kI | GAGCTC | 1 cut(s) | 2336 |
| Eco57I | CTGAAG | 3 cut(s) | 209, 1862, 3660 |
| Eco81I | CCTNAGG | 2 cut(s) | 1875, 1944 |
| Eco91I | GGTNACC | 2 cut(s) | 1213, 2387 |
| EcoICRI | GAGCTC | 1 cut(s) | 2336 |
| EcoO109I | RGGNCCY | 1 cut(s) | 484 |
| EcoO65I | GGTNACC | 2 cut(s) | 1213, 2387 |
| EcoRI | GAATTC | 3 cut(s) | 977, 2506, 2743 |
| EcoRII | CCWGG | 4 cut(s) | 618, 684, 1952, 2827 |
| EcoT14I | CCWWGG | 1 cut(s) | 2903 |
| EcoT22I | ATGCAT | 2 cut(s) | 1188, 1297 |
| EcoT38I | GRGCYC | 1 cut(s) | 2338 |
| ErhI | CCWWGG | 1 cut(s) | 2903 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2051, 2083, 2831, 2863 |
| FaqI | GGGAC | 3 cut(s) | 907, 1079, 1497 |
| FauI | CCCGC | 2 cut(s) | 1844, 3523 |
| FauNDI | CATATG | 3 cut(s) | 939, 1311, 1505 |
| FbaI | TGATCA | 1 cut(s) | 1978 |
| FblI | GTMKAC | 1 cut(s) | 1590 |
| FriOI | GRGCYC | 1 cut(s) | 2338 |
| FspBI | CTAG | 6 cut(s) | 1401, 1646, 1848, 3048, 3206, 3419 |
| GlaI | GCGC | 2 cut(s) | 2691, 3443 |
| GsaI | CCCAGC | 1 cut(s) | 3168 |
| GsuI | CTGGAG | 4 cut(s) | 165, 641, 1975, 3218 |
| HaeIII | GGCC | 5 cut(s) | 5, 780, 1873, 2356, 2752 |
| HapII | CCGG | 3 cut(s) | 1970, 2021, 2753 |
| HhaI | GCGC | 2 cut(s) | 2692, 3444 |
| Hin6I | GCGC | 2 cut(s) | 2690, 3442 |
| HinP1I | GCGC | 2 cut(s) | 2690, 3442 |
| HincII | GTYRAC | 4 cut(s) | 2230, 2558, 2617, 3633 |
| HindII | GTYRAC | 4 cut(s) | 2230, 2558, 2617, 3633 |
| HindIII | AAGCTT | 5 cut(s) | 455, 998, 2094, 2702, 3266 |
| HpaII | CCGG | 3 cut(s) | 1970, 2021, 2753 |
| HphI | GGTGA | 7 cut(s) | 1712, 1767, 2268, 2399, 2621, 3307, 3545 |
| HpyCH4IV | ACGT | 3 cut(s) | 1092, 2341, 3557 |
| HpySE526I | ACGT | 3 cut(s) | 1092, 2341, 3557 |
| HspAI | GCGC | 2 cut(s) | 2690, 3442 |
| Kpn2I | TCCGGA | 1 cut(s) | 2020 |
| Ksp22I | TGATCA | 1 cut(s) | 1978 |
| LguI | GCTCTTC | 3 cut(s) | 354, 602, 1100 |
| LmnI | GCTCC | 5 cut(s) | 184, 625, 1460, 1600, 3587 |
| MaeI | CTAG | 6 cut(s) | 1401, 1646, 1848, 3048, 3206, 3419 |
| MaeII | ACGT | 3 cut(s) | 1092, 2341, 3557 |
| MfeI | CAATTG | 5 cut(s) | 231, 528, 2409, 2511, 3249 |
| MflI | RGATCY | 2 cut(s) | 199, 3225 |
| MhlI | GDGCHC | 3 cut(s) | 1905, 2338, 2973 |
| MlsI | TGGCCA | 2 cut(s) | 5, 780 |
| MluNI | TGGCCA | 2 cut(s) | 5, 780 |
| MlyI | GAGTC | 6 cut(s) | 545, 914, 1636, 1667, 2326, 3736 |
| MmeI | TCCRAC | 5 cut(s) | 159, 1276, 3048, 3304, 3755 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 780 |
| Mph1103I | ATGCAT | 2 cut(s) | 1188, 1297 |
| MroI | TCCGGA | 1 cut(s) | 2020 |
| MroXI | GAANNNNTTC | 1 cut(s) | 418 |
| MscI | TGGCCA | 2 cut(s) | 5, 780 |
| MslI | CAYNNNNRTG | 4 cut(s) | 323, 774, 1303, 2570 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 780 |
| MspA1I | CMGCKG | 4 cut(s) | 143, 340, 3164, 3659 |
| MspI | CCGG | 3 cut(s) | 1970, 2021, 2753 |
| MspR9I | CCNGG | 4 cut(s) | 620, 686, 1954, 2829 |
| MunI | CAATTG | 5 cut(s) | 231, 528, 2409, 2511, 3249 |
| Mva1269I | GAATGC | 5 cut(s) | 761, 800, 1718, 1746, 3304 |
| MvaI | CCWGG | 4 cut(s) | 620, 686, 1954, 2829 |
| NdeI | CATATG | 3 cut(s) | 939, 1311, 1505 |
| NlaIV | GGNNCC | 2 cut(s) | 683, 1513 |
| NmuCI | GTSAC | 4 cut(s) | 1369, 2387, 3622, 3746 |
| NsiI | ATGCAT | 2 cut(s) | 1188, 1297 |
| NspI | RCATGY | 1 cut(s) | 1840 |
| OliI | CACNNNNGTG | 1 cut(s) | 323 |
| PaeI | GCATGC | 1 cut(s) | 1840 |
| PagI | TCATGA | 3 cut(s) | 886, 1722, 2245 |
| PceI | AGGCCT | 1 cut(s) | 2356 |
| PciSI | GCTCTTC | 3 cut(s) | 354, 602, 1100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1690 |
| PctI | GAATGC | 5 cut(s) | 761, 800, 1718, 1746, 3304 |
| PdmI | GAANNNNTTC | 1 cut(s) | 418 |
| PfeI | GAWTC | 7 cut(s) | 11, 389, 1678, 1807, 1855, 2087, 3213 |
| PflFI | GACNNNGTC | 1 cut(s) | 3628 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 143, 651 |
| PleI | GAGTC | 6 cut(s) | 544, 914, 1636, 1666, 2325, 3735 |
| PpsI | GAGTC | 6 cut(s) | 544, 914, 1636, 1666, 2325, 3735 |
| PpuMI | RGGWCCY | 1 cut(s) | 484 |
| PsiI | TTATAA | 1 cut(s) | 3480 |
| Psp124BI | GAGCTC | 1 cut(s) | 2338 |
| Psp5II | RGGWCCY | 1 cut(s) | 484 |
| Psp6I | CCWGG | 4 cut(s) | 618, 684, 1952, 2827 |
| PspEI | GGTNACC | 2 cut(s) | 1213, 2387 |
| PspFI | CCCAGC | 1 cut(s) | 3164 |
| PspGI | CCWGG | 4 cut(s) | 618, 684, 1952, 2827 |
| PspN4I | GGNNCC | 2 cut(s) | 683, 1513 |
| PspPI | GGNCC | 4 cut(s) | 315, 484, 1511, 2305 |
| PspPPI | RGGWCCY | 1 cut(s) | 484 |
| PstI | CTGCAG | 1 cut(s) | 1488 |
| PstNI | CAGNNNCTG | 2 cut(s) | 143, 340 |
| PsuI | RGATCY | 2 cut(s) | 199, 3225 |
| PsyI | GACNNNGTC | 1 cut(s) | 3628 |
| PvuII | CAGCTG | 4 cut(s) | 143, 340, 3164, 3659 |
| RseI | CAYNNNNRTG | 4 cut(s) | 323, 774, 1303, 2570 |
| SacI | GAGCTC | 1 cut(s) | 2338 |
| SapI | GCTCTTC | 3 cut(s) | 354, 602, 1100 |
| Sau96I | GGNCC | 4 cut(s) | 315, 484, 1511, 2305 |
| ScaI | AGTACT | 2 cut(s) | 104, 956 |
| SchI | GAGTC | 6 cut(s) | 545, 914, 1636, 1667, 2326, 3736 |
| ScrFI | CCNGG | 4 cut(s) | 620, 686, 1954, 2829 |
| SduI | GDGCHC | 3 cut(s) | 1905, 2338, 2973 |
| SfcI | CTRYAG | 2 cut(s) | 1484, 3152 |
| SinI | GGWCC | 4 cut(s) | 315, 484, 1511, 2305 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 323, 774, 1303, 2570 |
| SmlI | CTYRAG | 4 cut(s) | 203, 458, 1342, 1711 |
| SmoI | CTYRAG | 4 cut(s) | 203, 458, 1342, 1711 |
| SpeI | ACTAGT | 1 cut(s) | 3047 |
| SphI | GCATGC | 1 cut(s) | 1840 |
| SseBI | AGGCCT | 1 cut(s) | 2356 |
| SsiI | CCGC | 6 cut(s) | 91, 945, 1851, 2204, 2716, 3530 |
| SspI | AATATT | 1 cut(s) | 404 |
| SspMI | CTAG | 6 cut(s) | 1401, 1646, 1848, 3048, 3206, 3419 |
| SstI | GAGCTC | 1 cut(s) | 2338 |
| StuI | AGGCCT | 1 cut(s) | 2356 |
| StyD4I | CCNGG | 4 cut(s) | 618, 684, 1952, 2827 |
| StyI | CCWWGG | 1 cut(s) | 2903 |
| TaiI | ACGT | 3 cut(s) | 1095, 2344, 3560 |
| TatI | WGTACW | 3 cut(s) | 102, 954, 2811 |
| TfiI | GAWTC | 7 cut(s) | 11, 389, 1678, 1807, 1855, 2087, 3213 |
| TscAI | CASTG | 7 cut(s) | 477, 1356, 2239, 2319, 2718, 3201, 3432 |
| TseFI | GTSAC | 4 cut(s) | 1369, 2387, 3622, 3746 |
| Tsp45I | GTSAC | 4 cut(s) | 1369, 2387, 3622, 3746 |
| TspGWI | ACGGA | 3 cut(s) | 119, 2805, 3530 |
| TspRI | CASTG | 7 cut(s) | 477, 1356, 2239, 2319, 2718, 3201, 3432 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3628 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 143, 651 |
| VpaK11BI | GGWCC | 4 cut(s) | 315, 484, 1511, 2305 |
| XbaI | TCTAGA | 1 cut(s) | 3205 |
| XceI | RCATGY | 1 cut(s) | 1840 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1866 |
| XmiI | GTMKAC | 1 cut(s) | 1590 |
| XmnI | GAANNNNTTC | 1 cut(s) | 418 |
| XspI | CTAG | 6 cut(s) | 1401, 1646, 1848, 3048, 3206, 3419 |
| ZrmI | AGTACT | 2 cut(s) | 104, 956 |
| Zsp2I | ATGCAT | 2 cut(s) | 1188, 1297 |