Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 33 - 211 | 1.8e-30 | gag-polypeptide of LTR copia-type |
| zf-CCHC | PF00098 | 305 - 320 | 6e-06 | Zinc knuckle |
| Pol_BBD | PF22936 | 356 - 435 | 1.2e-21 | Pol polyprotein, beta-barrel domain |
| rve | PF00665 | 483 - 584 | 6.9e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 658 - 719 | 1.2e-26 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 827 - 1070 | 1.7e-82 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2832 |
| AarI | CACCTGC | 1 cut(s) | 3832 |
| Acc36I | ACCTGC | 2 cut(s) | 1175, 3832 |
| AccB1I | GGYRCC | 1 cut(s) | 2857 |
| AccI | GTMKAC | 2 cut(s) | 1074, 2999 |
| AciI | CCGC | 1 cut(s) | 1508 |
| AclI | AACGTT | 1 cut(s) | 2642 |
| AclWI | GGATC | 6 cut(s) | 37, 276, 2078, 2499, 3496, 3885 |
| AcsI | RAATTY | 5 cut(s) | 797, 1607, 1676, 1691, 2408 |
| AcuI | CTGAAG | 2 cut(s) | 3639, 3702 |
| AdeI | CACNNNGTG | 1 cut(s) | 573 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1789, 1949, 2148, 2525, 2526, 3097 |
| AflIII | ACRYGT | 1 cut(s) | 21 |
| AjnI | CCWGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| AleI | CACNNNNGTG | 1 cut(s) | 345 |
| Alw21I | GWGCWC | 2 cut(s) | 959, 1900 |
| Alw26I | GTCTC | 5 cut(s) | 268, 493, 575, 1999, 2222 |
| Alw44I | GTGCAC | 1 cut(s) | 955 |
| AlwI | GGATC | 6 cut(s) | 37, 276, 2078, 2499, 3496, 3885 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1853 |
| AoxI | GGCC | 3 cut(s) | 1740, 2325, 3555 |
| ApaLI | GTGCAC | 1 cut(s) | 955 |
| ApeKI | GCWGC | 7 cut(s) | 2138, 2206, 2307, 2420, 2693, 3326, 3713 |
| ApoI | RAATTY | 5 cut(s) | 797, 1607, 1676, 1691, 2408 |
| AseI | ATTAAT | 1 cut(s) | 459 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 668, 3029 |
| AspS9I | GGNCC | 3 cut(s) | 1346, 1484, 3555 |
| AvaII | GGWCC | 2 cut(s) | 1346, 1484 |
| BaeGI | GKGCMC | 1 cut(s) | 959 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1185, 1218 |
| BanI | GGYRCC | 1 cut(s) | 2857 |
| BanII | GRGCYC | 2 cut(s) | 1900, 3078 |
| BbsI | GAAGAC | 3 cut(s) | 1136, 2817, 3045 |
| Bbv12I | GWGCWC | 2 cut(s) | 959, 1900 |
| BbvI | GCAGC | 7 cut(s) | 2150, 2193, 2319, 2432, 2705, 3313, 3725 |
| BccI | CCATC | 9 cut(s) | 304, 1282, 1337, 1792, 2558, 2780, 3141, 3230, 3753 |
| BceAI | ACGGC | 1 cut(s) | 458 |
| BciT130I | CCWGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| BciVI | GTATCC | 1 cut(s) | 2659 |
| BclI | TGATCA | 3 cut(s) | 349, 2332, 2796 |
| BcoDI | GTCTC | 5 cut(s) | 268, 493, 575, 1999, 2222 |
| BfmI | CTRYAG | 3 cut(s) | 585, 2652, 3588 |
| BfuAI | ACCTGC | 2 cut(s) | 1175, 3832 |
| BfuI | GTATCC | 1 cut(s) | 2659 |
| BglII | AGATCT | 2 cut(s) | 273, 1474 |
| BisI | GCNGC | 7 cut(s) | 2139, 2207, 2308, 2421, 2694, 3327, 3714 |
| BlsI | GCNGC | 7 cut(s) | 2140, 2208, 2309, 2422, 2695, 3328, 3715 |
| BmcAI | AGTACT | 2 cut(s) | 2754, 3511 |
| Bme1390I | CCNGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| Bme18I | GGWCC | 2 cut(s) | 1346, 1484 |
| BmgT120I | GGNCC | 3 cut(s) | 1346, 1484, 3555 |
| BmiI | GGNNCC | 3 cut(s) | 2400, 2859, 3077 |
| BmrFI | CCNGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| BmrI | ACTGGG | 3 cut(s) | 669, 952, 3012 |
| BmsI | GCATC | 5 cut(s) | 197, 1576, 1702, 2008, 3663 |
| BmuI | ACTGGG | 3 cut(s) | 669, 952, 3012 |
| BpiI | GAAGAC | 3 cut(s) | 1136, 2817, 3045 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2305, 2337 |
| BpmI | CTGGAG | 7 cut(s) | 39, 54, 106, 201, 2220, 3675, 3782 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3395 |
| BpuEI | CTTGAG | 3 cut(s) | 2095, 2183, 3615 |
| Bsa29I | ATCGAT | 2 cut(s) | 3813, 3880 |
| BsaJI | CCNNGG | 5 cut(s) | 118, 1253, 1617, 2142, 3091 |
| BsaWI | WCCGGW | 1 cut(s) | 65 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1432, 1462, 3477, 3507 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1789, 1949, 2148, 2525, 2526, 3097 |
| Bse1I | ACTGG | 9 cut(s) | 56, 507, 664, 947, 1467, 2667, 3007, 3210, 3692 |
| Bse3DI | GCAATG | 1 cut(s) | 3459 |
| BseBI | CCWGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| BseCI | ATCGAT | 2 cut(s) | 3813, 3880 |
| BseDI | CCNNGG | 5 cut(s) | 118, 1253, 1617, 2142, 3091 |
| BseGI | GGATG | 7 cut(s) | 202, 411, 1297, 1377, 2122, 2445, 2992 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1789, 1949, 2148, 2525, 2526, 3097 |
| BseMI | GCAATG | 1 cut(s) | 3459 |
| BseMII | CTCAG | 7 cut(s) | 696, 746, 2336, 2627, 2711, 3006, 3573 |
| BseNI | ACTGG | 9 cut(s) | 56, 507, 664, 947, 1467, 2667, 3007, 3210, 3692 |
| BseRI | GAGGAG | 2 cut(s) | 1672, 2970 |
| BseSI | GKGCMC | 1 cut(s) | 959 |
| BseXI | GCAGC | 7 cut(s) | 2150, 2193, 2319, 2432, 2705, 3313, 3725 |
| BsgI | GTGCAG | 2 cut(s) | 798, 880 |
| BshFI | GGCC | 3 cut(s) | 1742, 2327, 3557 |
| BshNI | GGYRCC | 1 cut(s) | 2857 |
| BshVI | ATCGAT | 2 cut(s) | 3813, 3880 |
| BsiHKAI | GWGCWC | 2 cut(s) | 959, 1900 |
| BsiSI | CCGG | 1 cut(s) | 66 |
| BslFI | GGGAC | 2 cut(s) | 849, 2581 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1789, 1949, 2148, 2525, 2526, 3097 |
| BsmAI | GTCTC | 5 cut(s) | 268, 493, 575, 1999, 2222 |
| BsmFI | GGGAC | 2 cut(s) | 849, 2581 |
| BsmI | GAATGC | 6 cut(s) | 262, 668, 1925, 2485, 3454, 3796 |
| BsnI | GGCC | 3 cut(s) | 1742, 2327, 3557 |
| Bsp1286I | GDGCHC | 3 cut(s) | 959, 1900, 3078 |
| Bsp1407I | TGTACA | 3 cut(s) | 1544, 1984, 2820 |
| Bsp19I | CCATGG | 1 cut(s) | 1617 |
| BspACI | CCGC | 1 cut(s) | 1508 |
| BspANI | GGCC | 3 cut(s) | 1742, 2327, 3557 |
| BspCNI | CTCAG | 7 cut(s) | 695, 745, 2335, 2626, 2710, 3007, 3572 |
| BspDI | ATCGAT | 2 cut(s) | 3813, 3880 |
| BspHI | TCATGA | 3 cut(s) | 1173, 1816, 2281 |
| BspLI | GGNNCC | 3 cut(s) | 2400, 2859, 3077 |
| BspMI | ACCTGC | 2 cut(s) | 1175, 3832 |
| BspPI | GGATC | 6 cut(s) | 37, 276, 2078, 2499, 3496, 3885 |
| BspT107I | GGYRCC | 1 cut(s) | 2857 |
| BsrDI | GCAATG | 1 cut(s) | 3459 |
| BsrGI | TGTACA | 3 cut(s) | 1544, 1984, 2820 |
| BsrI | ACTGG | 9 cut(s) | 56, 507, 664, 947, 1467, 2667, 3007, 3210, 3692 |
| BssECI | CCNNGG | 5 cut(s) | 118, 1253, 1617, 2142, 3091 |
| BssNAI | GTATAC | 1 cut(s) | 3000 |
| BssT1I | CCWWGG | 3 cut(s) | 118, 1617, 3091 |
| Bst1107I | GTATAC | 1 cut(s) | 3000 |
| Bst2UI | CCWGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| Bst6I | CTCTTC | 1 cut(s) | 2409 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 821, 989, 3719 |
| BstAUI | TGTACA | 3 cut(s) | 1544, 1984, 2820 |
| BstC8I | GCNNGC | 2 cut(s) | 1510, 3331 |
| BstDSI | CCRYGG | 1 cut(s) | 1617 |
| BstF5I | GGATG | 7 cut(s) | 202, 411, 1297, 1377, 2122, 2445, 2992 |
| BstMAI | GTCTC | 5 cut(s) | 268, 493, 575, 1999, 2222 |
| BstNI | CCWGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| BstNSI | RCATGY | 2 cut(s) | 25, 1472 |
| BstSCI | CCNGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| BstSFI | CTRYAG | 3 cut(s) | 585, 2652, 3588 |
| BstSLI | GKGCMC | 1 cut(s) | 959 |
| BstV1I | GCAGC | 7 cut(s) | 2150, 2193, 2319, 2432, 2705, 3313, 3725 |
| BstV2I | GAAGAC | 3 cut(s) | 1136, 2817, 3045 |
| BstX2I | RGATCY | 5 cut(s) | 29, 273, 1474, 2491, 3488 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2349, 2868, 3092 |
| BstYI | RGATCY | 5 cut(s) | 29, 273, 1474, 2491, 3488 |
| BstZ17I | GTATAC | 1 cut(s) | 3000 |
| Bsu15I | ATCGAT | 2 cut(s) | 3813, 3880 |
| BsuI | GTATCC | 1 cut(s) | 2659 |
| BsuRI | GGCC | 3 cut(s) | 1742, 2327, 3557 |
| BsuTUI | ATCGAT | 2 cut(s) | 3813, 3880 |
| BtgI | CCRYGG | 1 cut(s) | 1617 |
| BtsCI | GGATG | 7 cut(s) | 202, 411, 1297, 1377, 2122, 2445, 2992 |
| BtsI | GCAGTG | 2 cut(s) | 3247, 3544 |
| BveI | ACCTGC | 2 cut(s) | 1175, 3832 |
| Cac8I | GCNNGC | 2 cut(s) | 1510, 3331 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1853 |
| CciI | TCATGA | 3 cut(s) | 1173, 1816, 2281 |
| Cfr13I | GGNCC | 3 cut(s) | 1346, 1484, 3555 |
| ClaI | ATCGAT | 2 cut(s) | 3813, 3880 |
| CseI | GACGC | 1 cut(s) | 239 |
| CsiI | ACCWGGT | 1 cut(s) | 2620 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2964, 2999 |
| DraIII | CACNNNGTG | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 1 cut(s) | 2409 |
| EarI | CTCTTC | 1 cut(s) | 2409 |
| Ecl136II | GAGCTC | 1 cut(s) | 1898 |
| Eco130I | CCWWGG | 3 cut(s) | 118, 1617, 3091 |
| Eco147I | AGGCCT | 1 cut(s) | 2327 |
| Eco24I | GRGCYC | 2 cut(s) | 1900, 3078 |
| Eco47I | GGWCC | 2 cut(s) | 1346, 1484 |
| Eco53kI | GAGCTC | 1 cut(s) | 1898 |
| Eco57I | CTGAAG | 2 cut(s) | 3639, 3702 |
| EcoICRI | GAGCTC | 1 cut(s) | 1898 |
| EcoRI | GAATTC | 2 cut(s) | 1676, 1691 |
| EcoRII | CCWGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| EcoT14I | CCWWGG | 3 cut(s) | 118, 1617, 3091 |
| EcoT22I | ATGCAT | 2 cut(s) | 1591, 3526 |
| EcoT38I | GRGCYC | 2 cut(s) | 1900, 3078 |
| ErhI | CCWWGG | 3 cut(s) | 118, 1617, 3091 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 866, 898, 1797, 1829, 2919, 2951 |
| FaqI | GGGAC | 2 cut(s) | 849, 2581 |
| FauI | CCCGC | 1 cut(s) | 1501 |
| FauNDI | CATATG | 1 cut(s) | 1095 |
| FbaI | TGATCA | 3 cut(s) | 349, 2332, 2796 |
| FblI | GTMKAC | 2 cut(s) | 1074, 2999 |
| Fnu4HI | GCNGC | 7 cut(s) | 2139, 2207, 2308, 2421, 2694, 3327, 3714 |
| FokI | GGATG | 7 cut(s) | 209, 418, 1304, 1384, 2129, 2452, 2999 |
| FriOI | GRGCYC | 2 cut(s) | 1900, 3078 |
| Fsp4HI | GCNGC | 7 cut(s) | 2139, 2207, 2308, 2421, 2694, 3327, 3714 |
| GluI | GCNGC | 7 cut(s) | 2139, 2207, 2308, 2421, 2694, 3327, 3714 |
| GsuI | CTGGAG | 7 cut(s) | 39, 54, 106, 201, 2220, 3675, 3782 |
| HaeIII | GGCC | 3 cut(s) | 1742, 2327, 3557 |
| HapII | CCGG | 1 cut(s) | 66 |
| HgaI | GACGC | 1 cut(s) | 239 |
| HindIII | AAGCTT | 4 cut(s) | 2099, 2552, 2825, 2835 |
| HpaII | CCGG | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 1 cut(s) | 2642 |
| HpySE526I | ACGT | 1 cut(s) | 2642 |
| Ksp22I | TGATCA | 3 cut(s) | 349, 2332, 2796 |
| LmnI | GCTCC | 1 cut(s) | 3081 |
| Lsp1109I | GCAGC | 7 cut(s) | 2150, 2193, 2319, 2432, 2705, 3313, 3725 |
| LweI | GCATC | 5 cut(s) | 197, 1576, 1702, 2008, 3663 |
| MabI | ACCWGGT | 1 cut(s) | 2620 |
| MaeII | ACGT | 1 cut(s) | 2642 |
| MaeIII | GTNAC | 7 cut(s) | 938, 1006, 1301, 1661, 1909, 2173, 2259 |
| MfeI | CAATTG | 1 cut(s) | 3717 |
| MflI | RGATCY | 5 cut(s) | 29, 273, 1474, 2491, 3488 |
| MhlI | GDGCHC | 3 cut(s) | 959, 1900, 3078 |
| MlyI | GAGTC | 6 cut(s) | 46, 308, 428, 2314, 2671, 3682 |
| MmeI | TCCRAC | 3 cut(s) | 2687, 3259, 3854 |
| Mph1103I | ATGCAT | 2 cut(s) | 1591, 3526 |
| MroXI | GAANNNNTTC | 2 cut(s) | 668, 3029 |
| MslI | CAYNNNNRTG | 5 cut(s) | 345, 1178, 2315, 2347, 3017 |
| MspA1I | CMGCKG | 1 cut(s) | 1865 |
| MspI | CCGG | 1 cut(s) | 66 |
| MspR9I | CCNGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| MunI | CAATTG | 1 cut(s) | 3717 |
| Mva1269I | GAATGC | 6 cut(s) | 262, 668, 1925, 2485, 3454, 3796 |
| MvaI | CCWGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| NcoI | CCATGG | 1 cut(s) | 1617 |
| NdeI | CATATG | 1 cut(s) | 1095 |
| NlaIV | GGNNCC | 3 cut(s) | 2400, 2859, 3077 |
| NmeAIII | GCCGAG | 1 cut(s) | 322 |
| NmuCI | GTSAC | 4 cut(s) | 938, 1006, 1661, 2259 |
| NsiI | ATGCAT | 2 cut(s) | 1591, 3526 |
| NspI | RCATGY | 2 cut(s) | 25, 1472 |
| OliI | CACNNNNGTG | 1 cut(s) | 345 |
| PacI | TTAATTAA | 1 cut(s) | 459 |
| PagI | TCATGA | 3 cut(s) | 1173, 1816, 2281 |
| PaqCI | CACCTGC | 1 cut(s) | 3832 |
| PceI | AGGCCT | 1 cut(s) | 2327 |
| PciI | ACATGT | 1 cut(s) | 21 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 294 |
| PctI | GAATGC | 6 cut(s) | 262, 668, 1925, 2485, 3454, 3796 |
| PdmI | GAANNNNTTC | 2 cut(s) | 668, 3029 |
| PfoI | TCCNGGA | 1 cut(s) | 3798 |
| PkrI | GCNGC | 7 cut(s) | 2140, 2208, 2309, 2422, 2695, 3328, 3715 |
| PleI | GAGTC | 6 cut(s) | 46, 307, 427, 2314, 2671, 3682 |
| PpsI | GAGTC | 6 cut(s) | 46, 307, 427, 2314, 2671, 3682 |
| PscI | ACATGT | 1 cut(s) | 21 |
| PshBI | ATTAAT | 1 cut(s) | 459 |
| PsiI | TTATAA | 1 cut(s) | 2832 |
| Psp124BI | GAGCTC | 1 cut(s) | 1900 |
| Psp1406I | AACGTT | 1 cut(s) | 2642 |
| Psp6I | CCWGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| PspGI | CCWGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| PspN4I | GGNNCC | 3 cut(s) | 2400, 2859, 3077 |
| PspPI | GGNCC | 3 cut(s) | 1346, 1484, 3555 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1853 |
| PsuI | RGATCY | 5 cut(s) | 29, 273, 1474, 2491, 3488 |
| PvuII | CAGCTG | 1 cut(s) | 1865 |
| RseI | CAYNNNNRTG | 5 cut(s) | 345, 1178, 2315, 2347, 3017 |
| SacI | GAGCTC | 1 cut(s) | 1900 |
| SatI | GCNGC | 7 cut(s) | 2139, 2207, 2308, 2421, 2694, 3327, 3714 |
| Sau96I | GGNCC | 3 cut(s) | 1346, 1484, 3555 |
| ScaI | AGTACT | 2 cut(s) | 2754, 3511 |
| SchI | GAGTC | 6 cut(s) | 46, 308, 428, 2314, 2671, 3682 |
| ScrFI | CCNGG | 6 cut(s) | 1254, 1944, 2143, 2622, 2869, 3800 |
| SduI | GDGCHC | 3 cut(s) | 959, 1900, 3078 |
| SexAI | ACCWGGT | 1 cut(s) | 2620 |
| SfaNI | GCATC | 5 cut(s) | 197, 1576, 1702, 2008, 3663 |
| SfcI | CTRYAG | 3 cut(s) | 585, 2652, 3588 |
| SinI | GGWCC | 2 cut(s) | 1346, 1484 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 345, 1178, 2315, 2347, 3017 |
| SmlI | CTYRAG | 3 cut(s) | 2110, 2162, 3630 |
| SmoI | CTYRAG | 3 cut(s) | 2110, 2162, 3630 |
| SseBI | AGGCCT | 1 cut(s) | 2327 |
| SsiI | CCGC | 1 cut(s) | 1508 |
| SspI | AATATT | 1 cut(s) | 1520 |
| SstI | GAGCTC | 1 cut(s) | 1900 |
| StuI | AGGCCT | 1 cut(s) | 2327 |
| StyD4I | CCNGG | 6 cut(s) | 1252, 1942, 2141, 2620, 2867, 3798 |
| StyI | CCWWGG | 3 cut(s) | 118, 1617, 3091 |
| TaiI | ACGT | 1 cut(s) | 2645 |
| TatI | WGTACW | 9 cut(s) | 1544, 1855, 1984, 2752, 2820, 3509, 3603, 3694, 3822 |
| TseFI | GTSAC | 4 cut(s) | 938, 1006, 1661, 2259 |
| TseI | GCWGC | 7 cut(s) | 2138, 2206, 2307, 2420, 2693, 3326, 3713 |
| Tsp45I | GTSAC | 4 cut(s) | 938, 1006, 1661, 2259 |
| VneI | GTGCAC | 1 cut(s) | 955 |
| VpaK11BI | GGWCC | 2 cut(s) | 1346, 1484 |
| VspI | ATTAAT | 1 cut(s) | 459 |
| XapI | RAATTY | 5 cut(s) | 797, 1607, 1676, 1691, 2408 |
| XbaI | TCTAGA | 3 cut(s) | 577, 1456, 2359 |
| XceI | RCATGY | 2 cut(s) | 25, 1472 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1839 |
| XmiI | GTMKAC | 2 cut(s) | 1074, 2999 |
| XmnI | GAANNNNTTC | 2 cut(s) | 668, 3029 |
| ZrmI | AGTACT | 2 cut(s) | 2754, 3511 |
| Zsp2I | ATGCAT | 2 cut(s) | 1591, 3526 |