Rw3G023350

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000154
Physical Location & Seq
Reverse (-)
29251463 .. 29252761
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023350.1

Sequence Viewer

Length: 1143 bp
ATGGCTACAGTAGCAAACTTTGTTCAACCAGCGATTCCAAAGTTTGATGGTTATTATGACCATTGGTCGATGTTGATGGAAAACTTCCTTCGTTCGAAGGAATATTGGAGTTTAGTAGAGACAGGAATTACTATGCCTCCTAGTGGGTCAGAACCAACAGATGTTCAACGTAAGCAGATCGAGGATCAGAAGCTGAAAGACCTCAAGGTCAAGAACTACTTATTCCAGTCTATAGATCGAGCAATAATGGAGACAATTCTTGTCAAAGATACAGCAAAACAGATATGGGACTCGATGAAATTGAAGTACCAAGGGTCAACCAGAGTGAAGAGAGCTCAACTACAAGCCCTAAGAAGAGAGTTCGAGGTTTTACAAATGAAGGAAGGAGAAGGAGTTGACGAGTATTTTGCTCGCACTCTAACAATTGCCAACAAAATGAAGATTCACGGAGAGAGGATGGAGCAAGTGGTTATAATTGAGAAGATCTTACGGTCTATGACTGCTTGCTTTGACAATGTCGTGAGGAACAAATACTCAAGGTCTCGTTTGAGGACAAGTTTGGAAGTAGAGGAAGGGGACGAGGAGCATTCAGGGCAAGAGGCCGAGCTAGGGCATTTTCAATACGAATGCCCTAGTTGGGAGAAGGCTGCAAACTATGCTGAGTTAGATGAGGATGAGGAGCTTCTTCTGATGTCCTACGTTGAACTCAACAATTCGAAAAGGGAAGTCGTGTGGTTTCTCGATTCAGGTTGTTCTAACCACATGACCGGGAACAAGCAGTGGTTTGAAGATTTGGATGAGCAATTCAGACATTCAGTGAAGCTAGGGAATGACTCGAGAATGCCGGTGATGGGAAAAGGTAGAATCAAGCTCGAGGTTGGAGGAGTAACTCAGGTAGTAACTGATGTTTTCTACATTCCTGATTTGAAAAACAATCTTTTAAGCATTGGTCAGCTACAAGAGAAGGGGTTAGCAATTTTAATACAAGATGGAGCATGTAGGATCTATCATCCTAGAAGAGGGCTCATTATGCAGACACAAATGTCTGCAAACAGGATGTTCGTGTTATTAGCAAACTTGACACCTCAGCTACCTACATGCCTCAACATAGCTTCTGAAGATACCTCAGATCTTTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

380

Amino Acids

43.92

Weight (kDa)

5.55

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 26 - 188 2.6e-22 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 245 - 323 4.4e-30 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AasI GACNNNNNNGTC 2 cut(s) 206, 1042
AclWI GGATC 2 cut(s) 192, 1010
AcuI CTGAAG 1 cut(s) 1137
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 5 cut(s) 143, 609, 637, 851, 1019
AgsI TTSAA 7 cut(s) 26, 167, 304, 620, 704, 788, 928
AhdI GACNNNNNGTC 1 cut(s) 64
AluBI AGCT 9 cut(s) 193, 335, 607, 682, 823, 871, 955, 1090, 1112
AluI AGCT 9 cut(s) 193, 335, 607, 682, 823, 871, 955, 1090, 1112
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 3 cut(s) 113, 245, 546
AlwI GGATC 2 cut(s) 192, 1010
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 2 cut(s) 835, 872
AoxI GGCC 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 647
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuC2I CCSGG 1 cut(s) 769
AsuHPI GGTGA 1 cut(s) 859
AsuII TTCGAA 2 cut(s) 95, 716
AvaI CYCGRG 2 cut(s) 835, 872
BanII GRGCYC 2 cut(s) 337, 1026
Bbv12I GWGCWC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 1086
BbvI GCAGC 1 cut(s) 634
BccI CCATC 5 cut(s) 41, 70, 451, 844, 983
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcnI CCSGG 1 cut(s) 769
BcoDI GTCTC 3 cut(s) 113, 245, 546
BfaI CTAG 5 cut(s) 141, 608, 633, 824, 1014
BfmI CTRYAG 2 cut(s) 6, 231
BglII AGATCT 2 cut(s) 483, 1129
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 769
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 835, 872
BmrFI CCNGG 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 1086
Bpu14I TTCGAA 2 cut(s) 95, 716
BpuEI CTTGAG 2 cut(s) 188, 520
BpuMI CCSGG 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 378, 408
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 609, 637, 851, 1019
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 5 cut(s) 462, 679, 802, 1009, 1062
BseLI CCNNNNNNNGG 5 cut(s) 143, 609, 637, 851, 1019
BseMII CTCAG 4 cut(s) 651, 905, 1100, 1140
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 596, 692, 897
BseXI GCAGC 1 cut(s) 634
BshFI GGCC 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 2 cut(s) 835, 872
BsiSI CCGG 2 cut(s) 768, 845
BslFI GGGAC 2 cut(s) 302, 590
BslI CCNNNNNNNGG 5 cut(s) 143, 609, 637, 851, 1019
BsmAI GTCTC 3 cut(s) 113, 245, 546
BsmFI GGGAC 2 cut(s) 302, 590
BsmI GAATGC 3 cut(s) 586, 632, 846
BsnI GGCC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 546
BsoBI CYCGRG 2 cut(s) 835, 872
Bsp119I TTCGAA 2 cut(s) 95, 716
Bsp1286I GDGCHC 2 cut(s) 337, 1026
Bsp143I GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
BspANI GGCC 1 cut(s) 602
BspCNI CTCAG 4 cut(s) 652, 904, 1099, 1139
BspPI GGATC 2 cut(s) 192, 1010
BspT104I TTCGAA 2 cut(s) 95, 716
BspTNI GGTCTC 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 844
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 10, 492
Bst6I CTCTTC 3 cut(s) 323, 349, 1012
BstAPI GCANNNNNTGC 1 cut(s) 656
BstBI TTCGAA 2 cut(s) 95, 716
BstC8I GCNNGC 2 cut(s) 412, 505
BstDEI CTNAG 5 cut(s) 350, 660, 891, 1086, 1126
BstENI CCTNNNNNAGG 1 cut(s) 1017
BstF5I GGATG 5 cut(s) 462, 679, 802, 1009, 1062
BstKTI GATC 6 cut(s) 180, 187, 238, 486, 1005, 1132
BstMAI GTCTC 3 cut(s) 113, 245, 546
BstMBI GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
BstMWI GCNNNNNNNGC 4 cut(s) 11, 592, 656, 1030
BstNSI RCATGY 2 cut(s) 999, 1101
BstSCI CCNGG 1 cut(s) 767
BstSFI CTRYAG 2 cut(s) 6, 231
BstV1I GCAGC 1 cut(s) 634
BstX2I RGATCY 3 cut(s) 483, 1002, 1129
BstYI RGATCY 3 cut(s) 483, 1002, 1129
BsuRI GGCC 1 cut(s) 602
BtsCI GGATG 5 cut(s) 462, 679, 802, 1009, 1062
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 2 cut(s) 785, 822
Cac8I GCNNGC 2 cut(s) 412, 505
CaiI CAGNNNCTG 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 844
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 763, 996, 1098
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 5 cut(s) 350, 660, 891, 1086, 1126
DpnI GATC 6 cut(s) 179, 186, 237, 485, 1004, 1131
DpnII GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
DrdI GACNNNNNNGTC 2 cut(s) 206, 1042
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 2 cut(s) 206, 1042
Eam1104I CTCTTC 3 cut(s) 323, 349, 1012
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 3 cut(s) 323, 349, 1012
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 337, 1026
Eco31I GGTCTC 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 1137
Eco88I CYCGRG 2 cut(s) 835, 872
EcoICRI GAGCTC 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 1017
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 337, 1026
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 3 cut(s) 766, 999, 1101
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 2 cut(s) 302, 590
FatI CATG 3 cut(s) 762, 995, 1097
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 5 cut(s) 469, 686, 809, 996, 1069
FriOI GRGCYC 2 cut(s) 337, 1026
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 5 cut(s) 141, 608, 633, 824, 1014
GluI GCNGC 1 cut(s) 648
HaeIII GGCC 1 cut(s) 602
HapII CCGG 2 cut(s) 768, 845
Hin1II CATG 3 cut(s) 766, 999, 1101
HincII GTYRAC 2 cut(s) 318, 397
HindII GTYRAC 2 cut(s) 318, 397
HinfI GANTC 6 cut(s) 34, 290, 442, 743, 833, 864
HpaII CCGG 2 cut(s) 768, 845
HphI GGTGA 1 cut(s) 859
Hpy166II GTNNAC 2 cut(s) 318, 397
Hpy188I TCNGA 6 cut(s) 151, 189, 690, 809, 1117, 1129
Hpy188III TCNNGA 5 cut(s) 211, 520, 740, 837, 920
Hpy8I GTNNAC 2 cut(s) 318, 397
HpyAV CCTTC 8 cut(s) 91, 98, 373, 377, 383, 566, 637, 958
HpyCH4III ACNGT 2 cut(s) 10, 492
HpyCH4IV ACGT 2 cut(s) 169, 699
HpyCH4V TGCA 3 cut(s) 650, 1033, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 592, 656, 1030
HpyF3I CTNAG 5 cut(s) 350, 660, 891, 1086, 1126
HpySE526I ACGT 2 cut(s) 169, 699
Hsp92II CATG 3 cut(s) 766, 999, 1101
Kzo9I GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
LmnI GCTCC 4 cut(s) 460, 583, 679, 992
Lsp1109I GCAGC 1 cut(s) 634
MaeI CTAG 5 cut(s) 141, 608, 633, 824, 1014
MaeII ACGT 2 cut(s) 169, 699
MaeIII GTNAC 2 cut(s) 886, 898
MalI GATC 6 cut(s) 179, 186, 237, 485, 1004, 1131
MboI GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
MboII GAAGA 8 cut(s) 340, 366, 451, 493, 677, 800, 1029, 1130
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 3 cut(s) 483, 1002, 1129
MhlI GDGCHC 2 cut(s) 337, 1026
MluCI AATT 8 cut(s) 126, 255, 299, 423, 474, 712, 803, 975
MlyI GAGTC 2 cut(s) 284, 827
MmeI TCCRAC 1 cut(s) 859
MseI TTAA 2 cut(s) 941, 980
MspI CCGG 2 cut(s) 768, 845
MspR9I CCNGG 1 cut(s) 769
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 3 cut(s) 586, 632, 846
MwoI GCNNNNNNNGC 4 cut(s) 11, 592, 656, 1030
NciI CCSGG 1 cut(s) 769
NdeII GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
NlaIII CATG 3 cut(s) 766, 999, 1101
NmeAIII GCCGAG 1 cut(s) 628
NspI RCATGY 2 cut(s) 999, 1101
NspV TTCGAA 2 cut(s) 95, 716
PaeR7I CTCGAG 2 cut(s) 835, 872
PctI GAATGC 3 cut(s) 586, 632, 846
PfeI GAWTC 4 cut(s) 34, 442, 743, 864
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 2 cut(s) 284, 827
PpsI GAGTC 2 cut(s) 284, 827
PsiI TTATAA 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 337
PspXI VCTCGAGB 1 cut(s) 872
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 483, 1002, 1129
PsyI GACNNNGTC 1 cut(s) 515
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 941, 980
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 6 cut(s) 177, 184, 235, 483, 1002, 1129
SchI GAGTC 2 cut(s) 284, 827
ScrFI CCNGG 1 cut(s) 769
SduI GDGCHC 2 cut(s) 337, 1026
SfcI CTRYAG 2 cut(s) 6, 231
Sfr274I CTCGAG 2 cut(s) 835, 872
SfuI TTCGAA 2 cut(s) 95, 716
SlaI CTCGAG 2 cut(s) 835, 872
SmlI CTYRAG 4 cut(s) 203, 535, 835, 872
SmoI CTYRAG 4 cut(s) 203, 535, 835, 872
Sse9I AATT 8 cut(s) 126, 255, 299, 423, 474, 712, 803, 975
SspI AATATT 1 cut(s) 104
SspMI CTAG 5 cut(s) 141, 608, 633, 824, 1014
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 767
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 10, 492
TaiI ACGT 2 cut(s) 172, 702
TasI AATT 8 cut(s) 126, 255, 299, 423, 474, 712, 803, 975
TfiI GAWTC 4 cut(s) 34, 442, 743, 864
Tru1I TTAA 2 cut(s) 941, 980
Tru9I TTAA 2 cut(s) 941, 980
TscAI CASTG 2 cut(s) 785, 822
TseI GCWGC 1 cut(s) 647
TspDTI ATGAA 3 cut(s) 311, 392, 452
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 2 cut(s) 785, 822
Tth111I GACNNNGTC 1 cut(s) 515
XagI CCTNNNNNAGG 1 cut(s) 1017
XceI RCATGY 2 cut(s) 999, 1101
XhoI CTCGAG 2 cut(s) 835, 872
XspI CTAG 5 cut(s) 141, 608, 633, 824, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.