Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 111 | 3.6e-29 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 113, 246, 265 |
| AfaI | GTAC | 4 cut(s) | 41, 63, 98, 206 |
| AflIII | ACRYGT | 1 cut(s) | 42 |
| AgsI | TTSAA | 3 cut(s) | 20, 245, 283 |
| AleI | CACNNNNGTG | 1 cut(s) | 315 |
| AluBI | AGCT | 4 cut(s) | 29, 159, 173, 191 |
| AluI | AGCT | 4 cut(s) | 29, 159, 173, 191 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 3 cut(s) | 113, 246, 265 |
| AspLEI | GCGC | 1 cut(s) | 145 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BclI | TGATCA | 1 cut(s) | 331 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| BmcAI | AGTACT | 1 cut(s) | 63 |
| BpuEI | CTTGAG | 1 cut(s) | 290 |
| BsaAI | YACGTR | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 1 cut(s) | 86 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 254, 284 |
| BseDI | CCNNGG | 1 cut(s) | 86 |
| BseGI | GGATG | 2 cut(s) | 31, 217 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| Bsp1407I | TGTACA | 1 cut(s) | 204 |
| Bsp143I | GATC | 1 cut(s) | 331 |
| BspCNI | CTCAG | 1 cut(s) | 149 |
| BsrGI | TGTACA | 1 cut(s) | 204 |
| BssECI | CCNNGG | 1 cut(s) | 86 |
| BssMI | GATC | 1 cut(s) | 331 |
| BssT1I | CCWWGG | 1 cut(s) | 86 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 101 |
| BstAUI | TGTACA | 1 cut(s) | 204 |
| BstBAI | YACGTR | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 1 cut(s) | 147 |
| BstDEI | CTNAG | 1 cut(s) | 136 |
| BstF5I | GGATG | 2 cut(s) | 31, 217 |
| BstHHI | GCGC | 1 cut(s) | 145 |
| BstKTI | GATC | 1 cut(s) | 334 |
| BstMBI | GATC | 1 cut(s) | 331 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 21, 89 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 31, 217 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 1 cut(s) | 147 |
| CfoI | GCGC | 1 cut(s) | 145 |
| Csp6I | GTAC | 4 cut(s) | 40, 62, 97, 205 |
| CviAII | CATG | 2 cut(s) | 146, 208 |
| CviJI | RGCY | 6 cut(s) | 7, 15, 29, 159, 173, 191 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 15, 29, 159, 173, 191 |
| CviQI | GTAC | 4 cut(s) | 40, 62, 97, 205 |
| DdeI | CTNAG | 1 cut(s) | 136 |
| DpnI | GATC | 1 cut(s) | 333 |
| DpnII | GATC | 1 cut(s) | 331 |
| Eco130I | CCWWGG | 1 cut(s) | 86 |
| EcoT14I | CCWWGG | 1 cut(s) | 86 |
| ErhI | CCWWGG | 1 cut(s) | 86 |
| FaeI | CATG | 2 cut(s) | 149, 211 |
| FaiI | YATR | 3 cut(s) | 147, 209, 340 |
| FatI | CATG | 2 cut(s) | 145, 207 |
| FbaI | TGATCA | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 2 cut(s) | 18, 224 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 144 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HhaI | GCGC | 1 cut(s) | 145 |
| Hin1II | CATG | 2 cut(s) | 149, 211 |
| Hin6I | GCGC | 1 cut(s) | 143 |
| HinP1I | GCGC | 1 cut(s) | 143 |
| HinfI | GANTC | 1 cut(s) | 152 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 1 cut(s) | 75 |
| Hpy188III | TCNNGA | 1 cut(s) | 283 |
| Hpy8I | GTNNAC | 1 cut(s) | 205 |
| Hpy99I | CGWCG | 1 cut(s) | 255 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 101 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 48, 149 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 21, 89 |
| HpyF3I | CTNAG | 1 cut(s) | 136 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Hsp92II | CATG | 2 cut(s) | 149, 211 |
| HspAI | GCGC | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 1 cut(s) | 331 |
| Kzo9I | GATC | 1 cut(s) | 331 |
| LpnPI | CCDG | 2 cut(s) | 169, 185 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 1 cut(s) | 131 |
| MalI | GATC | 1 cut(s) | 333 |
| MboI | GATC | 1 cut(s) | 331 |
| MluCI | AATT | 3 cut(s) | 113, 246, 265 |
| MnlI | CCTC | 4 cut(s) | 48, 173, 232, 319 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 315 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 21, 89 |
| NdeII | GATC | 1 cut(s) | 331 |
| NlaIII | CATG | 2 cut(s) | 149, 211 |
| NspI | RCATGY | 1 cut(s) | 149 |
| OliI | CACNNNNGTG | 1 cut(s) | 315 |
| PaeI | GCATGC | 1 cut(s) | 149 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| Ppu21I | YACGTR | 1 cut(s) | 43 |
| RsaI | GTAC | 4 cut(s) | 41, 63, 98, 206 |
| RsaNI | GTAC | 4 cut(s) | 40, 62, 97, 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 315 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 1 cut(s) | 331 |
| ScaI | AGTACT | 1 cut(s) | 63 |
| SetI | ASST | 8 cut(s) | 31, 45, 161, 175, 193, 219, 243, 330 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 305 |
| SmoI | CTYRAG | 1 cut(s) | 305 |
| SphI | GCATGC | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 113, 246, 265 |
| StyI | CCWWGG | 1 cut(s) | 86 |
| TaaI | ACNGT | 2 cut(s) | 71, 101 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TaqI | TCGA | 1 cut(s) | 253 |
| TasI | AATT | 3 cut(s) | 113, 246, 265 |
| TatI | WGTACW | 2 cut(s) | 61, 204 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 1 cut(s) | 144 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 302 |
| TspRI | CASTG | 1 cut(s) | 144 |
| XapI | RAATTY | 3 cut(s) | 113, 246, 265 |
| XceI | RCATGY | 1 cut(s) | 149 |
| ZrmI | AGTACT | 1 cut(s) | 63 |