FvH4_6g43842

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
33880646 .. 33884040
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43842.t1

Sequence Viewer

Length: 3198 bp
ATGTCATTTGTTGAGTTGCATGAGATGAAGCGGAAAGATGCGTGGTTCCTCGACTCAGGATGCTCTAATCATATGTGTGGGGATCGAGGTATGTTTGCCAATTTAGATGGGAGTTTTCAACATTCTGTTAAATTGGGAAATAATAGCAGAATGGGTGTAGCTGGAAAAGGAAGTGTGAGGTTATTGTTGAATGGAGTGAGTCATGTTGTCAGTGAAGTGTACTATGTTCCAGAGCTTAAAAACAATCTCTTGAGCATAGGACAACTTCAAGAGAAGGGTTTGGCAATATTGATTCAAGGAGGGGTTTGTAAAATTTATCATCCGGAGAGGGGTTTGATAATTCAAACAGTAATGAGTGCAAATAGAATGTTTATTTTGTTAGCTCAGACACAAGGTGTTTCAGATGTTCAAAGATGCCTTCATACAAGCTCTCAAGATCTCTCCCATCTTTGGCATCGACGTTATGGACACTTGAGCTACAAGGGGTTGAGAACTTTGCAATTCAAGAAGATGGTTCGTGGACTTCCTCAGTTTCAAGCCTCAGGTGTAACATGCACAGATTGCATTATTGGCAAACAACATAGAGATACAATACCAAAAAGAAGTATGTGGAGAGCAAATCAGCCCCTGGAGCTCATTCATGCAGACATATGTGGACCTATTTCACCTACGTCTAATAGTGGAAAGAGGTACACTTTATGTTTTATTGATGACTTTAGTCGTAAATCTTGGGTGTACATGTTGGTAGAGAAGAGTGAAGCACTGGATTGTTTCAAGCATTTTAAGAAGTCGGTGGAAAATGAGAAAGGCATGTTTGTTAAGTGTTTGAGGACATATAGAGGAGGTGAATTCACTTCAAATGAGTTCAATGACTTCTGCAAGAGGAATGGAATCAGGAGACAATTAACTGCTGCATATACGCCACAACAAAATGGCGTTGCTGAGAGGAAGAATCGAACTGTGATGAATATGGTTCGTTCCATGTTGTCAGACAAGAAGATGCAAAAGAGTTTCTGGCCGGAGGCAGTGAATTGGACTTTCTATGTTCTAAATAGATGTCCAACCTTGGCAGTAAAGGATGTTACACCACAAGAAGCATGGAGTGGAATAAAGCCCTCAGTTGAGCACTTTCGTATTTTTGGATGTCTTGCTCATGTTCACATTCCAGATAAAAAACGAGGTAAATTAGATGATAAAAGCTTTCCTTGTGTTTTACTTGGGGTTAGTGAGGAGACAAAGGGATATAGGTTATATGATCCTACTACTAAAAGGGTTGTTGTGAGTAGAGATGTGATTTTTGAGGAAGAAAAAGAATGGGATTGGGGTGAGAACTATCAGAAACAAATTTTATTAGACTTGGAGTGGGGAGAGAATGAAGAAAACAGTGAGAATGAAGAAGGAGCAAGTGAAAATGGAAATGAAGATAATAATGGTGAGAGGAGTGAGAATGAGGACAGTGAGGAAACACGGGGTGGAGCAGAAGAGAGTGAAGAAACTAGAGAAGTAGAAAATTCTGATGAGCTTGATGAAGGAAGAGACAGACATGCTCCAGATTGGATGAAGGATTATGTTAGTGGAGCTGGTTTAGGTTTAAGTGAAGATGAGAGGGGATCTGGTGAAGATGAAGTGCACATTGCACATGTATTAGCAGTTGAAGATCCTTGTTATTTTGAAGAAGCAGTGAAGGAACAGAAGTGGAAACAAGCTATGGATAGTGAGATTAACTCCATTGAGAAGAACAAGACATGGACTTTAACAGAGTTACCAGTTGGAACTAAGAAGATCGGAGTCAAATGGGTTTTCAAGACGAAGTTTAATGAGCATGGAGAGGTTGACAAATACAAGGCGCGGTTGGTAGCAAAAGGATACTCACAAAAACATGGCATAGATTATACAGAGGTGTTTGCACCAGTGGCAAGGTTAGACACAGTGAGGATGATCATTGCTTTGGCTGCGCAGAAAGGTTGGAAAATTAAGCAGCTAGATGTGAAGTCAGCTTTTCTTCATGGAGAATTGAGTGAAGATGTCTATGTTGAGCAACCAAAGGGGTATGAGAAGAAAGGAAAGGAGCATTTGGTCTACAAACTGCACAAAGCTTTGTACTGGTTAAAACAAGCTCCACGAGCTTGGTTCAGCAGAATCGAAGCGCATTTCATCAATGAAGGCTTCCATAAGTGTGAAAGTGAGCAAACCTTGTTCACAAAGAGGAGTAGTGCTGGTAAAATTATCATTGTAAGTGTCTATGTTGATGATTTAATCTTTACTGGTTATGATGATGTTATGATGTCTGAATTCAAGAGTTCCATGTTAAGAGAATTCGATATGTCTGACTTGGGAAGCATGAGGTTTTTTCTCGGCATTGAAGTGTTGCAGAGAGATGATGGTATTTTTATTTGTCAGCAAAAGTATGCATTAGAGGTTTTGAAAAGGTTTGGGATGTTGGAGAGCAACAAGGTGAATAATCCCATTGTCCCTGGTTTCAAAGTTAGCAAAGATGAAGATGGAATTACTGTGGATGAGACATATTTCAAGCAATTGGTGGGGAGCTTGATGTATCTTACTGCCACAAGACCAGACATGATGTATGTTACAAGTCTCTTAAGTAGATACATGGCGAAACCTACTGAGCTTCATCTACAAGCTGCAAAGAAAGCACTCCGGTATCTAAGAGGGACTGTGAGTTATGGAATTTACTACAAGAGAGGTGGGAATGATGAGCTTATTGCTTTTACAGATAGTGATTATGCAGGAGACATAGAAGATAGGAAGAGTACAAGTGGTTATGTGTTCTTGCTGAGTTGTGGTGCAGTGTCATGGGGTTTGAAAAAGCAGCCGATTGTAACTTTATCAACAACTGAGGCAGAATTTGTGGCAGCTGCAGTGTGTGCATGTCAAGCAATATGGATGAAAAGGGTGTTGAAGGAGCTTGGGCATAGTGATGAAGTTTGTACTCATATCAGGTGTGATAATAGCTCAACAATTAAACTTTCAAGGAATCCTGTGATGCATGGACGCAGCAAACACATAGATGTGAGGTATCACTTCTTAAGGAATCTCACAAAAGAAGGTTCAGTTGCATTAGTTCATTGTGGAAGTAATGATCAAGTAGCAGATGTAATGACCAAGCCTTTGAAGATTGATACTTTTCAGAAGCTTCGAGGATTGCTTGGAGTGTGCGACATTTCTGAGTTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1066

Amino Acids

121.32

Weight (kDa)

7.03

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 15 - 93 7.7e-27 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 138 - 193 5.8e-12 GAG-pre-integrase domain
rve PF00665 207 - 308 2.5e-13 Integrase core domain
SH3_retrovirus PF25597 382 - 444 2e-27 Retroviral polymerase SH3-like domain
RVT_2 PF07727 580 - 824 8.8e-82 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1956
AccI GTMKAC 1 cut(s) 2079
AccII CGCG 1 cut(s) 1849
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 2 cut(s) 31, 1849
AclWI GGATC 4 cut(s) 90, 1250, 1618, 1652
AcoI YGGCCR 1 cut(s) 1016
AcsI RAATTY 8 cut(s) 312, 848, 1344, 1510, 2291, 2315, 2688, 2864
AdeI CACNNNGTG 2 cut(s) 395, 1472
AfaI GTAC 6 cut(s) 221, 692, 737, 2102, 2773, 2950
AfiI CCNNNNNNNGG 2 cut(s) 329, 450
AflII CTTAAG 2 cut(s) 2599, 3046
AflIII ACRYGT 2 cut(s) 738, 1639
AjnI CCWGG 2 cut(s) 627, 2473
Alw21I GWGCWC 3 cut(s) 636, 1128, 1632
Alw26I GTCTC 6 cut(s) 892, 1226, 1530, 2513, 2600, 2745
Alw44I GTGCAC 1 cut(s) 1628
AlwI GGATC 4 cut(s) 90, 1250, 1618, 1652
AlwNI CAGNNNCTG 1 cut(s) 628
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 1016
ApaLI GTGCAC 1 cut(s) 1628
ApeKI GCWGC 8 cut(s) 911, 1952, 1978, 2642, 2830, 2873, 2876, 3015
ApoI RAATTY 8 cut(s) 312, 848, 1344, 1510, 2291, 2315, 2688, 2864
ArsI GACNNNNNNTTYG 2 cut(s) 3112, 3144
AspLEI GCGC 3 cut(s) 1849, 1957, 2149
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 6 cut(s) 657, 857, 1337, 1445, 1628, 2467
AvaII GGWCC 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 1632
BaeI ACNNNNGTAYC 2 cut(s) 2645, 2678
BanII GRGCYC 1 cut(s) 636
BauI CACGAG 1 cut(s) 2121
Bbv12I GWGCWC 3 cut(s) 636, 1128, 1632
BbvI GCAGC 8 cut(s) 898, 1939, 1990, 2629, 2842, 2863, 2885, 3027
BccI CCATC 5 cut(s) 101, 453, 505, 2375, 2495
BciT130I CCWGG 2 cut(s) 629, 2475
BciVI GTATCC 1 cut(s) 1859
BclI TGATCA 2 cut(s) 1938, 3100
BcoDI GTCTC 6 cut(s) 892, 1226, 1530, 2513, 2600, 2745
BfaI CTAG 2 cut(s) 1497, 1982
BfmI CTRYAG 1 cut(s) 2877
BfrI CTTAAG 2 cut(s) 2599, 3046
BfuI GTATCC 1 cut(s) 1859
BglII AGATCT 1 cut(s) 436
BisI GCNGC 8 cut(s) 912, 1953, 1979, 2643, 2831, 2874, 2877, 3016
BlsI GCNGC 8 cut(s) 913, 1954, 1980, 2644, 2832, 2875, 2878, 3017
Bme1390I CCNGG 2 cut(s) 629, 2475
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 629, 2475
BmsI GCATC 6 cut(s) 28, 50, 404, 463, 990, 2994
BoxI GACNNNNGTC 1 cut(s) 717
BplI GAGNNNNNCTC 2 cut(s) 1709, 1741
BpmI CTGGAG 2 cut(s) 650, 1533
BpuEI CTTGAG 3 cut(s) 271, 417, 493
BsaJI CCNNGG 3 cut(s) 627, 1065, 2473
BsaWI WCCGGW 2 cut(s) 322, 2658
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 450
Bse1I ACTGG 5 cut(s) 768, 1766, 1910, 2108, 2269
Bse21I CCTNAGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 1632, 1941
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 629, 2475
BseDI CCNNGG 3 cut(s) 627, 1065, 2473
BseGI GGATG 9 cut(s) 65, 319, 1084, 1148, 1563, 1941, 2442, 2521, 2910
BseLI CCNNNNNNNGG 2 cut(s) 329, 450
BseMI GCAATG 2 cut(s) 1632, 1941
BseNI ACTGG 5 cut(s) 768, 1766, 1910, 2108, 2269
BseRI GAGGAG 4 cut(s) 855, 1244, 1453, 2221
BseSI GKGCMC 1 cut(s) 1632
BseXI GCAGC 8 cut(s) 898, 1939, 1990, 2629, 2842, 2863, 2885, 3027
BsgI GTGCAG 2 cut(s) 2072, 2826
Bsh1236I CGCG 1 cut(s) 1849
BshFI GGCC 1 cut(s) 1018
BsiHKAI GWGCWC 3 cut(s) 636, 1128, 1632
BsiSI CCGG 3 cut(s) 323, 1019, 2659
BslFI GGGAC 2 cut(s) 2456, 2686
BslI CCNNNNNNNGG 2 cut(s) 329, 450
BsmAI GTCTC 6 cut(s) 892, 1226, 1530, 2513, 2600, 2745
BsmFI GGGAC 2 cut(s) 2456, 2686
BsnI GGCC 1 cut(s) 1018
Bsp1286I GDGCHC 3 cut(s) 636, 1128, 1632
Bsp13I TCCGGA 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
BspACI CCGC 2 cut(s) 31, 1849
BspANI GGCC 1 cut(s) 1018
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 1 cut(s) 1849
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 2881
BspPI GGATC 4 cut(s) 90, 1250, 1618, 1652
BspTI CTTAAG 2 cut(s) 2599, 3046
BsrDI GCAATG 2 cut(s) 1632, 1941
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 5 cut(s) 768, 1766, 1910, 2108, 2269
BssECI CCNNGG 3 cut(s) 627, 1065, 2473
BssMI GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
BssSI CACGAG 1 cut(s) 2121
BssT1I CCWWGG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 2121
Bst2UI CCWGG 2 cut(s) 629, 2475
Bst4CI ACNGT 7 cut(s) 349, 961, 1385, 1457, 1930, 2512, 2677
Bst6I CTCTTC 4 cut(s) 746, 1476, 1528, 2762
BstAFI CTTAAG 2 cut(s) 2599, 3046
BstAPI GCANNNNNTGC 2 cut(s) 561, 2885
BstAUI TGTACA 1 cut(s) 735
BstF5I GGATG 9 cut(s) 65, 319, 1084, 1148, 1563, 1941, 2442, 2521, 2910
BstFNI CGCG 1 cut(s) 1849
BstHHI GCGC 3 cut(s) 1849, 1957, 2149
BstKTI GATC 8 cut(s) 85, 439, 1258, 1613, 1660, 1785, 1941, 3103
BstMAI GTCTC 6 cut(s) 892, 1226, 1530, 2513, 2600, 2745
BstMBI GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
BstMWI GCNNNNNNNGC 9 cut(s) 561, 570, 631, 1913, 1952, 2123, 2651, 2885, 2894
BstNI CCWGG 2 cut(s) 629, 2475
BstNSI RCATGY 6 cut(s) 555, 742, 814, 1547, 1643, 2892
BstPAI GACNNNNGTC 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 627, 2473
BstSFI CTRYAG 1 cut(s) 2877
BstSLI GKGCMC 1 cut(s) 1632
BstUI CGCG 1 cut(s) 1849
BstV1I GCAGC 8 cut(s) 898, 1939, 1990, 2629, 2842, 2863, 2885, 3027
BstX2I RGATCY 3 cut(s) 436, 1610, 1657
BstXI CCANNNNNNTGG 1 cut(s) 2127
BstYI RGATCY 3 cut(s) 436, 1610, 1657
Bsu36I CCTNAGG 1 cut(s) 541
BsuI GTATCC 1 cut(s) 1859
BsuRI GGCC 1 cut(s) 1018
BtsCI GGATG 9 cut(s) 65, 319, 1084, 1148, 1563, 1941, 2442, 2521, 2910
BtsI GCAGTG 4 cut(s) 1032, 1686, 2814, 2886
CaiI CAGNNNCTG 1 cut(s) 628
CfoI GCGC 3 cut(s) 1849, 1957, 2149
Cfr13I GGNCC 1 cut(s) 656
CseI GACGC 1 cut(s) 3021
Csp6I GTAC 6 cut(s) 220, 691, 736, 2101, 2772, 2949
CspCI CAANNNNNGTGG 2 cut(s) 2686, 2721
CviQI GTAC 6 cut(s) 220, 691, 736, 2101, 2772, 2949
DpnI GATC 8 cut(s) 84, 438, 1257, 1612, 1659, 1784, 1940, 3102
DpnII GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
DraIII CACNNNGTG 2 cut(s) 395, 1472
EaeI YGGCCR 1 cut(s) 1016
Eam1104I CTCTTC 4 cut(s) 746, 1476, 1528, 2762
EarI CTCTTC 4 cut(s) 746, 1476, 1528, 2762
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 634
Eco81I CCTNAGG 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 634
EcoRI GAATTC 3 cut(s) 848, 2291, 2315
EcoRII CCWGG 2 cut(s) 627, 2473
EcoT14I CCWWGG 1 cut(s) 1065
EcoT22I ATGCAT 2 cut(s) 2413, 3009
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 1065
FalI AAGNNNNNCTT 2 cut(s) 1189, 1221
FaqI GGGAC 2 cut(s) 2456, 2686
FauNDI CATATG 2 cut(s) 72, 650
FbaI TGATCA 2 cut(s) 1938, 3100
FblI GTMKAC 1 cut(s) 2079
Fnu4HI GCNGC 8 cut(s) 912, 1953, 1979, 2643, 2831, 2874, 2877, 3016
FokI GGATG 9 cut(s) 72, 306, 1091, 1155, 1570, 1948, 2449, 2528, 2917
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 8 cut(s) 912, 1953, 1979, 2643, 2831, 2874, 2877, 3016
FspBI CTAG 2 cut(s) 1497, 1982
FspI TGCGCA 1 cut(s) 1956
GlaI GCGC 3 cut(s) 1848, 1956, 2148
GluI GCNGC 8 cut(s) 912, 1953, 1979, 2643, 2831, 2874, 2877, 3016
GsuI CTGGAG 2 cut(s) 650, 1533
HaeIII GGCC 1 cut(s) 1018
HapII CCGG 3 cut(s) 323, 1019, 2659
HgaI GACGC 1 cut(s) 3021
HhaI GCGC 3 cut(s) 1849, 1957, 2149
Hin6I GCGC 3 cut(s) 1847, 1955, 2147
HinP1I GCGC 3 cut(s) 1847, 1955, 2147
HincII GTYRAC 1 cut(s) 1834
HindII GTYRAC 1 cut(s) 1834
HindIII AAGCTT 3 cut(s) 1198, 2094, 3152
HinfI GANTC 9 cut(s) 53, 199, 292, 891, 952, 1788, 2139, 2995, 3052
HpaII CCGG 3 cut(s) 323, 1019, 2659
HphI GGTGA 6 cut(s) 657, 857, 1337, 1445, 1628, 2467
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 9 cut(s) 268, 428, 1391, 1523, 1555, 1678, 2156, 2914, 3059
HpyCH4III ACNGT 7 cut(s) 349, 961, 1385, 1457, 1930, 2512, 2677
HpyCH4IV ACGT 2 cut(s) 460, 671
HpyF10VI GCNNNNNNNGC 9 cut(s) 561, 570, 631, 1913, 1952, 2123, 2651, 2885, 2894
HpySE526I ACGT 2 cut(s) 460, 671
HspAI GCGC 3 cut(s) 1847, 1955, 2147
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 2 cut(s) 1938, 3100
Kzo9I GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
LmnI GCTCC 9 cut(s) 631, 1400, 1475, 1552, 1577, 2068, 2122, 2544, 2923
Lsp1109I GCAGC 8 cut(s) 898, 1939, 1990, 2629, 2842, 2863, 2885, 3027
LweI GCATC 6 cut(s) 28, 50, 404, 463, 990, 2994
MaeI CTAG 2 cut(s) 1497, 1982
MaeII ACGT 2 cut(s) 460, 671
MaeIII GTNAC 5 cut(s) 547, 1081, 1761, 2587, 2839
MalI GATC 8 cut(s) 84, 438, 1257, 1612, 1659, 1784, 1940, 3102
MboI GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
MfeI CAATTG 1 cut(s) 2534
MflI RGATCY 3 cut(s) 436, 1610, 1657
MhlI GDGCHC 3 cut(s) 636, 1128, 1632
MlyI GAGTC 3 cut(s) 47, 208, 1797
MmeI TCCRAC 4 cut(s) 1085, 1750, 1946, 2421
Mph1103I ATGCAT 2 cut(s) 2413, 3009
MroI TCCGGA 1 cut(s) 322
MslI CAYNNNNRTG 6 cut(s) 75, 2175, 2363, 2937, 3027, 3029
MspA1I CMGCKG 1 cut(s) 2876
MspCI CTTAAG 2 cut(s) 2599, 3046
MspI CCGG 3 cut(s) 323, 1019, 2659
MspR9I CCNGG 2 cut(s) 629, 2475
MunI CAATTG 1 cut(s) 2534
MvaI CCWGG 2 cut(s) 629, 2475
MvnI CGCG 1 cut(s) 1849
MwoI GCNNNNNNNGC 9 cut(s) 561, 570, 631, 1913, 1952, 2123, 2651, 2885, 2894
NdeI CATATG 2 cut(s) 72, 650
NdeII GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
NlaIV GGNNCC 1 cut(s) 47
NmeAIII GCCGAG 1 cut(s) 2334
NsbI TGCGCA 1 cut(s) 1956
NsiI ATGCAT 2 cut(s) 2413, 3009
NspI RCATGY 6 cut(s) 555, 742, 814, 1547, 1643, 2892
PciI ACATGT 2 cut(s) 738, 1639
PfeI GAWTC 6 cut(s) 292, 891, 952, 2139, 2995, 3052
PkrI GCNGC 8 cut(s) 913, 1954, 1980, 2644, 2832, 2875, 2878, 3017
PleI GAGTC 3 cut(s) 47, 207, 1796
PpsI GAGTC 3 cut(s) 47, 207, 1796
PscI ACATGT 2 cut(s) 738, 1639
PshAI GACNNNNGTC 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 627, 2473
PspGI CCWGG 2 cut(s) 627, 2473
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 2881
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 3 cut(s) 436, 1610, 1657
PvuII CAGCTG 1 cut(s) 2876
RsaI GTAC 6 cut(s) 221, 692, 737, 2102, 2773, 2950
RsaNI GTAC 6 cut(s) 220, 691, 736, 2101, 2772, 2949
RseI CAYNNNNRTG 6 cut(s) 75, 2175, 2363, 2937, 3027, 3029
SacI GAGCTC 1 cut(s) 636
SatI GCNGC 8 cut(s) 912, 1953, 1979, 2643, 2831, 2874, 2877, 3016
Sau3AI GATC 8 cut(s) 82, 436, 1255, 1610, 1657, 1782, 1938, 3100
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 3 cut(s) 47, 208, 1797
ScrFI CCNGG 2 cut(s) 629, 2475
SduI GDGCHC 3 cut(s) 636, 1128, 1632
SfaNI GCATC 6 cut(s) 28, 50, 404, 463, 990, 2994
SfcI CTRYAG 1 cut(s) 2877
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 6 cut(s) 75, 2175, 2363, 2937, 3027, 3029
SmlI CTYRAG 5 cut(s) 250, 432, 472, 2599, 3046
SmoI CTYRAG 5 cut(s) 250, 432, 472, 2599, 3046
SsiI CCGC 2 cut(s) 31, 1849
SspI AATATT 1 cut(s) 288
SspMI CTAG 2 cut(s) 1497, 1982
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 2 cut(s) 627, 2473
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 7 cut(s) 349, 961, 1385, 1457, 1930, 2512, 2677
TaiI ACGT 2 cut(s) 463, 674
TaqI TCGA 7 cut(s) 51, 85, 457, 955, 2142, 2319, 3157
TatI WGTACW 5 cut(s) 219, 735, 2100, 2771, 2948
TfiI GAWTC 6 cut(s) 292, 891, 952, 2139, 2995, 3052
TseI GCWGC 8 cut(s) 911, 1952, 1978, 2642, 2830, 2873, 2876, 3015
Vha464I CTTAAG 2 cut(s) 2599, 3046
VneI GTGCAC 1 cut(s) 1628
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 8 cut(s) 312, 848, 1344, 1510, 2291, 2315, 2688, 2864
XceI RCATGY 6 cut(s) 555, 742, 814, 1547, 1643, 2892
XcmI CCANNNNNNNNNTGG 1 cut(s) 1095
XmiI GTMKAC 1 cut(s) 2079
XspI CTAG 2 cut(s) 1497, 1982
Zsp2I ATGCAT 2 cut(s) 2413, 3009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.