Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 148 - 292 | 6.6e-31 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 425 - 504 | 2.4e-25 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 549 - 594 | 5.1e-12 | GAG-pre-integrase domain |
| RVT_2 | PF07727 | 628 - 858 | 1.3e-77 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| Metallophos_C | PF14008 | 1167 - 1227 | 1.5e-13 | Iron/zinc purple acid phosphatase-like protein C |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1905 |
| Acc36I | ACCTGC | 1 cut(s) | 2299 |
| Acc65I | GGTACC | 1 cut(s) | 3642 |
| AccB1I | GGYRCC | 1 cut(s) | 3642 |
| AccI | GTMKAC | 2 cut(s) | 579, 3186 |
| AciI | CCGC | 2 cut(s) | 249, 1287 |
| AclWI | GGATC | 5 cut(s) | 259, 2749, 2762, 3595, 3608 |
| AcoI | YGGCCR | 2 cut(s) | 1690, 3592 |
| AcsI | RAATTY | 8 cut(s) | 4, 516, 1074, 1142, 1474, 1699, 2392, 3681 |
| AcuI | CTGAAG | 2 cut(s) | 261, 3155 |
| AdeI | CACNNNGTG | 1 cut(s) | 2179 |
| AfaI | GTAC | 7 cut(s) | 408, 1168, 1402, 2776, 3349, 3410, 3644 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1938, 3652 |
| AflII | CTTAAG | 1 cut(s) | 2189 |
| AflIII | ACRYGT | 1 cut(s) | 3442 |
| AgeI | ACCGGT | 1 cut(s) | 2011 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3073 |
| AhlI | ACTAGT | 1 cut(s) | 1856 |
| AjnI | CCWGG | 4 cut(s) | 2637, 3311, 3338, 3651 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 831, 863, 3573, 3605 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3641, 3673 |
| Alw21I | GWGCWC | 2 cut(s) | 2175, 2876 |
| AlwI | GGATC | 5 cut(s) | 259, 2749, 2762, 3595, 3608 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1290, 2963 |
| Ama87I | CYCGRG | 2 cut(s) | 1353, 1982 |
| AoxI | GGCC | 4 cut(s) | 1690, 2038, 2206, 3592 |
| ApeKI | GCWGC | 9 cut(s) | 1375, 1806, 2054, 2690, 2744, 3280, 3585, 3697, 3711 |
| ApoI | RAATTY | 8 cut(s) | 4, 516, 1074, 1142, 1474, 1699, 2392, 3681 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 802, 834, 3613, 3645 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| AsiGI | ACCGGT | 1 cut(s) | 2011 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 519, 2586 |
| Asp718I | GGTACC | 1 cut(s) | 3642 |
| AspS9I | GGNCC | 2 cut(s) | 3358, 3500 |
| AsuC2I | CCSGG | 2 cut(s) | 1983, 1984 |
| AsuHPI | GGTGA | 8 cut(s) | 734, 1109, 1796, 2621, 3044, 3214, 3505, 3622 |
| AsuII | TTCGAA | 2 cut(s) | 1064, 3729 |
| AsuNHI | GCTAGC | 1 cut(s) | 1186 |
| AvaI | CYCGRG | 2 cut(s) | 1353, 1982 |
| AvaII | GGWCC | 2 cut(s) | 3358, 3500 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1236, 1269 |
| BalI | TGGCCA | 2 cut(s) | 1692, 3594 |
| BamHI | GGATCC | 2 cut(s) | 2754, 3600 |
| BanI | GGYRCC | 1 cut(s) | 3642 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3128, 3160 |
| BauI | CACGAG | 1 cut(s) | 1571 |
| BbsI | GAAGAC | 2 cut(s) | 1035, 3171 |
| Bbv12I | GWGCWC | 2 cut(s) | 2175, 2876 |
| BbvI | GCAGC | 9 cut(s) | 1387, 1793, 2041, 2677, 2731, 3292, 3597, 3698, 3709 |
| BccI | CCATC | 7 cut(s) | 51, 1357, 1642, 1919, 2477, 2594, 3538 |
| BceAI | ACGGC | 3 cut(s) | 1323, 1394, 2970 |
| BciT130I | CCWGG | 4 cut(s) | 2639, 3313, 3340, 3653 |
| BciVI | GTATCC | 1 cut(s) | 1766 |
| BcnI | CCSGG | 2 cut(s) | 1983, 1984 |
| BcuI | ACTAGT | 1 cut(s) | 1856 |
| BfmI | CTRYAG | 2 cut(s) | 580, 1291 |
| BfrI | CTTAAG | 1 cut(s) | 2189 |
| BfuAI | ACCTGC | 1 cut(s) | 2299 |
| BfuI | GTATCC | 1 cut(s) | 1766 |
| Bme1390I | CCNGG | 6 cut(s) | 1983, 1984, 2639, 3313, 3340, 3653 |
| Bme18I | GGWCC | 2 cut(s) | 3358, 3500 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3073 |
| BmeT110I | CYCGRG | 2 cut(s) | 1353, 1982 |
| BmgT120I | GGNCC | 2 cut(s) | 3358, 3500 |
| BmiI | GGNNCC | 6 cut(s) | 170, 313, 1930, 2756, 3602, 3644 |
| BmrFI | CCNGG | 6 cut(s) | 1983, 1984, 2639, 3313, 3340, 3653 |
| BmrI | ACTGGG | 2 cut(s) | 76, 2854 |
| BmsI | GCATC | 6 cut(s) | 463, 2602, 2930, 3148, 3340, 3723 |
| BmtI | GCTAGC | 1 cut(s) | 1190 |
| BmuI | ACTGGG | 2 cut(s) | 76, 2854 |
| BpiI | GAAGAC | 2 cut(s) | 1035, 3171 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2231, 2263 |
| BpmI | CTGGAG | 2 cut(s) | 377, 590 |
| Bpu14I | TTCGAA | 2 cut(s) | 1064, 3729 |
| BpuEI | CTTGAG | 5 cut(s) | 927, 1697, 2130, 2979, 3626 |
| BpuMI | CCSGG | 2 cut(s) | 1983, 1984 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1436 |
| BsaI | GGTCTC | 2 cut(s) | 35, 1211 |
| BsaJI | CCNNGG | 5 cut(s) | 1982, 3225, 3311, 3338, 3595 |
| BsaWI | WCCGGW | 3 cut(s) | 1094, 2011, 3559 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1546, 1576, 2841, 2871, 3641, 3671 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1938, 3652 |
| Bse118I | RCCGGY | 1 cut(s) | 2011 |
| Bse1I | ACTGG | 4 cut(s) | 71, 2371, 2849, 2908 |
| Bse3DI | GCAATG | 3 cut(s) | 116, 424, 1816 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1436 |
| BseBI | CCWGG | 4 cut(s) | 2639, 3313, 3340, 3653 |
| BseDI | CCNNGG | 5 cut(s) | 1982, 3225, 3311, 3338, 3595 |
| BseGI | GGATG | 7 cut(s) | 492, 568, 1450, 2866, 3184, 3334, 3714 |
| BseJI | GATNNNNATC | 1 cut(s) | 1436 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1938, 3652 |
| BseMI | GCAATG | 3 cut(s) | 116, 424, 1816 |
| BseMII | CTCAG | 7 cut(s) | 522, 671, 684, 1988, 2072, 2955, 2999 |
| BseNI | ACTGG | 4 cut(s) | 71, 2371, 2849, 2908 |
| BseRI | GAGGAG | 2 cut(s) | 821, 1833 |
| BseXI | GCAGC | 9 cut(s) | 1387, 1793, 2041, 2677, 2731, 3292, 3597, 3698, 3709 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3464 |
| BshFI | GGCC | 4 cut(s) | 1692, 2040, 2208, 3594 |
| BshNI | GGYRCC | 1 cut(s) | 3642 |
| BshTI | ACCGGT | 1 cut(s) | 2011 |
| BsiEI | CGRYCG | 1 cut(s) | 3464 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2175, 2876 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1353, 1982 |
| BsiSI | CCGG | 4 cut(s) | 1095, 1983, 2012, 3560 |
| BslFI | GGGAC | 1 cut(s) | 2914 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1938, 3652 |
| BsmBI | CGTCTC | 1 cut(s) | 3516 |
| BsmFI | GGGAC | 1 cut(s) | 2914 |
| BsmI | GAATGC | 3 cut(s) | 230, 1640, 2730 |
| BsnI | GGCC | 4 cut(s) | 1692, 2040, 2208, 3594 |
| Bso31I | GGTCTC | 2 cut(s) | 35, 1211 |
| BsoBI | CYCGRG | 2 cut(s) | 1353, 1982 |
| Bsp119I | TTCGAA | 2 cut(s) | 1064, 3729 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2175, 2876 |
| Bsp19I | CCATGG | 1 cut(s) | 3595 |
| BspACI | CCGC | 2 cut(s) | 249, 1287 |
| BspANI | GGCC | 4 cut(s) | 1692, 2040, 2208, 3594 |
| BspCNI | CTCAG | 7 cut(s) | 521, 672, 685, 1987, 2071, 2956, 3000 |
| BspHI | TCATGA | 1 cut(s) | 1240 |
| BspLI | GGNNCC | 6 cut(s) | 170, 313, 1930, 2756, 3602, 3644 |
| BspMI | ACCTGC | 1 cut(s) | 2299 |
| BspOI | GCTAGC | 1 cut(s) | 1190 |
| BspPI | GGATC | 5 cut(s) | 259, 2749, 2762, 3595, 3608 |
| BspQI | GCTCTTC | 2 cut(s) | 2864, 3393 |
| BspT104I | TTCGAA | 2 cut(s) | 1064, 3729 |
| BspT107I | GGYRCC | 1 cut(s) | 3642 |
| BspTI | CTTAAG | 1 cut(s) | 2189 |
| BspTNI | GGTCTC | 2 cut(s) | 35, 1211 |
| BsrDI | GCAATG | 3 cut(s) | 116, 424, 1816 |
| BsrFI | RCCGGY | 1 cut(s) | 2011 |
| BsrI | ACTGG | 4 cut(s) | 71, 2371, 2849, 2908 |
| BssAI | RCCGGY | 1 cut(s) | 2011 |
| BssECI | CCNNGG | 5 cut(s) | 1982, 3225, 3311, 3338, 3595 |
| BssSI | CACGAG | 1 cut(s) | 1571 |
| BssT1I | CCWWGG | 2 cut(s) | 3225, 3595 |
| Bst2BI | CACGAG | 1 cut(s) | 1571 |
| Bst2UI | CCWGG | 4 cut(s) | 2639, 3313, 3340, 3653 |
| Bst4CI | ACNGT | 6 cut(s) | 928, 1252, 3408, 3497, 3517, 3569 |
| Bst6I | CTCTTC | 9 cut(s) | 622, 1043, 1209, 1390, 1589, 1786, 2118, 2864, 3393 |
| BstAFI | CTTAAG | 1 cut(s) | 2189 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1477, 1747 |
| BstBI | TTCGAA | 2 cut(s) | 1064, 3729 |
| BstC8I | GCNNGC | 6 cut(s) | 107, 770, 1188, 2552, 2695, 3741 |
| BstDSI | CCRYGG | 1 cut(s) | 3595 |
| BstF5I | GGATG | 7 cut(s) | 492, 568, 1450, 2866, 3184, 3334, 3714 |
| BstMCI | CGRYCG | 1 cut(s) | 3464 |
| BstNI | CCWGG | 4 cut(s) | 2639, 3313, 3340, 3653 |
| BstNSI | RCATGY | 2 cut(s) | 2443, 3446 |
| BstSCI | CCNGG | 6 cut(s) | 1981, 1982, 2637, 3311, 3338, 3651 |
| BstSFI | CTRYAG | 2 cut(s) | 580, 1291 |
| BstV1I | GCAGC | 9 cut(s) | 1387, 1793, 2041, 2677, 2731, 3292, 3597, 3698, 3709 |
| BstV2I | GAAGAC | 2 cut(s) | 1035, 3171 |
| BstX2I | RGATCY | 3 cut(s) | 251, 2754, 3600 |
| BstYI | RGATCY | 3 cut(s) | 251, 2754, 3600 |
| BsuI | GTATCC | 1 cut(s) | 1766 |
| BsuRI | GGCC | 4 cut(s) | 1692, 2040, 2208, 3594 |
| BtgI | CCRYGG | 1 cut(s) | 3595 |
| BtsCI | GGATG | 7 cut(s) | 492, 568, 1450, 2866, 3184, 3334, 3714 |
| BtsIMutI | CAGTG | 3 cut(s) | 933, 3493, 3574 |
| BveI | ACCTGC | 1 cut(s) | 2299 |
| Cac8I | GCNNGC | 6 cut(s) | 107, 770, 1188, 2552, 2695, 3741 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1290, 2963 |
| CciI | TCATGA | 1 cut(s) | 1240 |
| Cfr10I | RCCGGY | 1 cut(s) | 2011 |
| Cfr13I | GGNCC | 2 cut(s) | 3358, 3500 |
| Cfr9I | CCCGGG | 1 cut(s) | 1982 |
| Csp6I | GTAC | 7 cut(s) | 407, 1167, 1401, 2775, 3348, 3409, 3643 |
| CspAI | ACCGGT | 1 cut(s) | 2011 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 332, 367, 402, 437, 2984, 3019 |
| CviQI | GTAC | 7 cut(s) | 407, 1167, 1401, 2775, 3348, 3409, 3643 |
| DraIII | CACNNNGTG | 1 cut(s) | 2179 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3073 |
| EaeI | YGGCCR | 2 cut(s) | 1690, 3592 |
| Eam1104I | CTCTTC | 9 cut(s) | 622, 1043, 1209, 1390, 1589, 1786, 2118, 2864, 3393 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3073 |
| EarI | CTCTTC | 9 cut(s) | 622, 1043, 1209, 1390, 1589, 1786, 2118, 2864, 3393 |
| Eco130I | CCWWGG | 2 cut(s) | 3225, 3595 |
| Eco147I | AGGCCT | 1 cut(s) | 2040 |
| Eco31I | GGTCTC | 2 cut(s) | 35, 1211 |
| Eco32I | GATATC | 2 cut(s) | 2326, 3217 |
| Eco47I | GGWCC | 2 cut(s) | 3358, 3500 |
| Eco57I | CTGAAG | 2 cut(s) | 261, 3155 |
| Eco88I | CYCGRG | 2 cut(s) | 1353, 1982 |
| EcoRII | CCWGG | 4 cut(s) | 2637, 3311, 3338, 3651 |
| EcoRV | GATATC | 2 cut(s) | 2326, 3217 |
| EcoT14I | CCWWGG | 2 cut(s) | 3225, 3595 |
| ErhI | CCWWGG | 2 cut(s) | 3225, 3595 |
| Esp3I | CGTCTC | 1 cut(s) | 3516 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 238, 270, 2763, 2795 |
| FaqI | GGGAC | 1 cut(s) | 2914 |
| FauNDI | CATATG | 2 cut(s) | 1152, 1302 |
| FblI | GTMKAC | 2 cut(s) | 579, 3186 |
| FokI | GGATG | 7 cut(s) | 479, 575, 1457, 2873, 3191, 3321, 3701 |
| GsuI | CTGGAG | 2 cut(s) | 377, 590 |
| HaeIII | GGCC | 4 cut(s) | 1692, 2040, 2208, 3594 |
| HapII | CCGG | 4 cut(s) | 1095, 1983, 2012, 3560 |
| HincII | GTYRAC | 4 cut(s) | 825, 1336, 1565, 2137 |
| HindII | GTYRAC | 4 cut(s) | 825, 1336, 1565, 2137 |
| HindIII | AAGCTT | 3 cut(s) | 480, 2186, 2695 |
| HpaII | CCGG | 4 cut(s) | 1095, 1983, 2012, 3560 |
| HphI | GGTGA | 8 cut(s) | 734, 1109, 1796, 2621, 3044, 3214, 3505, 3622 |
| HpyAV | CCTTC | 8 cut(s) | 158, 448, 1004, 1775, 1796, 2056, 2188, 2306 |
| HpyCH4III | ACNGT | 6 cut(s) | 928, 1252, 3408, 3497, 3517, 3569 |
| KpnI | GGTACC | 1 cut(s) | 3646 |
| LguI | GCTCTTC | 2 cut(s) | 2864, 3393 |
| LmnI | GCTCC | 4 cut(s) | 311, 358, 2224, 2741 |
| Lsp1109I | GCAGC | 9 cut(s) | 1387, 1793, 2041, 2677, 2731, 3292, 3597, 3698, 3709 |
| LweI | GCATC | 6 cut(s) | 463, 2602, 2930, 3148, 3340, 3723 |
| MaeIII | GTNAC | 4 cut(s) | 1079, 2840, 3065, 3208 |
| MfeI | CAATTG | 2 cut(s) | 1617, 2982 |
| MflI | RGATCY | 3 cut(s) | 251, 2754, 3600 |
| MhlI | GDGCHC | 2 cut(s) | 2175, 2876 |
| MlsI | TGGCCA | 2 cut(s) | 1692, 3594 |
| MluNI | TGGCCA | 2 cut(s) | 1692, 3594 |
| MlyI | GAGTC | 4 cut(s) | 430, 2121, 2240, 3650 |
| MmeI | TCCRAC | 3 cut(s) | 3369, 3499, 3684 |
| Mox20I | TGGCCA | 2 cut(s) | 1692, 3594 |
| MroXI | GAANNNNTTC | 2 cut(s) | 519, 2586 |
| MscI | TGGCCA | 2 cut(s) | 1692, 3594 |
| MseI | TTAA | 8 cut(s) | 77, 279, 390, 702, 2160, 2190, 2811, 3291 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1095, 1889, 3447 |
| Msp20I | TGGCCA | 2 cut(s) | 1692, 3594 |
| MspA1I | CMGCKG | 1 cut(s) | 1287 |
| MspCI | CTTAAG | 1 cut(s) | 2189 |
| MspI | CCGG | 4 cut(s) | 1095, 1983, 2012, 3560 |
| MspR9I | CCNGG | 6 cut(s) | 1983, 1984, 2639, 3313, 3340, 3653 |
| MunI | CAATTG | 2 cut(s) | 1617, 2982 |
| Mva1269I | GAATGC | 3 cut(s) | 230, 1640, 2730 |
| MvaI | CCWGG | 4 cut(s) | 2639, 3313, 3340, 3653 |
| NciI | CCSGG | 2 cut(s) | 1983, 1984 |
| NcoI | CCATGG | 1 cut(s) | 3595 |
| NdeI | CATATG | 2 cut(s) | 1152, 1302 |
| NheI | GCTAGC | 1 cut(s) | 1186 |
| NlaIV | GGNNCC | 6 cut(s) | 170, 313, 1930, 2756, 3602, 3644 |
| NmeAIII | GCCGAG | 1 cut(s) | 1776 |
| NmuCI | GTSAC | 3 cut(s) | 1079, 2840, 3065 |
| NspI | RCATGY | 2 cut(s) | 2443, 3446 |
| NspV | TTCGAA | 2 cut(s) | 1064, 3729 |
| PagI | TCATGA | 1 cut(s) | 1240 |
| PceI | AGGCCT | 1 cut(s) | 2040 |
| PciI | ACATGT | 1 cut(s) | 3442 |
| PciSI | GCTCTTC | 2 cut(s) | 2864, 3393 |
| PctI | GAATGC | 3 cut(s) | 230, 1640, 2730 |
| PdmI | GAANNNNTTC | 2 cut(s) | 519, 2586 |
| PinAI | ACCGGT | 1 cut(s) | 2011 |
| Ple19I | CGATCG | 1 cut(s) | 3464 |
| PleI | GAGTC | 4 cut(s) | 430, 2120, 2240, 3650 |
| PpsI | GAGTC | 4 cut(s) | 430, 2120, 2240, 3650 |
| PscI | ACATGT | 1 cut(s) | 3442 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| PsiI | TTATAA | 1 cut(s) | 1905 |
| Psp6I | CCWGG | 4 cut(s) | 2637, 3311, 3338, 3651 |
| PspGI | CCWGG | 4 cut(s) | 2637, 3311, 3338, 3651 |
| PspN4I | GGNNCC | 6 cut(s) | 170, 313, 1930, 2756, 3602, 3644 |
| PspPI | GGNCC | 2 cut(s) | 3358, 3500 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1290, 2963 |
| PsuI | RGATCY | 3 cut(s) | 251, 2754, 3600 |
| PvuI | CGATCG | 1 cut(s) | 3464 |
| RsaI | GTAC | 7 cut(s) | 408, 1168, 1402, 2776, 3349, 3410, 3644 |
| RsaNI | GTAC | 7 cut(s) | 407, 1167, 1401, 2775, 3348, 3409, 3643 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1095, 1889, 3447 |
| SapI | GCTCTTC | 2 cut(s) | 2864, 3393 |
| SaqAI | TTAA | 8 cut(s) | 77, 279, 390, 702, 2160, 2190, 2811, 3291 |
| Sau96I | GGNCC | 2 cut(s) | 3358, 3500 |
| SchI | GAGTC | 4 cut(s) | 430, 2121, 2240, 3650 |
| ScrFI | CCNGG | 6 cut(s) | 1983, 1984, 2639, 3313, 3340, 3653 |
| SduI | GDGCHC | 2 cut(s) | 2175, 2876 |
| SfaNI | GCATC | 6 cut(s) | 463, 2602, 2930, 3148, 3340, 3723 |
| SfcI | CTRYAG | 2 cut(s) | 580, 1291 |
| SfuI | TTCGAA | 2 cut(s) | 1064, 3729 |
| SinI | GGWCC | 2 cut(s) | 3358, 3500 |
| SmaI | CCCGGG | 1 cut(s) | 1984 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1095, 1889, 3447 |
| SmlI | CTYRAG | 6 cut(s) | 942, 1712, 2145, 2189, 2994, 3605 |
| SmoI | CTYRAG | 6 cut(s) | 942, 1712, 2145, 2189, 2994, 3605 |
| SpeI | ACTAGT | 1 cut(s) | 1856 |
| SseBI | AGGCCT | 1 cut(s) | 2040 |
| SsiI | CCGC | 2 cut(s) | 249, 1287 |
| StuI | AGGCCT | 1 cut(s) | 2040 |
| StyD4I | CCNGG | 6 cut(s) | 1981, 1982, 2637, 3311, 3338, 3651 |
| StyI | CCWWGG | 2 cut(s) | 3225, 3595 |
| TaaI | ACNGT | 6 cut(s) | 928, 1252, 3408, 3497, 3517, 3569 |
| TaqI | TCGA | 7 cut(s) | 55, 1064, 1383, 2244, 3464, 3469, 3729 |
| TatI | WGTACW | 1 cut(s) | 3408 |
| TauI | GCSGC | 1 cut(s) | 1290 |
| Tru1I | TTAA | 8 cut(s) | 77, 279, 390, 702, 2160, 2190, 2811, 3291 |
| Tru9I | TTAA | 8 cut(s) | 77, 279, 390, 702, 2160, 2190, 2811, 3291 |
| TscAI | CASTG | 3 cut(s) | 933, 3500, 3574 |
| TseFI | GTSAC | 3 cut(s) | 1079, 2840, 3065 |
| TseI | GCWGC | 9 cut(s) | 1375, 1806, 2054, 2690, 2744, 3280, 3585, 3697, 3711 |
| Tsp45I | GTSAC | 3 cut(s) | 1079, 2840, 3065 |
| TspGWI | ACGGA | 2 cut(s) | 1921, 2038 |
| TspMI | CCCGGG | 1 cut(s) | 1982 |
| TspRI | CASTG | 3 cut(s) | 933, 3500, 3574 |
| Vha464I | CTTAAG | 1 cut(s) | 2189 |
| VpaK11BI | GGWCC | 2 cut(s) | 3358, 3500 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XapI | RAATTY | 8 cut(s) | 4, 516, 1074, 1142, 1474, 1699, 2392, 3681 |
| XbaI | TCTAGA | 1 cut(s) | 2524 |
| XceI | RCATGY | 2 cut(s) | 2443, 3446 |
| XmaI | CCCGGG | 1 cut(s) | 1982 |
| XmiI | GTMKAC | 2 cut(s) | 579, 3186 |
| XmnI | GAANNNNTTC | 2 cut(s) | 519, 2586 |