Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 106 - 184 | 1.4e-29 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 583 |
| AciI | CCGC | 2 cut(s) | 351, 428 |
| AcoI | YGGCCR | 1 cut(s) | 555 |
| AdeI | CACNNNGTG | 1 cut(s) | 400 |
| AfaI | GTAC | 3 cut(s) | 469, 648, 666 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AgsI | TTSAA | 3 cut(s) | 164, 181, 569 |
| AluBI | AGCT | 5 cut(s) | 115, 126, 406, 538, 674 |
| AluI | AGCT | 5 cut(s) | 115, 126, 406, 538, 674 |
| AoxI | GGCC | 1 cut(s) | 555 |
| ApeKI | GCWGC | 4 cut(s) | 123, 454, 535, 538 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AsuC2I | CCSGG | 1 cut(s) | 331 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| AvaII | GGWCC | 1 cut(s) | 36 |
| BalI | TGGCCA | 1 cut(s) | 557 |
| BbvI | GCAGC | 4 cut(s) | 135, 441, 525, 547 |
| BccI | CCATC | 2 cut(s) | 600, 685 |
| BcnI | CCSGG | 1 cut(s) | 331 |
| BisI | GCNGC | 4 cut(s) | 124, 455, 536, 539 |
| BlsI | GCNGC | 4 cut(s) | 125, 456, 537, 540 |
| Bme1390I | CCNGG | 1 cut(s) | 331 |
| Bme18I | GGWCC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmrFI | CCNGG | 1 cut(s) | 331 |
| BmsI | GCATC | 2 cut(s) | 87, 255 |
| BpuEI | CTTGAG | 2 cut(s) | 52, 403 |
| BpuMI | CCSGG | 1 cut(s) | 331 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaAI | YACGTR | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| Bse1I | ACTGG | 2 cut(s) | 135, 672 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseGI | GGATG | 3 cut(s) | 153, 592, 630 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseMII | CTCAG | 1 cut(s) | 411 |
| BseNI | ACTGG | 2 cut(s) | 135, 672 |
| BseRI | GAGGAG | 2 cut(s) | 272, 275 |
| BseXI | GCAGC | 4 cut(s) | 135, 441, 525, 547 |
| Bsh1285I | CGRYCG | 1 cut(s) | 108 |
| BshFI | GGCC | 1 cut(s) | 557 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiEI | CGRYCG | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 330 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 557 |
| Bsp143I | GATC | 2 cut(s) | 15, 105 |
| BspACI | CCGC | 2 cut(s) | 351, 428 |
| BspANI | GGCC | 1 cut(s) | 557 |
| BspCNI | CTCAG | 1 cut(s) | 410 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspHI | TCATGA | 1 cut(s) | 136 |
| BsrI | ACTGG | 2 cut(s) | 135, 672 |
| BssMI | GATC | 2 cut(s) | 15, 105 |
| Bst4CI | ACNGT | 2 cut(s) | 232, 363 |
| Bst6I | CTCTTC | 3 cut(s) | 241, 378, 433 |
| BstBAI | YACGTR | 1 cut(s) | 189 |
| BstDEI | CTNAG | 2 cut(s) | 91, 397 |
| BstF5I | GGATG | 3 cut(s) | 153, 592, 630 |
| BstKTI | GATC | 2 cut(s) | 18, 108 |
| BstMBI | GATC | 2 cut(s) | 15, 105 |
| BstMCI | CGRYCG | 1 cut(s) | 108 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 613 |
| BstSCI | CCNGG | 1 cut(s) | 329 |
| BstSNI | TACGTA | 1 cut(s) | 189 |
| BstV1I | GCAGC | 4 cut(s) | 135, 441, 525, 547 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| BsuRI | GGCC | 1 cut(s) | 557 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtsCI | GGATG | 3 cut(s) | 153, 592, 630 |
| BtsIMutI | CAGTG | 4 cut(s) | 368, 405, 469, 696 |
| CciI | TCATGA | 1 cut(s) | 136 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| Csp6I | GTAC | 3 cut(s) | 468, 647, 665 |
| CviAII | CATG | 3 cut(s) | 40, 137, 158 |
| CviJI | RGCY | 8 cut(s) | 115, 126, 406, 454, 538, 557, 607, 674 |
| CviKI_1 | RGCY | 8 cut(s) | 115, 126, 406, 454, 538, 557, 607, 674 |
| CviQI | GTAC | 3 cut(s) | 468, 647, 665 |
| DdeI | CTNAG | 2 cut(s) | 91, 397 |
| DpnI | GATC | 2 cut(s) | 17, 107 |
| DpnII | GATC | 2 cut(s) | 15, 105 |
| DraI | TTTAAA | 1 cut(s) | 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 400 |
| EaeI | YGGCCR | 1 cut(s) | 555 |
| Eam1104I | CTCTTC | 3 cut(s) | 241, 378, 433 |
| EarI | CTCTTC | 3 cut(s) | 241, 378, 433 |
| Eco105I | TACGTA | 1 cut(s) | 189 |
| Eco47I | GGWCC | 1 cut(s) | 36 |
| FaeI | CATG | 3 cut(s) | 43, 140, 161 |
| FatI | CATG | 3 cut(s) | 39, 136, 157 |
| FauI | CCCGC | 1 cut(s) | 344 |
| FauNDI | CATATG | 1 cut(s) | 345 |
| FblI | GTMKAC | 1 cut(s) | 583 |
| Fnu4HI | GCNGC | 4 cut(s) | 124, 455, 536, 539 |
| FokI | GGATG | 3 cut(s) | 160, 579, 637 |
| Fsp4HI | GCNGC | 4 cut(s) | 124, 455, 536, 539 |
| GluI | GCNGC | 4 cut(s) | 124, 455, 536, 539 |
| HaeIII | GGCC | 1 cut(s) | 557 |
| HapII | CCGG | 1 cut(s) | 330 |
| Hin1II | CATG | 3 cut(s) | 43, 140, 161 |
| HinfI | GANTC | 5 cut(s) | 80, 287, 326, 565, 707 |
| HpaII | CCGG | 1 cut(s) | 330 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy166II | GTNNAC | 1 cut(s) | 584 |
| Hpy188I | TCNGA | 3 cut(s) | 392, 410, 564 |
| Hpy188III | TCNNGA | 5 cut(s) | 31, 137, 323, 377, 420 |
| Hpy8I | GTNNAC | 1 cut(s) | 584 |
| HpyAV | CCTTC | 2 cut(s) | 210, 595 |
| HpyCH4III | ACNGT | 2 cut(s) | 232, 363 |
| HpyCH4IV | ACGT | 2 cut(s) | 188, 620 |
| HpyCH4V | TGCA | 3 cut(s) | 457, 541, 616 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 613 |
| HpyF3I | CTNAG | 2 cut(s) | 91, 397 |
| HpySE526I | ACGT | 2 cut(s) | 188, 620 |
| Hsp92II | CATG | 3 cut(s) | 43, 140, 161 |
| Kzo9I | GATC | 2 cut(s) | 15, 105 |
| LmnI | GCTCC | 2 cut(s) | 273, 679 |
| LpnPI | CCDG | 6 cut(s) | 116, 343, 436, 461, 516, 653 |
| Lsp1109I | GCAGC | 4 cut(s) | 135, 441, 525, 547 |
| LweI | GCATC | 2 cut(s) | 87, 255 |
| MaeII | ACGT | 2 cut(s) | 188, 620 |
| MalI | GATC | 2 cut(s) | 17, 107 |
| MboI | GATC | 2 cut(s) | 15, 105 |
| MboII | GAAGA | 7 cut(s) | 176, 179, 193, 258, 395, 450, 713 |
| MlsI | TGGCCA | 1 cut(s) | 557 |
| MluCI | AATT | 2 cut(s) | 517, 609 |
| MluNI | TGGCCA | 1 cut(s) | 557 |
| MlyI | GAGTC | 1 cut(s) | 701 |
| MmeI | TCCRAC | 2 cut(s) | 108, 315 |
| Mox20I | TGGCCA | 1 cut(s) | 557 |
| MscI | TGGCCA | 1 cut(s) | 557 |
| MseI | TTAA | 1 cut(s) | 509 |
| Msp20I | TGGCCA | 1 cut(s) | 557 |
| MspA1I | CMGCKG | 1 cut(s) | 538 |
| MspI | CCGG | 1 cut(s) | 330 |
| MspR9I | CCNGG | 1 cut(s) | 331 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 613 |
| NciI | CCSGG | 1 cut(s) | 331 |
| NdeI | CATATG | 1 cut(s) | 345 |
| NdeII | GATC | 2 cut(s) | 15, 105 |
| NlaIII | CATG | 3 cut(s) | 43, 140, 161 |
| PagI | TCATGA | 1 cut(s) | 136 |
| PfeI | GAWTC | 4 cut(s) | 80, 287, 326, 565 |
| PkrI | GCNGC | 4 cut(s) | 125, 456, 537, 540 |
| Ple19I | CGATCG | 1 cut(s) | 108 |
| PleI | GAGTC | 1 cut(s) | 701 |
| PpsI | GAGTC | 1 cut(s) | 701 |
| Ppu21I | YACGTR | 1 cut(s) | 189 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PvuI | CGATCG | 1 cut(s) | 108 |
| PvuII | CAGCTG | 1 cut(s) | 538 |
| RsaI | GTAC | 3 cut(s) | 469, 648, 666 |
| RsaNI | GTAC | 3 cut(s) | 468, 647, 665 |
| SaqAI | TTAA | 1 cut(s) | 509 |
| SatI | GCNGC | 4 cut(s) | 124, 455, 536, 539 |
| Sau3AI | GATC | 2 cut(s) | 15, 105 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| SchI | GAGTC | 1 cut(s) | 701 |
| ScrFI | CCNGG | 1 cut(s) | 331 |
| SetI | ASST | 9 cut(s) | 38, 117, 128, 191, 408, 480, 540, 623, 676 |
| SfaNI | GCATC | 2 cut(s) | 87, 255 |
| SinI | GGWCC | 1 cut(s) | 36 |
| SmlI | CTYRAG | 2 cut(s) | 31, 418 |
| SmoI | CTYRAG | 2 cut(s) | 31, 418 |
| SnaBI | TACGTA | 1 cut(s) | 189 |
| Sse9I | AATT | 2 cut(s) | 517, 609 |
| SsiI | CCGC | 2 cut(s) | 351, 428 |
| StyD4I | CCNGG | 1 cut(s) | 329 |
| TaaI | ACNGT | 2 cut(s) | 232, 363 |
| TaiI | ACGT | 2 cut(s) | 191, 623 |
| TaqI | TCGA | 2 cut(s) | 108, 235 |
| TasI | AATT | 2 cut(s) | 517, 609 |
| TatI | WGTACW | 1 cut(s) | 646 |
| TfiI | GAWTC | 4 cut(s) | 80, 287, 326, 565 |
| Tru1I | TTAA | 1 cut(s) | 509 |
| Tru9I | TTAA | 1 cut(s) | 509 |
| TscAI | CASTG | 4 cut(s) | 368, 405, 469, 703 |
| TseI | GCWGC | 4 cut(s) | 123, 454, 535, 538 |
| TspDTI | ATGAA | 5 cut(s) | 125, 153, 164, 210, 396 |
| TspGWI | ACGGA | 1 cut(s) | 588 |
| TspRI | CASTG | 4 cut(s) | 368, 405, 469, 703 |
| VpaK11BI | GGWCC | 1 cut(s) | 36 |
| XmiI | GTMKAC | 1 cut(s) | 583 |