Rroxscaffold_2G00104760

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000154
Physical Location & Seq
Forward (+)
28069054 .. 28084032
14979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104760.1

Sequence Viewer

Length: 549 bp
ATGTCGAACTTGTTGGGTTTACTGATAATGATTATGCTTGGGGATGTAAATGATAGAAGGAGTACTTCCGGTTATGTGTTTATGATGGGTAGTGGGGCTGTTTCTTGGTCATCAAAGAAGCAGCAAGTTGTCTCTTTGTCAACAACTGAAGCTGAGTTCATTGTCGGAGCATCATGTGCTTGTCAAGCAGTACGGTTAAGGAGAATGCTTGGAGAATTAAATTTTCCTCAAGTGGAAGCTACTGCAGTTTATTGTGACAATAGTTCTACCATCAAGTTGTCAAAGAATCCGGTGTTACATGGCAGGAGCAAACACATTGATGTAAGGTACCATTGCCTTCGTGATTTGACAAAGGATGGCATCATTGAGTTGGTTCATTGTAAAAGTGAAGATCAGATTGCTGATATCCTAACAAAGCCTCTCAAGATTGCTACATTTATGAGGCTGCGAGGACTACTCGGTATGTGTTCTTTGAAAGAAGTTGCTGGTGATATTATTCATGCACGTGGATTGACTTGCTGGAGTTTCTTAGTTAAACTGATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

182

Amino Acids

20.12

Weight (kDa)

9.03

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 168
AcvI CACGTG 1 cut(s) 506
AfaI GTAC 3 cut(s) 64, 192, 329
AgsI TTSAA 1 cut(s) 475
AluBI AGCT 2 cut(s) 152, 239
AluI AGCT 2 cut(s) 152, 239
Alw26I GTCTC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 121, 445
ApoI RAATTY 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 500
BanI GGYRCC 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 506
BbvI GCAGC 2 cut(s) 133, 432
BccI CCATC 3 cut(s) 79, 278, 350
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 122, 446
BlsI GCNGC 2 cut(s) 123, 447
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 2 cut(s) 179, 369
BplI GAGNNNNNCTC 2 cut(s) 441, 473
BpmI CTGGAG 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 213, 407
BsaAI YACGTR 1 cut(s) 506
BsaWI WCCGGW 2 cut(s) 68, 289
Bse3DI GCAATG 1 cut(s) 331
BseGI GGATG 2 cut(s) 49, 361
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 133, 432
BshNI GGYRCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 69, 290
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 331
BssMI GATC 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 153, 529
BstF5I GGATG 2 cut(s) 49, 361
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 133, 432
BtsCI GGATG 2 cut(s) 49, 361
Csp6I GTAC 3 cut(s) 63, 191, 328
CviAII CATG 3 cut(s) 174, 299, 500
CviJI RGCY 5 cut(s) 98, 152, 239, 418, 445
CviKI_1 RGCY 5 cut(s) 98, 152, 239, 418, 445
CviQI GTAC 3 cut(s) 63, 191, 328
DdeI CTNAG 2 cut(s) 153, 529
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 506
EcoRV GATATC 1 cut(s) 406
FaeI CATG 3 cut(s) 177, 302, 503
FaiI YATR 8 cut(s) 35, 75, 83, 175, 300, 440, 464, 501
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 3 cut(s) 173, 298, 499
Fnu4HI GCNGC 2 cut(s) 122, 446
FokI GGATG 2 cut(s) 56, 368
Fsp4HI GCNGC 2 cut(s) 122, 446
GluI GCNGC 2 cut(s) 122, 446
GsuI CTGGAG 1 cut(s) 541
HapII CCGG 2 cut(s) 69, 290
Hin1II CATG 3 cut(s) 177, 302, 503
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 286
HpaII CCGG 2 cut(s) 69, 290
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 20, 141
Hpy188I TCNGA 2 cut(s) 167, 396
Hpy188III TCNNGA 3 cut(s) 341, 424, 546
Hpy8I GTNNAC 2 cut(s) 20, 141
HpyAV CCTTC 2 cut(s) 51, 347
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 2 cut(s) 245, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 2 cut(s) 153, 529
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 3 cut(s) 177, 302, 503
KpnI GGTACC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 167, 306
LpnPI CCDG 5 cut(s) 82, 289, 303, 471, 505
Lsp1109I GCAGC 2 cut(s) 133, 432
LweI GCATC 2 cut(s) 179, 369
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 2 cut(s) 254, 294
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 1 cut(s) 401
MluCI AATT 2 cut(s) 215, 220
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 237, 429, 435, 443
MseI TTAA 3 cut(s) 197, 218, 534
MslI CAYNNNNRTG 2 cut(s) 318, 504
MspI CCGG 2 cut(s) 69, 290
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 177, 302, 503
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 254
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 123, 447
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 506
PspCI CACGTG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 247
RsaI GTAC 3 cut(s) 64, 192, 329
RsaNI GTAC 3 cut(s) 63, 191, 328
RseI CAYNNNNRTG 2 cut(s) 318, 504
SaqAI TTAA 3 cut(s) 197, 218, 534
SatI GCNGC 2 cut(s) 122, 446
Sau3AI GATC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 64
SetI ASST 4 cut(s) 154, 241, 329, 508
SfaNI GCATC 2 cut(s) 179, 369
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 318, 504
SmlI CTYRAG 2 cut(s) 228, 422
SmoI CTYRAG 2 cut(s) 228, 422
Sse9I AATT 2 cut(s) 215, 220
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 215, 220
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 3 cut(s) 197, 218, 534
Tru9I TTAA 3 cut(s) 197, 218, 534
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 121, 445
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 148, 365, 488
XapI RAATTY 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.