gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 631 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 355 |
| AcsI | RAATTY | 3 cut(s) | 89, 185, 539 |
| AdeI | CACNNNGTG | 1 cut(s) | 565 |
| AfaI | GTAC | 1 cut(s) | 76 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 355 |
| AflIII | ACRYGT | 1 cut(s) | 823 |
| AgsI | TTSAA | 5 cut(s) | 94, 116, 368, 676, 734 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 768 |
| AluBI | AGCT | 5 cut(s) | 11, 571, 619, 743, 830 |
| AluI | AGCT | 5 cut(s) | 11, 571, 619, 743, 830 |
| Alw21I | GWGCWC | 2 cut(s) | 110, 262 |
| Alw26I | GTCTC | 2 cut(s) | 143, 854 |
| AoxI | GGCC | 1 cut(s) | 715 |
| ApeKI | GCWGC | 2 cut(s) | 395, 830 |
| ApoI | RAATTY | 3 cut(s) | 89, 185, 539 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 162 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BaeGI | GKGCMC | 1 cut(s) | 363 |
| BauI | CACGAG | 2 cut(s) | 176, 261 |
| Bbv12I | GWGCWC | 2 cut(s) | 110, 262 |
| BbvI | GCAGC | 2 cut(s) | 382, 817 |
| BccI | CCATC | 3 cut(s) | 357, 592, 731 |
| BclI | TGATCA | 1 cut(s) | 148 |
| BcoDI | GTCTC | 2 cut(s) | 143, 854 |
| BfaI | CTAG | 1 cut(s) | 719 |
| BfmI | CTRYAG | 1 cut(s) | 881 |
| BfuAI | ACCTGC | 1 cut(s) | 631 |
| BisI | GCNGC | 2 cut(s) | 396, 831 |
| BlsI | GCNGC | 2 cut(s) | 397, 832 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 768 |
| BmgT120I | GGNCC | 1 cut(s) | 162 |
| BmiI | GGNNCC | 1 cut(s) | 485 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BsaBI | GATNNNNATC | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 355 |
| Bse8I | GATNNNNATC | 1 cut(s) | 132 |
| BseJI | GATNNNNATC | 1 cut(s) | 132 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BseMII | CTCAG | 2 cut(s) | 399, 703 |
| BseRI | GAGGAG | 3 cut(s) | 216, 279, 434 |
| BseSI | GKGCMC | 1 cut(s) | 363 |
| BseXI | GCAGC | 2 cut(s) | 382, 817 |
| BshFI | GGCC | 1 cut(s) | 717 |
| BsiHKAI | GWGCWC | 2 cut(s) | 110, 262 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BsmAI | GTCTC | 2 cut(s) | 143, 854 |
| BsmBI | CGTCTC | 1 cut(s) | 143 |
| BsnI | GGCC | 1 cut(s) | 717 |
| Bsp1286I | GDGCHC | 3 cut(s) | 110, 262, 363 |
| Bsp143I | GATC | 3 cut(s) | 133, 148, 877 |
| BspANI | GGCC | 1 cut(s) | 717 |
| BspCNI | CTCAG | 2 cut(s) | 400, 702 |
| BspLI | GGNNCC | 1 cut(s) | 485 |
| BspMI | ACCTGC | 1 cut(s) | 631 |
| BssMI | GATC | 3 cut(s) | 133, 148, 877 |
| BssSI | CACGAG | 2 cut(s) | 176, 261 |
| Bst2BI | CACGAG | 2 cut(s) | 176, 261 |
| Bst4CI | ACNGT | 3 cut(s) | 29, 528, 803 |
| Bst6I | CTCTTC | 1 cut(s) | 111 |
| BstC8I | GCNNGC | 3 cut(s) | 213, 745, 819 |
| BstDEI | CTNAG | 2 cut(s) | 408, 689 |
| BstKTI | GATC | 3 cut(s) | 136, 151, 880 |
| BstMAI | GTCTC | 2 cut(s) | 143, 854 |
| BstMBI | GATC | 3 cut(s) | 133, 148, 877 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 404, 827 |
| BstNSI | RCATGY | 2 cut(s) | 43, 827 |
| BstSFI | CTRYAG | 1 cut(s) | 881 |
| BstSLI | GKGCMC | 1 cut(s) | 363 |
| BstV1I | GCAGC | 2 cut(s) | 382, 817 |
| BsuRI | GGCC | 1 cut(s) | 717 |
| BtsIMutI | CAGTG | 4 cut(s) | 215, 533, 534, 873 |
| BveI | ACCTGC | 1 cut(s) | 631 |
| Cac8I | GCNNGC | 3 cut(s) | 213, 745, 819 |
| Cfr13I | GGNCC | 1 cut(s) | 162 |
| Csp6I | GTAC | 1 cut(s) | 75 |
| CviAII | CATG | 4 cut(s) | 40, 583, 778, 824 |
| CviQI | GTAC | 1 cut(s) | 75 |
| DdeI | CTNAG | 2 cut(s) | 408, 689 |
| DpnI | GATC | 3 cut(s) | 135, 150, 879 |
| DpnII | GATC | 3 cut(s) | 133, 148, 877 |
| DraIII | CACNNNGTG | 1 cut(s) | 565 |
| DriI | GACNNNNNGTC | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 1 cut(s) | 111 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 768 |
| EarI | CTCTTC | 1 cut(s) | 111 |
| Eco147I | AGGCCT | 1 cut(s) | 717 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| Esp3I | CGTCTC | 1 cut(s) | 143 |
| FaeI | CATG | 4 cut(s) | 43, 586, 781, 827 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 417, 449 |
| FatI | CATG | 4 cut(s) | 39, 582, 777, 823 |
| FauNDI | CATATG | 2 cut(s) | 229, 510 |
| FbaI | TGATCA | 1 cut(s) | 148 |
| Fnu4HI | GCNGC | 2 cut(s) | 396, 831 |
| Fsp4HI | GCNGC | 2 cut(s) | 396, 831 |
| FspBI | CTAG | 1 cut(s) | 719 |
| GluI | GCNGC | 2 cut(s) | 396, 831 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HaeIII | GGCC | 1 cut(s) | 717 |
| Hin1II | CATG | 4 cut(s) | 43, 586, 781, 827 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 3 cut(s) | 67, 119, 491 |
| Hpy166II | GTNNAC | 2 cut(s) | 77, 534 |
| Hpy188I | TCNGA | 3 cut(s) | 191, 318, 652 |
| Hpy188III | TCNNGA | 2 cut(s) | 668, 734 |
| Hpy8I | GTNNAC | 2 cut(s) | 77, 534 |
| HpyAV | CCTTC | 2 cut(s) | 246, 467 |
| HpyCH4III | ACNGT | 3 cut(s) | 29, 528, 803 |
| HpyCH4V | TGCA | 5 cut(s) | 157, 706, 747, 781, 821 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 404, 827 |
| HpyF3I | CTNAG | 2 cut(s) | 408, 689 |
| Hsp92II | CATG | 4 cut(s) | 43, 586, 781, 827 |
| Ksp22I | TGATCA | 1 cut(s) | 148 |
| Kzo9I | GATC | 3 cut(s) | 133, 148, 877 |
| LmnI | GCTCC | 1 cut(s) | 740 |
| LpnPI | CCDG | 6 cut(s) | 57, 183, 480, 501, 626, 681 |
| Lsp1109I | GCAGC | 2 cut(s) | 382, 817 |
| MaeI | CTAG | 1 cut(s) | 719 |
| MalI | GATC | 3 cut(s) | 135, 150, 879 |
| MboI | GATC | 3 cut(s) | 133, 148, 877 |
| MboII | GAAGA | 3 cut(s) | 76, 128, 437 |
| MfeI | CAATTG | 3 cut(s) | 111, 152, 701 |
| MhlI | GDGCHC | 3 cut(s) | 110, 262, 363 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 1 cut(s) | 607 |
| MroXI | GAANNNNTTC | 1 cut(s) | 432 |
| MseI | TTAA | 1 cut(s) | 342 |
| MslI | CAYNNNNRTG | 1 cut(s) | 587 |
| MunI | CAATTG | 3 cut(s) | 111, 152, 701 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 404, 827 |
| NdeI | CATATG | 2 cut(s) | 229, 510 |
| NdeII | GATC | 3 cut(s) | 133, 148, 877 |
| NlaIII | CATG | 4 cut(s) | 43, 586, 781, 827 |
| NlaIV | GGNNCC | 1 cut(s) | 485 |
| NspI | RCATGY | 2 cut(s) | 43, 827 |
| PceI | AGGCCT | 1 cut(s) | 717 |
| PciI | ACATGT | 1 cut(s) | 823 |
| PdmI | GAANNNNTTC | 1 cut(s) | 432 |
| PfeI | GAWTC | 2 cut(s) | 67, 491 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 355 |
| PkrI | GCNGC | 2 cut(s) | 397, 832 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| PpuMI | RGGWCCY | 1 cut(s) | 162 |
| PscI | ACATGT | 1 cut(s) | 823 |
| Psp5II | RGGWCCY | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 1 cut(s) | 485 |
| PspPI | GGNCC | 1 cut(s) | 162 |
| PspPPI | RGGWCCY | 1 cut(s) | 162 |
| RsaI | GTAC | 1 cut(s) | 76 |
| RsaNI | GTAC | 1 cut(s) | 75 |
| RseI | CAYNNNNRTG | 1 cut(s) | 587 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 2 cut(s) | 396, 831 |
| Sau3AI | GATC | 3 cut(s) | 133, 148, 877 |
| Sau96I | GGNCC | 1 cut(s) | 162 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SduI | GDGCHC | 3 cut(s) | 110, 262, 363 |
| SfcI | CTRYAG | 1 cut(s) | 881 |
| SinI | GGWCC | 1 cut(s) | 162 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 587 |
| SseBI | AGGCCT | 1 cut(s) | 717 |
| SspMI | CTAG | 1 cut(s) | 719 |
| StuI | AGGCCT | 1 cut(s) | 717 |
| TaaI | ACNGT | 3 cut(s) | 29, 528, 803 |
| TaqI | TCGA | 1 cut(s) | 543 |
| TfiI | GAWTC | 2 cut(s) | 67, 491 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TscAI | CASTG | 4 cut(s) | 222, 533, 541, 880 |
| TseI | GCWGC | 2 cut(s) | 395, 830 |
| TspRI | CASTG | 4 cut(s) | 222, 533, 541, 880 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| XapI | RAATTY | 3 cut(s) | 89, 185, 539 |
| XceI | RCATGY | 2 cut(s) | 43, 827 |
| XmnI | GAANNNNTTC | 1 cut(s) | 432 |
| XspI | CTAG | 1 cut(s) | 719 |