gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1544 |
| Acc65I | GGTACC | 1 cut(s) | 990 |
| AccB1I | GGYRCC | 1 cut(s) | 990 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 484 |
| AccBSI | CCGCTC | 1 cut(s) | 514 |
| AccI | GTMKAC | 3 cut(s) | 113, 1167, 1479 |
| AciI | CCGC | 2 cut(s) | 514, 1613 |
| AclWI | GGATC | 3 cut(s) | 137, 1262, 1364 |
| AcoI | YGGCCR | 2 cut(s) | 429, 1787 |
| AcsI | RAATTY | 2 cut(s) | 44, 1239 |
| AcuI | CTGAAG | 3 cut(s) | 365, 1154, 1608 |
| AcvI | CACGTG | 1 cut(s) | 1310 |
| AfaI | GTAC | 2 cut(s) | 992, 1148 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 484, 1106, 1436, 1665, 1785 |
| AflII | CTTAAG | 1 cut(s) | 1636 |
| AflIII | ACRYGT | 1 cut(s) | 271 |
| AgsI | TTSAA | 9 cut(s) | 100, 521, 641, 670, 1246, 1342, 1445, 1533, 1822 |
| AjnI | CCWGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1693, 1725 |
| Alw21I | GWGCWC | 1 cut(s) | 93 |
| Alw26I | GTCTC | 4 cut(s) | 144, 552, 932, 1389 |
| AlwI | GGATC | 3 cut(s) | 137, 1262, 1364 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1295 |
| ApeKI | GCWGC | 4 cut(s) | 1088, 1391, 1539, 1655 |
| ApoI | RAATTY | 2 cut(s) | 44, 1239 |
| AseI | ATTAAT | 1 cut(s) | 1283 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| Asp718I | GGTACC | 1 cut(s) | 990 |
| AspS9I | GGNCC | 3 cut(s) | 1427, 1487, 1559 |
| AsuHPI | GGTGA | 6 cut(s) | 136, 355, 710, 986, 1249, 1575 |
| AsuII | TTCGAA | 2 cut(s) | 193, 499 |
| AsuNHI | GCTAGC | 1 cut(s) | 1744 |
| AvaII | GGWCC | 2 cut(s) | 1427, 1487 |
| BaeGI | GKGCMC | 1 cut(s) | 1309 |
| BalI | TGGCCA | 1 cut(s) | 431 |
| BanI | GGYRCC | 1 cut(s) | 990 |
| BanII | GRGCYC | 2 cut(s) | 93, 220 |
| BauI | CACGAG | 1 cut(s) | 693 |
| BbrPI | CACGTG | 1 cut(s) | 1310 |
| Bbv12I | GWGCWC | 1 cut(s) | 93 |
| BbvI | GCAGC | 4 cut(s) | 1075, 1378, 1526, 1642 |
| BccI | CCATC | 7 cut(s) | 44, 79, 379, 943, 1268, 1371, 1403 |
| BceAI | ACGGC | 1 cut(s) | 626 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 398, 432 |
| BciT130I | CCWGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| BclI | TGATCA | 3 cut(s) | 126, 306, 1855 |
| BcoDI | GTCTC | 4 cut(s) | 144, 552, 932, 1389 |
| BfaI | CTAG | 2 cut(s) | 1335, 1745 |
| BfmI | CTRYAG | 1 cut(s) | 1006 |
| BfrI | CTTAAG | 1 cut(s) | 1636 |
| BfuAI | ACCTGC | 1 cut(s) | 1544 |
| BisI | GCNGC | 4 cut(s) | 1089, 1392, 1540, 1656 |
| BlsI | GCNGC | 4 cut(s) | 1090, 1393, 1541, 1657 |
| Bme1390I | CCNGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| Bme18I | GGWCC | 2 cut(s) | 1427, 1487 |
| BmgT120I | GGNCC | 3 cut(s) | 1427, 1487, 1559 |
| BmiI | GGNNCC | 1 cut(s) | 992 |
| BmrFI | CCNGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| BmrI | ACTGGG | 1 cut(s) | 1458 |
| BmsI | GCATC | 3 cut(s) | 1086, 1628, 1840 |
| BmtI | GCTAGC | 1 cut(s) | 1748 |
| BmuI | ACTGGG | 1 cut(s) | 1458 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 692, 724 |
| BpmI | CTGGAG | 3 cut(s) | 94, 461, 1317 |
| Bpu14I | TTCGAA | 2 cut(s) | 193, 499 |
| BpuEI | CTTGAG | 5 cut(s) | 534, 715, 895, 1371, 1679 |
| BsaAI | YACGTR | 2 cut(s) | 1310, 1433 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1124, 1854 |
| BsaI | GGTCTC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 2 cut(s) | 294, 1760 |
| BsaWI | WCCGGW | 1 cut(s) | 1022 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 484, 1106, 1436, 1665, 1785 |
| Bse1I | ACTGG | 6 cut(s) | 35, 77, 826, 1100, 1453, 1670 |
| Bse3DI | GCAATG | 1 cut(s) | 647 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1124, 1854 |
| BseBI | CCWGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| BseDI | CCNNGG | 2 cut(s) | 294, 1760 |
| BseGI | GGATG | 2 cut(s) | 580, 1101 |
| BseJI | GATNNNNATC | 2 cut(s) | 1124, 1854 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 484, 1106, 1436, 1665, 1785 |
| BseMI | GCAATG | 1 cut(s) | 647 |
| BseMII | CTCAG | 3 cut(s) | 728, 1905, 1910 |
| BseNI | ACTGG | 6 cut(s) | 35, 77, 826, 1100, 1453, 1670 |
| BseRI | GAGGAG | 1 cut(s) | 557 |
| BseSI | GKGCMC | 1 cut(s) | 1309 |
| BseXI | GCAGC | 4 cut(s) | 1075, 1378, 1526, 1642 |
| BshNI | GGYRCC | 1 cut(s) | 990 |
| BsiHKAI | GWGCWC | 1 cut(s) | 93 |
| BsiSI | CCGG | 2 cut(s) | 1023, 1786 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 484, 1106, 1436, 1665, 1785 |
| BsmAI | GTCTC | 4 cut(s) | 144, 552, 932, 1389 |
| BsmI | GAATGC | 1 cut(s) | 1090 |
| Bso31I | GGTCTC | 1 cut(s) | 144 |
| Bsp119I | TTCGAA | 2 cut(s) | 193, 499 |
| Bsp1286I | GDGCHC | 3 cut(s) | 93, 220, 1309 |
| Bsp1407I | TGTACA | 1 cut(s) | 1146 |
| Bsp143I | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| BspACI | CCGC | 2 cut(s) | 514, 1613 |
| BspCNI | CTCAG | 3 cut(s) | 727, 1906, 1909 |
| BspLI | GGNNCC | 1 cut(s) | 992 |
| BspMI | ACCTGC | 1 cut(s) | 1544 |
| BspOI | GCTAGC | 1 cut(s) | 1748 |
| BspPI | GGATC | 3 cut(s) | 137, 1262, 1364 |
| BspQI | GCTCTTC | 1 cut(s) | 98 |
| BspT104I | TTCGAA | 2 cut(s) | 193, 499 |
| BspT107I | GGYRCC | 1 cut(s) | 990 |
| BspTI | CTTAAG | 1 cut(s) | 1636 |
| BspTNI | GGTCTC | 1 cut(s) | 144 |
| BsrBI | CCGCTC | 1 cut(s) | 514 |
| BsrDI | GCAATG | 1 cut(s) | 647 |
| BsrGI | TGTACA | 1 cut(s) | 1146 |
| BsrI | ACTGG | 6 cut(s) | 35, 77, 826, 1100, 1453, 1670 |
| BssECI | CCNNGG | 2 cut(s) | 294, 1760 |
| BssMI | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| BssNAI | GTATAC | 3 cut(s) | 114, 1168, 1480 |
| BssSI | CACGAG | 1 cut(s) | 693 |
| BssT1I | CCWWGG | 1 cut(s) | 1760 |
| Bst1107I | GTATAC | 3 cut(s) | 114, 1168, 1480 |
| Bst2BI | CACGAG | 1 cut(s) | 693 |
| Bst2UI | CCWGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| Bst4CI | ACNGT | 6 cut(s) | 369, 571, 932, 1065, 1718, 1836 |
| Bst6I | CTCTTC | 7 cut(s) | 98, 319, 766, 772, 802, 930, 1367 |
| BstAFI | CTTAAG | 1 cut(s) | 1636 |
| BstAUI | TGTACA | 1 cut(s) | 1146 |
| BstBAI | YACGTR | 2 cut(s) | 1310, 1433 |
| BstBI | TTCGAA | 2 cut(s) | 193, 499 |
| BstC8I | GCNNGC | 2 cut(s) | 597, 1746 |
| BstDEI | CTNAG | 5 cut(s) | 714, 1184, 1199, 1896, 1914 |
| BstF5I | GGATG | 2 cut(s) | 580, 1101 |
| BstKTI | GATC | 9 cut(s) | 80, 129, 145, 309, 984, 1270, 1359, 1494, 1858 |
| BstMAI | GTCTC | 4 cut(s) | 144, 552, 932, 1389 |
| BstMBI | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 88, 911, 959, 1419, 1880 |
| BstNI | CCWGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstSCI | CCNGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| BstSFI | CTRYAG | 1 cut(s) | 1006 |
| BstSLI | GKGCMC | 1 cut(s) | 1309 |
| BstV1I | GCAGC | 4 cut(s) | 1075, 1378, 1526, 1642 |
| BstX2I | RGATCY | 2 cut(s) | 142, 1267 |
| BstYI | RGATCY | 2 cut(s) | 142, 1267 |
| BstZ17I | GTATAC | 3 cut(s) | 114, 1168, 1480 |
| BtsCI | GGATG | 2 cut(s) | 580, 1101 |
| BtsIMutI | CAGTG | 7 cut(s) | 70, 576, 833, 937, 964, 1632, 1663 |
| BveI | ACCTGC | 1 cut(s) | 1544 |
| Cac8I | GCNNGC | 2 cut(s) | 597, 1746 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1295 |
| Cfr13I | GGNCC | 3 cut(s) | 1427, 1487, 1559 |
| Csp6I | GTAC | 2 cut(s) | 991, 1147 |
| CviAII | CATG | 7 cut(s) | 272, 842, 902, 987, 1234, 1302, 1740 |
| CviQI | GTAC | 2 cut(s) | 991, 1147 |
| DdeI | CTNAG | 5 cut(s) | 714, 1184, 1199, 1896, 1914 |
| DpnI | GATC | 9 cut(s) | 79, 128, 144, 308, 983, 1269, 1358, 1493, 1857 |
| DpnII | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| EaeI | YGGCCR | 2 cut(s) | 429, 1787 |
| Eam1104I | CTCTTC | 7 cut(s) | 98, 319, 766, 772, 802, 930, 1367 |
| EarI | CTCTTC | 7 cut(s) | 98, 319, 766, 772, 802, 930, 1367 |
| Ecl136II | GAGCTC | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 1 cut(s) | 1760 |
| Eco147I | AGGCCT | 3 cut(s) | 293, 599, 1807 |
| Eco24I | GRGCYC | 2 cut(s) | 93, 220 |
| Eco31I | GGTCTC | 1 cut(s) | 144 |
| Eco32I | GATATC | 1 cut(s) | 1783 |
| Eco47I | GGWCC | 2 cut(s) | 1427, 1487 |
| Eco53kI | GAGCTC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 3 cut(s) | 365, 1154, 1608 |
| Eco72I | CACGTG | 1 cut(s) | 1310 |
| EcoICRI | GAGCTC | 1 cut(s) | 91 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1559 |
| EcoRII | CCWGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| EcoRV | GATATC | 1 cut(s) | 1783 |
| EcoT14I | CCWWGG | 1 cut(s) | 1760 |
| EcoT38I | GRGCYC | 2 cut(s) | 93, 220 |
| ErhI | CCWWGG | 1 cut(s) | 1760 |
| FaeI | CATG | 7 cut(s) | 275, 845, 905, 990, 1237, 1305, 1743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1503, 1535 |
| FatI | CATG | 7 cut(s) | 271, 841, 901, 986, 1233, 1301, 1739 |
| FauNDI | CATATG | 1 cut(s) | 1017 |
| FbaI | TGATCA | 3 cut(s) | 126, 306, 1855 |
| FblI | GTMKAC | 3 cut(s) | 113, 1167, 1479 |
| Fnu4HI | GCNGC | 4 cut(s) | 1089, 1392, 1540, 1656 |
| FokI | GGATG | 2 cut(s) | 587, 1108 |
| FriOI | GRGCYC | 2 cut(s) | 93, 220 |
| Fsp4HI | GCNGC | 4 cut(s) | 1089, 1392, 1540, 1656 |
| FspBI | CTAG | 2 cut(s) | 1335, 1745 |
| GluI | GCNGC | 4 cut(s) | 1089, 1392, 1540, 1656 |
| GsuI | CTGGAG | 3 cut(s) | 94, 461, 1317 |
| HapII | CCGG | 2 cut(s) | 1023, 1786 |
| Hin1II | CATG | 7 cut(s) | 275, 845, 905, 990, 1237, 1305, 1743 |
| HindIII | AAGCTT | 1 cut(s) | 664 |
| HpaII | CCGG | 2 cut(s) | 1023, 1786 |
| HphI | GGTGA | 6 cut(s) | 136, 355, 710, 986, 1249, 1575 |
| Hpy166II | GTNNAC | 5 cut(s) | 114, 749, 977, 1168, 1480 |
| Hpy188III | TCNNGA | 6 cut(s) | 478, 551, 1296, 1369, 1507, 1913 |
| Hpy8I | GTNNAC | 5 cut(s) | 114, 749, 977, 1168, 1480 |
| Hpy99I | CGWCG | 2 cut(s) | 366, 1278 |
| HpyAV | CCTTC | 8 cut(s) | 280, 334, 442, 515, 777, 873, 1216, 1670 |
| HpyCH4III | ACNGT | 6 cut(s) | 369, 571, 932, 1065, 1718, 1836 |
| HpyCH4IV | ACGT | 2 cut(s) | 1309, 1432 |
| HpyCH4V | TGCA | 8 cut(s) | 269, 352, 419, 595, 652, 914, 1091, 1394 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 88, 911, 959, 1419, 1880 |
| HpyF3I | CTNAG | 5 cut(s) | 714, 1184, 1199, 1896, 1914 |
| HpySE526I | ACGT | 2 cut(s) | 1309, 1432 |
| Hsp92II | CATG | 7 cut(s) | 275, 845, 905, 990, 1237, 1305, 1743 |
| KpnI | GGTACC | 1 cut(s) | 994 |
| Ksp22I | TGATCA | 3 cut(s) | 126, 306, 1855 |
| Kzo9I | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| LguI | GCTCTTC | 1 cut(s) | 98 |
| LmnI | GCTCC | 4 cut(s) | 88, 236, 511, 1298 |
| Lsp1109I | GCAGC | 4 cut(s) | 1075, 1378, 1526, 1642 |
| LweI | GCATC | 3 cut(s) | 1086, 1628, 1840 |
| MaeI | CTAG | 2 cut(s) | 1335, 1745 |
| MaeII | ACGT | 2 cut(s) | 1309, 1432 |
| MaeIII | GTNAC | 7 cut(s) | 274, 529, 734, 1025, 1187, 1672, 1813 |
| MalI | GATC | 9 cut(s) | 79, 128, 144, 308, 983, 1269, 1358, 1493, 1857 |
| MbiI | CCGCTC | 1 cut(s) | 514 |
| MboI | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| MfeI | CAATTG | 1 cut(s) | 240 |
| MflI | RGATCY | 2 cut(s) | 142, 1267 |
| MhlI | GDGCHC | 3 cut(s) | 93, 220, 1309 |
| MlsI | TGGCCA | 1 cut(s) | 431 |
| MluNI | TGGCCA | 1 cut(s) | 431 |
| MlyI | GAGTC | 8 cut(s) | 349, 554, 649, 710, 808, 1064, 1301, 1925 |
| MmeI | TCCRAC | 2 cut(s) | 606, 864 |
| Mox20I | TGGCCA | 1 cut(s) | 431 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 846 |
| Msp20I | TGGCCA | 1 cut(s) | 431 |
| MspA1I | CMGCKG | 2 cut(s) | 1132, 1655 |
| MspCI | CTTAAG | 1 cut(s) | 1636 |
| MspI | CCGG | 2 cut(s) | 1023, 1786 |
| MspR9I | CCNGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| MunI | CAATTG | 1 cut(s) | 240 |
| Mva1269I | GAATGC | 1 cut(s) | 1090 |
| MvaI | CCWGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 88, 911, 959, 1419, 1880 |
| NdeI | CATATG | 1 cut(s) | 1017 |
| NdeII | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| NheI | GCTAGC | 1 cut(s) | 1744 |
| NlaIII | CATG | 7 cut(s) | 275, 845, 905, 990, 1237, 1305, 1743 |
| NlaIV | GGNNCC | 1 cut(s) | 992 |
| NmuCI | GTSAC | 5 cut(s) | 529, 1025, 1187, 1672, 1813 |
| NspI | RCATGY | 1 cut(s) | 275 |
| NspV | TTCGAA | 2 cut(s) | 193, 499 |
| PceI | AGGCCT | 3 cut(s) | 293, 599, 1807 |
| PciI | ACATGT | 1 cut(s) | 271 |
| PciSI | GCTCTTC | 1 cut(s) | 98 |
| PctI | GAATGC | 1 cut(s) | 1090 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 4 cut(s) | 7, 190, 245, 1466 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 484 |
| PfoI | TCCNGGA | 1 cut(s) | 145 |
| PkrI | GCNGC | 4 cut(s) | 1090, 1393, 1541, 1657 |
| PleI | GAGTC | 8 cut(s) | 349, 553, 649, 709, 807, 1063, 1300, 1924 |
| PmaCI | CACGTG | 1 cut(s) | 1310 |
| PmlI | CACGTG | 1 cut(s) | 1310 |
| PpsI | GAGTC | 8 cut(s) | 349, 553, 649, 709, 807, 1063, 1300, 1924 |
| Ppu21I | YACGTR | 2 cut(s) | 1310, 1433 |
| PscI | ACATGT | 1 cut(s) | 271 |
| PshBI | ATTAAT | 1 cut(s) | 1283 |
| Psp124BI | GAGCTC | 1 cut(s) | 93 |
| Psp6I | CCWGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| PspCI | CACGTG | 1 cut(s) | 1310 |
| PspGI | CCWGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| PspN4I | GGNNCC | 1 cut(s) | 992 |
| PspPI | GGNCC | 3 cut(s) | 1427, 1487, 1559 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1295 |
| PsuI | RGATCY | 2 cut(s) | 142, 1267 |
| PvuII | CAGCTG | 2 cut(s) | 1132, 1655 |
| RsaI | GTAC | 2 cut(s) | 992, 1148 |
| RsaNI | GTAC | 2 cut(s) | 991, 1147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 846 |
| SacI | GAGCTC | 1 cut(s) | 93 |
| SapI | GCTCTTC | 1 cut(s) | 98 |
| SatI | GCNGC | 4 cut(s) | 1089, 1392, 1540, 1656 |
| Sau3AI | GATC | 9 cut(s) | 77, 126, 142, 306, 981, 1267, 1356, 1491, 1855 |
| Sau96I | GGNCC | 3 cut(s) | 1427, 1487, 1559 |
| SchI | GAGTC | 8 cut(s) | 349, 554, 649, 710, 808, 1064, 1301, 1925 |
| ScrFI | CCNGG | 5 cut(s) | 147, 295, 995, 1179, 1707 |
| SduI | GDGCHC | 3 cut(s) | 93, 220, 1309 |
| SfaNI | GCATC | 3 cut(s) | 1086, 1628, 1840 |
| SfcI | CTRYAG | 1 cut(s) | 1006 |
| SfuI | TTCGAA | 2 cut(s) | 193, 499 |
| SinI | GGWCC | 2 cut(s) | 1427, 1487 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 846 |
| SmlI | CTYRAG | 6 cut(s) | 549, 730, 874, 1386, 1636, 1694 |
| SmoI | CTYRAG | 6 cut(s) | 549, 730, 874, 1386, 1636, 1694 |
| SseBI | AGGCCT | 3 cut(s) | 293, 599, 1807 |
| SsiI | CCGC | 2 cut(s) | 514, 1613 |
| SspMI | CTAG | 2 cut(s) | 1335, 1745 |
| SstI | GAGCTC | 1 cut(s) | 93 |
| StuI | AGGCCT | 3 cut(s) | 293, 599, 1807 |
| StyD4I | CCNGG | 5 cut(s) | 145, 293, 993, 1177, 1705 |
| StyI | CCWWGG | 1 cut(s) | 1760 |
| TaaI | ACNGT | 6 cut(s) | 369, 571, 932, 1065, 1718, 1836 |
| TaiI | ACGT | 2 cut(s) | 1312, 1435 |
| TaqI | TCGA | 8 cut(s) | 10, 193, 284, 372, 499, 802, 1273, 1728 |
| TatI | WGTACW | 1 cut(s) | 1146 |
| TfiI | GAWTC | 4 cut(s) | 7, 190, 245, 1466 |
| TscAI | CASTG | 7 cut(s) | 77, 576, 833, 937, 964, 1632, 1670 |
| TseFI | GTSAC | 5 cut(s) | 529, 1025, 1187, 1672, 1813 |
| TseI | GCWGC | 4 cut(s) | 1088, 1391, 1539, 1655 |
| Tsp45I | GTSAC | 5 cut(s) | 529, 1025, 1187, 1672, 1813 |
| TspDTI | ATGAA | 7 cut(s) | 461, 618, 782, 879, 890, 1473, 1607 |
| TspGWI | ACGGA | 1 cut(s) | 524 |
| TspRI | CASTG | 7 cut(s) | 77, 576, 833, 937, 964, 1632, 1670 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 484 |
| Vha464I | CTTAAG | 1 cut(s) | 1636 |
| VpaK11BI | GGWCC | 2 cut(s) | 1427, 1487 |
| VspI | ATTAAT | 1 cut(s) | 1283 |
| XapI | RAATTY | 2 cut(s) | 44, 1239 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XmiI | GTMKAC | 3 cut(s) | 113, 1167, 1479 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 1335, 1745 |