FvH4_1g18442

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000154
Physical Location & Seq
Forward (+)
10774129 .. 10775067
939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18442.t1

Sequence Viewer

Length: 939 bp
ATGTCGAAAATTCAAGAACTTAAGAAGAAGTTAGGAGCTGAATTCGACATGAAGGATCTAAGAGCTGCACAGAAGATCCTTGGGATTGAAATAAAGAGGGATAGAAGCGAAGGAAAAATATGGCTGTCACAAGAAAAGTACATCATGAAGGTACTTGAACGCTTCAACATGGATGGAGCCAAGTTTGTTTCTACCCCATTAGCTGCACACTTTAAGTTGAGTGCACAGCAAAGGCCATCAAATCAGAAAGAAATTGATGTGATGAAGAATGTTCCATATGCAAGTGCAGTAGGGTGTCTCATGTATGCAATGATATGCACAAGACCAGATTTAGCTCAAGCATTGAGAGTCGTCTCCAAGTATATGTCAAATCCGGGTAAACGCCATTGGGAAGCAGTAAAGTGGATTTTAAGGTACTTGAAGAGGACTAAGCAGCTTGGAATTATGTTTGAGAGAAAACAGGGAGAAGCATGTGTTGCTGGTTTTGTAGACTCTGATTTTGCAGGAGACTTAGATAAAAGGAGGTCCACAACAGGTTATGTTTTCACCTGTGGAGGAGGACCTGTGAGCTGGAAGGCGACTCTTCAAGCAGTCACAGCTCTATCTACTACAGAGGCAGAGTATATGGCATTAACAGAGGCTTCAAAGGAGGCTATTTGGTTGAATGGGCTGGCAAGTCAGTTTGGGATTCACCAAGAAGGCGTGGTAGTGAAGTGTGACAGCCAAAGTGCCATTCACTTGGCAAAGAATCAGGTGTTTCATGCAAGAACGAAGCACATTGATGTTCGCTATCACAGGATCAGAGATTGGGTAGAAGCTGGAGATATCATTGTGGAGAAGGTTCACACAAATGACAATGCAGCAGATTGTTTAACCAAGCCCGTTTCTACAGAGAAGTTCAAGCATTGCTTGGACTTGCTCAGTGTCACAGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

313

Amino Acids

35.13

Weight (kDa)

9.26

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 68 1.3e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 489
AclWI GGATC 3 cut(s) 63, 70, 806
AcsI RAATTY 2 cut(s) 9, 41
AfaI GTAC 3 cut(s) 140, 153, 416
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 9 cut(s) 14, 89, 158, 166, 421, 587, 645, 664, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AluBI AGCT 9 cut(s) 38, 65, 203, 335, 436, 570, 599, 818, 932
AluI AGCT 9 cut(s) 38, 65, 203, 335, 436, 570, 599, 818, 932
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 302, 358, 501
Alw44I GTGCAC 1 cut(s) 222
AlwI GGATC 3 cut(s) 63, 70, 806
AoxI GGCC 1 cut(s) 233
ApaLI GTGCAC 1 cut(s) 222
ApeKI GCWGC 4 cut(s) 65, 203, 433, 860
ApoI RAATTY 2 cut(s) 9, 41
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspS9I GGNCC 2 cut(s) 525, 560
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 538, 683
AvaII GGWCC 2 cut(s) 525, 560
BaeGI GKGCMC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 52, 190, 445, 872
BccI CCATC 2 cut(s) 167, 244
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 3 cut(s) 302, 358, 501
BfmI CTRYAG 2 cut(s) 609, 888
BfrI CTTAAG 1 cut(s) 20
BisI GCNGC 4 cut(s) 66, 204, 434, 861
BlsI GCNGC 4 cut(s) 67, 205, 435, 862
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 2 cut(s) 525, 560
BmgT120I GGNCC 2 cut(s) 525, 560
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bse3DI GCAATG 2 cut(s) 315, 904
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 2 cut(s) 315, 904
BseMII CTCAG 1 cut(s) 934
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 4 cut(s) 52, 190, 445, 872
BsgI GTGCAG 3 cut(s) 51, 189, 306
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 374
BsmAI GTCTC 3 cut(s) 302, 358, 501
BsmBI CGTCTC 1 cut(s) 358
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 3 cut(s) 55, 75, 798
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 933
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 3 cut(s) 63, 70, 806
BspTI CTTAAG 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 315, 904
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 55, 75, 798
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 416, 588
BstAFI CTTAAG 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 672, 934
BstDEI CTNAG 4 cut(s) 59, 429, 511, 920
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 3 cut(s) 58, 78, 801
BstMAI GTCTC 3 cut(s) 302, 358, 501
BstMBI GATC 3 cut(s) 55, 75, 798
BstMWI GCNNNNNNNGC 2 cut(s) 476, 596
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 609, 888
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 52, 190, 445, 872
BstX2I RGATCY 2 cut(s) 55, 75
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 2 cut(s) 55, 75
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 928
Cac8I GCNNGC 2 cut(s) 672, 934
CciI TCATGA 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 525, 560
Csp6I GTAC 3 cut(s) 139, 152, 415
CviAII CATG 6 cut(s) 49, 145, 169, 301, 471, 761
CviQI GTAC 3 cut(s) 139, 152, 415
DdeI CTNAG 4 cut(s) 59, 429, 511, 920
DpnI GATC 3 cut(s) 57, 77, 800
DpnII GATC 3 cut(s) 55, 75, 798
Eam1104I CTCTTC 2 cut(s) 416, 588
EarI CTCTTC 2 cut(s) 416, 588
Eco130I CCWWGG 1 cut(s) 79
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 525, 560
EcoO109I RGGNCCY 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 41
EcoRV GATATC 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 6 cut(s) 52, 148, 172, 304, 474, 764
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FatI CATG 6 cut(s) 48, 144, 168, 300, 470, 760
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 4 cut(s) 66, 204, 434, 861
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 4 cut(s) 66, 204, 434, 861
GluI GCNGC 4 cut(s) 66, 204, 434, 861
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 374
Hin1II CATG 6 cut(s) 52, 148, 172, 304, 474, 764
HinfI GANTC 5 cut(s) 348, 491, 580, 688, 748
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 538, 683
Hpy166II GTNNAC 5 cut(s) 224, 380, 490, 528, 844
Hpy188I TCNGA 3 cut(s) 246, 496, 803
Hpy188III TCNNGA 2 cut(s) 14, 145
Hpy8I GTNNAC 5 cut(s) 224, 380, 490, 528, 844
HpyAV CCTTC 6 cut(s) 46, 104, 142, 568, 692, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 596
HpyF3I CTNAG 4 cut(s) 59, 429, 511, 920
Hsp92II CATG 6 cut(s) 52, 148, 172, 304, 474, 764
Kzo9I GATC 3 cut(s) 55, 75, 798
LmnI GCTCC 2 cut(s) 35, 176
Lsp1109I GCAGC 4 cut(s) 52, 190, 445, 872
MaeIII GTNAC 4 cut(s) 126, 592, 716, 925
MalI GATC 3 cut(s) 57, 77, 800
MboI GATC 3 cut(s) 55, 75, 798
MboII GAAGA 5 cut(s) 37, 85, 277, 433, 575
MflI RGATCY 2 cut(s) 55, 75
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 4 cut(s) 9, 41, 252, 441
MlyI GAGTC 3 cut(s) 357, 485, 574
MnlI CCTC 8 cut(s) 90, 417, 516, 548, 551, 607, 631, 643
MseI TTAA 5 cut(s) 21, 213, 410, 632, 872
MslI CAYNNNNRTG 2 cut(s) 780, 849
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 476, 596
NciI CCSGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 55, 75, 798
NlaIII CATG 6 cut(s) 52, 148, 172, 304, 474, 764
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 4 cut(s) 126, 592, 716, 925
NspI RCATGY 1 cut(s) 474
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 2 cut(s) 688, 748
PkrI GCNGC 4 cut(s) 67, 205, 435, 862
PleI GAGTC 3 cut(s) 356, 485, 574
PpsI GAGTC 3 cut(s) 356, 485, 574
PpuMI RGGWCCY 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 525, 560
PspPPI RGGWCCY 1 cut(s) 560
PsuI RGATCY 2 cut(s) 55, 75
RsaI GTAC 3 cut(s) 140, 153, 416
RsaNI GTAC 3 cut(s) 139, 152, 415
RseI CAYNNNNRTG 2 cut(s) 780, 849
SaqAI TTAA 5 cut(s) 21, 213, 410, 632, 872
SatI GCNGC 4 cut(s) 66, 204, 434, 861
Sau3AI GATC 3 cut(s) 55, 75, 798
Sau96I GGNCC 2 cut(s) 525, 560
SchI GAGTC 3 cut(s) 357, 485, 574
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 609, 888
SinI GGWCC 2 cut(s) 525, 560
SmiMI CAYNNNNRTG 2 cut(s) 780, 849
SmlI CTYRAG 2 cut(s) 20, 336
SmoI CTYRAG 2 cut(s) 20, 336
Sse9I AATT 4 cut(s) 9, 41, 252, 441
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 2 cut(s) 5, 45
TasI AATT 4 cut(s) 9, 41, 252, 441
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 2 cut(s) 688, 748
Tru1I TTAA 5 cut(s) 21, 213, 410, 632, 872
Tru9I TTAA 5 cut(s) 21, 213, 410, 632, 872
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 4 cut(s) 126, 592, 716, 925
TseI GCWGC 4 cut(s) 65, 203, 433, 860
Tsp45I GTSAC 4 cut(s) 126, 592, 716, 925
TspDTI ATGAA 4 cut(s) 65, 161, 278, 749
TspRI CASTG 1 cut(s) 928
Vha464I CTTAAG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 525, 560
XapI RAATTY 2 cut(s) 9, 41
XceI RCATGY 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.