Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Methyltransf_7 | PF03492 | 48 - 128 | 2e-22 | SAM dependent carboxyl methyltransferase |
| Retrotran_gag_2 | PF14223 | 123 - 266 | 2.7e-28 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 401 - 479 | 4.2e-20 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 476 - 519 | 4.7e-07 | GAG-pre-integrase domain |
| SH3_retrovirus | PF25597 | 660 - 723 | 8.6e-26 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 827 - 1069 | 2.1e-78 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| Methyltransf_7 | PF03492 | 1319 - 1427 | 6e-39 | SAM dependent carboxyl methyltransferase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2544, 3750 |
| Acc36I | ACCTGC | 1 cut(s) | 2894 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2525 |
| AccI | GTMKAC | 1 cut(s) | 554 |
| AccIII | TCCGGA | 1 cut(s) | 206 |
| AciI | CCGC | 3 cut(s) | 227, 1172, 3714 |
| AclWI | GGATC | 3 cut(s) | 352, 449, 4118 |
| AcoI | YGGCCR | 1 cut(s) | 3870 |
| AcsI | RAATTY | 6 cut(s) | 430, 491, 545, 3007, 3017, 3167 |
| AcuI | CTGAAG | 2 cut(s) | 1487, 2280 |
| AfaI | GTAC | 6 cut(s) | 1004, 1251, 1494, 2035, 2822, 3824 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 226, 2525, 4107 |
| AflII | CTTAAG | 1 cut(s) | 2849 |
| AgeI | ACCGGT | 1 cut(s) | 2650 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1183 |
| AhlI | ACTAGT | 1 cut(s) | 2030 |
| AjnI | CCWGG | 6 cut(s) | 317, 470, 1948, 2486, 3973, 4036 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1479, 1511 |
| Alw21I | GWGCWC | 2 cut(s) | 1434, 3512 |
| AlwI | GGATC | 3 cut(s) | 352, 449, 4118 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 88, 3599 |
| Aor13HI | TCCGGA | 1 cut(s) | 206 |
| AoxI | GGCC | 5 cut(s) | 1620, 3308, 3621, 3870, 4013 |
| ApeKI | GCWGC | 7 cut(s) | 148, 156, 962, 1127, 2693, 3326, 3614 |
| ApoI | RAATTY | 6 cut(s) | 430, 491, 545, 3007, 3017, 3167 |
| AseI | ATTAAT | 3 cut(s) | 674, 1521, 2883 |
| AsiGI | ACCGGT | 1 cut(s) | 2650 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 432 |
| AspLEI | GCGC | 1 cut(s) | 397 |
| AspS9I | GGNCC | 5 cut(s) | 209, 2318, 3356, 4013, 4273 |
| AsuC2I | CCSGG | 1 cut(s) | 4278 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 1691, 1746, 3680 |
| AvaII | GGWCC | 4 cut(s) | 209, 2318, 3356, 4273 |
| BalI | TGGCCA | 1 cut(s) | 3872 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 893, 925 |
| BauI | CACGAG | 1 cut(s) | 4257 |
| BbsI | GAAGAC | 2 cut(s) | 50, 527 |
| Bbv12I | GWGCWC | 2 cut(s) | 1434, 3512 |
| BbvCI | CCTCAGC | 1 cut(s) | 1854 |
| BbvI | GCAGC | 7 cut(s) | 160, 168, 949, 1139, 2680, 3338, 3626 |
| BciT130I | CCWGG | 6 cut(s) | 319, 472, 1950, 2488, 3975, 4038 |
| BciVI | GTATCC | 1 cut(s) | 1336 |
| BclI | TGATCA | 3 cut(s) | 1669, 2332, 2776 |
| BcnI | CCSGG | 1 cut(s) | 4278 |
| BcuI | ACTAGT | 1 cut(s) | 2030 |
| BfaI | CTAG | 7 cut(s) | 648, 1809, 2031, 2495, 2658, 2922, 3363 |
| BfmI | CTRYAG | 4 cut(s) | 97, 963, 1475, 3591 |
| BfoI | RGCGCY | 1 cut(s) | 398 |
| BfrI | CTTAAG | 1 cut(s) | 2849 |
| BfuAI | ACCTGC | 1 cut(s) | 2894 |
| BfuI | GTATCC | 1 cut(s) | 1336 |
| BglII | AGATCT | 2 cut(s) | 2253, 2306 |
| BisI | GCNGC | 7 cut(s) | 149, 157, 963, 1128, 2694, 3327, 3615 |
| BlsI | GCNGC | 7 cut(s) | 150, 158, 964, 1129, 2695, 3328, 3616 |
| Bme1390I | CCNGG | 7 cut(s) | 319, 472, 1950, 2488, 3975, 4038, 4278 |
| Bme18I | GGWCC | 4 cut(s) | 209, 2318, 3356, 4273 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1183 |
| BmgT120I | GGNCC | 5 cut(s) | 209, 2318, 3356, 4013, 4273 |
| BmiI | GGNNCC | 6 cut(s) | 211, 469, 1137, 4014, 4122, 4275 |
| BmrFI | CCNGG | 7 cut(s) | 319, 472, 1950, 2488, 3975, 4038, 4278 |
| BmrI | ACTGGG | 1 cut(s) | 3012 |
| BmuI | ACTGGG | 1 cut(s) | 3012 |
| BpiI | GAAGAC | 2 cut(s) | 50, 527 |
| BpmI | CTGGAG | 1 cut(s) | 1862 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1131, 1854 |
| BpuEI | CTTGAG | 4 cut(s) | 709, 1086, 2813, 4013 |
| BpuMI | CCSGG | 1 cut(s) | 4278 |
| Bsa29I | ATCGAT | 2 cut(s) | 883, 3880 |
| BsaAI | YACGTR | 1 cut(s) | 3701 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2331 |
| BsaI | GGTCTC | 2 cut(s) | 1397, 2633 |
| BsaWI | WCCGGW | 2 cut(s) | 206, 2650 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 226, 2525, 4107 |
| Bse118I | RCCGGY | 1 cut(s) | 2650 |
| Bse1I | ACTGG | 6 cut(s) | 1240, 1303, 1845, 2159, 2519, 3007 |
| Bse3DI | GCAATG | 8 cut(s) | 1068, 1555, 1866, 2454, 2472, 3048, 3459, 3968 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2331 |
| BseAI | TCCGGA | 1 cut(s) | 206 |
| BseBI | CCWGG | 6 cut(s) | 319, 472, 1950, 2488, 3975, 4038 |
| BseCI | ATCGAT | 2 cut(s) | 883, 3880 |
| BseGI | GGATG | 9 cut(s) | 203, 249, 1544, 2332, 2434, 2992, 3241, 3502, 3710 |
| BseJI | GATNNNNATC | 1 cut(s) | 2331 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 226, 2525, 4107 |
| BseMI | GCAATG | 8 cut(s) | 1068, 1555, 1866, 2454, 2472, 3048, 3459, 3968 |
| BseNI | ACTGG | 6 cut(s) | 1240, 1303, 1845, 2159, 2519, 3007 |
| BseRI | GAGGAG | 1 cut(s) | 3192 |
| BseXI | GCAGC | 7 cut(s) | 160, 168, 949, 1139, 2680, 3338, 3626 |
| BsgI | GTGCAG | 2 cut(s) | 2679, 3633 |
| BshFI | GGCC | 5 cut(s) | 1622, 3310, 3623, 3872, 4015 |
| BshTI | ACCGGT | 1 cut(s) | 2650 |
| BshVI | ATCGAT | 2 cut(s) | 883, 3880 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1434, 3512 |
| BsiSI | CCGG | 3 cut(s) | 207, 2651, 4278 |
| BslFI | GGGAC | 4 cut(s) | 335, 2165, 4167, 4259 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 226, 2525, 4107 |
| BsmFI | GGGAC | 4 cut(s) | 335, 2165, 4167, 4259 |
| BsmI | GAATGC | 2 cut(s) | 2164, 2177 |
| BsnI | GGCC | 5 cut(s) | 1622, 3310, 3623, 3872, 4015 |
| Bso31I | GGTCTC | 2 cut(s) | 1397, 2633 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1434, 3512 |
| Bsp13I | TCCGGA | 1 cut(s) | 206 |
| Bsp1407I | TGTACA | 1 cut(s) | 2820 |
| BspACI | CCGC | 3 cut(s) | 227, 1172, 3714 |
| BspANI | GGCC | 5 cut(s) | 1622, 3310, 3623, 3872, 4015 |
| BspDI | ATCGAT | 2 cut(s) | 883, 3880 |
| BspEI | TCCGGA | 1 cut(s) | 206 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspLI | GGNNCC | 6 cut(s) | 211, 469, 1137, 4014, 4122, 4275 |
| BspMAI | CTGCAG | 2 cut(s) | 967, 3595 |
| BspMI | ACCTGC | 1 cut(s) | 2894 |
| BspPI | GGATC | 3 cut(s) | 352, 449, 4118 |
| BspQI | GCTCTTC | 3 cut(s) | 208, 3500, 4260 |
| BspTI | CTTAAG | 1 cut(s) | 2849 |
| BspTNI | GGTCTC | 2 cut(s) | 1397, 2633 |
| BsrDI | GCAATG | 8 cut(s) | 1068, 1555, 1866, 2454, 2472, 3048, 3459, 3968 |
| BsrFI | RCCGGY | 1 cut(s) | 2650 |
| BsrGI | TGTACA | 1 cut(s) | 2820 |
| BsrI | ACTGG | 6 cut(s) | 1240, 1303, 1845, 2159, 2519, 3007 |
| BssAI | RCCGGY | 1 cut(s) | 2650 |
| BssNAI | GTATAC | 1 cut(s) | 555 |
| BssSI | CACGAG | 1 cut(s) | 4257 |
| BssT1I | CCWWGG | 4 cut(s) | 390, 1281, 2785, 4140 |
| Bst1107I | GTATAC | 1 cut(s) | 555 |
| Bst2BI | CACGAG | 1 cut(s) | 4257 |
| Bst2UI | CCWGG | 6 cut(s) | 319, 472, 1950, 2488, 3975, 4038 |
| Bst6I | CTCTTC | 7 cut(s) | 170, 208, 633, 2412, 2757, 3500, 4260 |
| BstAFI | CTTAAG | 1 cut(s) | 2849 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2654 |
| BstAUI | TGTACA | 1 cut(s) | 2820 |
| BstBAI | YACGTR | 1 cut(s) | 3701 |
| BstC8I | GCNNGC | 5 cut(s) | 139, 989, 1034, 2856, 4055 |
| BstF5I | GGATG | 9 cut(s) | 203, 249, 1544, 2332, 2434, 2992, 3241, 3502, 3710 |
| BstH2I | RGCGCY | 1 cut(s) | 398 |
| BstHHI | GCGC | 1 cut(s) | 397 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2654, 2693, 2864, 3620 |
| BstNI | CCWGG | 6 cut(s) | 319, 472, 1950, 2488, 3975, 4038 |
| BstSCI | CCNGG | 7 cut(s) | 317, 470, 1948, 2486, 3973, 4036, 4276 |
| BstSFI | CTRYAG | 4 cut(s) | 97, 963, 1475, 3591 |
| BstV1I | GCAGC | 7 cut(s) | 160, 168, 949, 1139, 2680, 3338, 3626 |
| BstV2I | GAAGAC | 2 cut(s) | 50, 527 |
| BstX2I | RGATCY | 4 cut(s) | 441, 2253, 2306, 4110 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1235, 2125, 2868 |
| BstYI | RGATCY | 4 cut(s) | 441, 2253, 2306, 4110 |
| BstZ17I | GTATAC | 1 cut(s) | 555 |
| Bsu15I | ATCGAT | 2 cut(s) | 883, 3880 |
| BsuI | GTATCC | 1 cut(s) | 1336 |
| BsuRI | GGCC | 5 cut(s) | 1622, 3310, 3623, 3872, 4015 |
| BsuTUI | ATCGAT | 2 cut(s) | 883, 3880 |
| BtsCI | GGATG | 9 cut(s) | 203, 249, 1544, 2332, 2434, 2992, 3241, 3502, 3710 |
| BtsI | GCAGTG | 1 cut(s) | 1878 |
| BveI | ACCTGC | 1 cut(s) | 2894 |
| Cac8I | GCNNGC | 5 cut(s) | 139, 989, 1034, 2856, 4055 |
| CaiI | CAGNNNCTG | 2 cut(s) | 88, 3599 |
| CciI | TCATGA | 1 cut(s) | 378 |
| CfoI | GCGC | 1 cut(s) | 397 |
| Cfr10I | RCCGGY | 1 cut(s) | 2650 |
| Cfr13I | GGNCC | 5 cut(s) | 209, 2318, 3356, 4013, 4273 |
| ClaI | ATCGAT | 2 cut(s) | 883, 3880 |
| Csp6I | GTAC | 6 cut(s) | 1003, 1250, 1493, 2034, 2821, 3823 |
| CspAI | ACCGGT | 1 cut(s) | 2650 |
| CviQI | GTAC | 6 cut(s) | 1003, 1250, 1493, 2034, 2821, 3823 |
| DraI | TTTAAA | 2 cut(s) | 180, 2745 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1183 |
| EaeI | YGGCCR | 1 cut(s) | 3870 |
| Eam1104I | CTCTTC | 7 cut(s) | 170, 208, 633, 2412, 2757, 3500, 4260 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1183 |
| EarI | CTCTTC | 7 cut(s) | 170, 208, 633, 2412, 2757, 3500, 4260 |
| Eco130I | CCWWGG | 4 cut(s) | 390, 1281, 2785, 4140 |
| Eco31I | GGTCTC | 2 cut(s) | 1397, 2633 |
| Eco32I | GATATC | 2 cut(s) | 238, 3316 |
| Eco47I | GGWCC | 4 cut(s) | 209, 2318, 3356, 4273 |
| Eco57I | CTGAAG | 2 cut(s) | 1487, 2280 |
| EcoRI | GAATTC | 2 cut(s) | 3007, 3017 |
| EcoRII | CCWGG | 6 cut(s) | 317, 470, 1948, 2486, 3973, 4036 |
| EcoRV | GATATC | 2 cut(s) | 238, 3316 |
| EcoT14I | CCWWGG | 4 cut(s) | 390, 1281, 2785, 4140 |
| EcoT22I | ATGCAT | 2 cut(s) | 3354, 3526 |
| ErhI | CCWWGG | 4 cut(s) | 390, 1281, 2785, 4140 |
| FaqI | GGGAC | 4 cut(s) | 335, 2165, 4167, 4259 |
| FauNDI | CATATG | 4 cut(s) | 3372, 3433, 4172, 4195 |
| FbaI | TGATCA | 3 cut(s) | 1669, 2332, 2776 |
| FblI | GTMKAC | 1 cut(s) | 554 |
| Fnu4HI | GCNGC | 7 cut(s) | 149, 157, 963, 1128, 2694, 3327, 3615 |
| FokI | GGATG | 9 cut(s) | 210, 236, 1551, 2339, 2441, 2999, 3248, 3509, 3697 |
| Fsp4HI | GCNGC | 7 cut(s) | 149, 157, 963, 1128, 2694, 3327, 3615 |
| FspBI | CTAG | 7 cut(s) | 648, 1809, 2031, 2495, 2658, 2922, 3363 |
| GlaI | GCGC | 1 cut(s) | 396 |
| GluI | GCNGC | 7 cut(s) | 149, 157, 963, 1128, 2694, 3327, 3615 |
| GsuI | CTGGAG | 1 cut(s) | 1862 |
| HaeII | RGCGCY | 1 cut(s) | 398 |
| HaeIII | GGCC | 5 cut(s) | 1622, 3310, 3623, 3872, 4015 |
| HapII | CCGG | 3 cut(s) | 207, 2651, 4278 |
| HhaI | GCGC | 1 cut(s) | 397 |
| Hin6I | GCGC | 1 cut(s) | 395 |
| HinP1I | GCGC | 1 cut(s) | 395 |
| HincII | GTYRAC | 3 cut(s) | 1177, 1459, 1864 |
| HindII | GTYRAC | 3 cut(s) | 1177, 1459, 1864 |
| HindIII | AAGCTT | 8 cut(s) | 1330, 1929, 2018, 2081, 2142, 2618, 3902, 3943 |
| HpaII | CCGG | 3 cut(s) | 207, 2651, 4278 |
| HphI | GGTGA | 4 cut(s) | 130, 1691, 1746, 3680 |
| Hpy166II | GTNNAC | 8 cut(s) | 555, 937, 1177, 1459, 1864, 2321, 2821, 3245 |
| Hpy8I | GTNNAC | 8 cut(s) | 555, 937, 1177, 1459, 1864, 2321, 2821, 3245 |
| HpyCH4IV | ACGT | 1 cut(s) | 3700 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2654, 2693, 2864, 3620 |
| HpySE526I | ACGT | 1 cut(s) | 3700 |
| HspAI | GCGC | 1 cut(s) | 395 |
| Kpn2I | TCCGGA | 1 cut(s) | 206 |
| Ksp22I | TGATCA | 3 cut(s) | 1669, 2332, 2776 |
| LguI | GCTCTTC | 3 cut(s) | 208, 3500, 4260 |
| LmnI | GCTCC | 6 cut(s) | 413, 467, 1429, 2491, 2863, 4126 |
| Lsp1109I | GCAGC | 7 cut(s) | 160, 168, 949, 1139, 2680, 3338, 3626 |
| MaeI | CTAG | 7 cut(s) | 648, 1809, 2031, 2495, 2658, 2922, 3363 |
| MaeII | ACGT | 1 cut(s) | 3700 |
| MaeIII | GTNAC | 6 cut(s) | 1064, 1223, 2606, 3470, 3701, 4254 |
| MflI | RGATCY | 4 cut(s) | 441, 2253, 2306, 4110 |
| MhlI | GDGCHC | 2 cut(s) | 1434, 3512 |
| MlsI | TGGCCA | 1 cut(s) | 3872 |
| MluNI | TGGCCA | 1 cut(s) | 3872 |
| MlyI | GAGTC | 5 cut(s) | 841, 2090, 2251, 2820, 3268 |
| MmeI | TCCRAC | 3 cut(s) | 771, 1919, 3259 |
| Mox20I | TGGCCA | 1 cut(s) | 3872 |
| Mph1103I | ATGCAT | 2 cut(s) | 3354, 3526 |
| MroI | TCCGGA | 1 cut(s) | 206 |
| MroXI | GAANNNNTTC | 1 cut(s) | 432 |
| MscI | TGGCCA | 1 cut(s) | 3872 |
| MslI | CAYNNNNRTG | 4 cut(s) | 27, 1050, 1452, 1871 |
| Msp20I | TGGCCA | 1 cut(s) | 3872 |
| MspCI | CTTAAG | 1 cut(s) | 2849 |
| MspI | CCGG | 3 cut(s) | 207, 2651, 4278 |
| MspR9I | CCNGG | 7 cut(s) | 319, 472, 1950, 2488, 3975, 4038, 4278 |
| Mva1269I | GAATGC | 2 cut(s) | 2164, 2177 |
| MvaI | CCWGG | 6 cut(s) | 319, 472, 1950, 2488, 3975, 4038 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2654, 2693, 2864, 3620 |
| NciI | CCSGG | 1 cut(s) | 4278 |
| NdeI | CATATG | 4 cut(s) | 3372, 3433, 4172, 4195 |
| NlaIV | GGNNCC | 6 cut(s) | 211, 469, 1137, 4014, 4122, 4275 |
| NmuCI | GTSAC | 4 cut(s) | 1064, 3470, 3701, 4254 |
| NsiI | ATGCAT | 2 cut(s) | 3354, 3526 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PasI | CCCWGGG | 1 cut(s) | 318 |
| PciSI | GCTCTTC | 3 cut(s) | 208, 3500, 4260 |
| PctI | GAATGC | 2 cut(s) | 2164, 2177 |
| PdmI | GAANNNNTTC | 1 cut(s) | 432 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2525 |
| PinAI | ACCGGT | 1 cut(s) | 2650 |
| PkrI | GCNGC | 7 cut(s) | 150, 158, 964, 1129, 2695, 3328, 3616 |
| PleI | GAGTC | 5 cut(s) | 840, 2090, 2250, 2820, 3267 |
| PpsI | GAGTC | 5 cut(s) | 840, 2090, 2250, 2820, 3267 |
| Ppu21I | YACGTR | 1 cut(s) | 3701 |
| PshBI | ATTAAT | 3 cut(s) | 674, 1521, 2883 |
| PsiI | TTATAA | 2 cut(s) | 2544, 3750 |
| Psp6I | CCWGG | 6 cut(s) | 317, 470, 1948, 2486, 3973, 4036 |
| PspGI | CCWGG | 6 cut(s) | 317, 470, 1948, 2486, 3973, 4036 |
| PspN4I | GGNNCC | 6 cut(s) | 211, 469, 1137, 4014, 4122, 4275 |
| PspPI | GGNCC | 5 cut(s) | 209, 2318, 3356, 4013, 4273 |
| PstI | CTGCAG | 2 cut(s) | 967, 3595 |
| PstNI | CAGNNNCTG | 2 cut(s) | 88, 3599 |
| PsuI | RGATCY | 4 cut(s) | 441, 2253, 2306, 4110 |
| RsaI | GTAC | 6 cut(s) | 1004, 1251, 1494, 2035, 2822, 3824 |
| RsaNI | GTAC | 6 cut(s) | 1003, 1250, 1493, 2034, 2821, 3823 |
| RseI | CAYNNNNRTG | 4 cut(s) | 27, 1050, 1452, 1871 |
| SapI | GCTCTTC | 3 cut(s) | 208, 3500, 4260 |
| SatI | GCNGC | 7 cut(s) | 149, 157, 963, 1128, 2694, 3327, 3615 |
| Sau96I | GGNCC | 5 cut(s) | 209, 2318, 3356, 4013, 4273 |
| SchI | GAGTC | 5 cut(s) | 841, 2090, 2251, 2820, 3268 |
| ScrFI | CCNGG | 7 cut(s) | 319, 472, 1950, 2488, 3975, 4038, 4278 |
| SduI | GDGCHC | 2 cut(s) | 1434, 3512 |
| SfcI | CTRYAG | 4 cut(s) | 97, 963, 1475, 3591 |
| SinI | GGWCC | 4 cut(s) | 209, 2318, 3356, 4273 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 27, 1050, 1452, 1871 |
| SmlI | CTYRAG | 5 cut(s) | 724, 1101, 2828, 2849, 3992 |
| SmoI | CTYRAG | 5 cut(s) | 724, 1101, 2828, 2849, 3992 |
| SpeI | ACTAGT | 1 cut(s) | 2030 |
| SsiI | CCGC | 3 cut(s) | 227, 1172, 3714 |
| SspI | AATATT | 1 cut(s) | 2092 |
| SspMI | CTAG | 7 cut(s) | 648, 1809, 2031, 2495, 2658, 2922, 3363 |
| StyD4I | CCNGG | 7 cut(s) | 317, 470, 1948, 2486, 3973, 4036, 4276 |
| StyI | CCWWGG | 4 cut(s) | 390, 1281, 2785, 4140 |
| TaiI | ACGT | 1 cut(s) | 3703 |
| TaqI | TCGA | 4 cut(s) | 113, 347, 883, 3880 |
| TatI | WGTACW | 4 cut(s) | 1249, 2033, 2820, 3822 |
| TseFI | GTSAC | 4 cut(s) | 1064, 3470, 3701, 4254 |
| TseI | GCWGC | 7 cut(s) | 148, 156, 962, 1127, 2693, 3326, 3614 |
| Tsp45I | GTSAC | 4 cut(s) | 1064, 3470, 3701, 4254 |
| TspGWI | ACGGA | 2 cut(s) | 383, 1449 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2525 |
| Vha464I | CTTAAG | 1 cut(s) | 2849 |
| VpaK11BI | GGWCC | 4 cut(s) | 209, 2318, 3356, 4273 |
| VspI | ATTAAT | 3 cut(s) | 674, 1521, 2883 |
| XapI | RAATTY | 6 cut(s) | 430, 491, 545, 3007, 3017, 3167 |
| XbaI | TCTAGA | 1 cut(s) | 647 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 220, 1288, 1845 |
| XmiI | GTMKAC | 1 cut(s) | 554 |
| XmnI | GAANNNNTTC | 1 cut(s) | 432 |
| XspI | CTAG | 7 cut(s) | 648, 1809, 2031, 2495, 2658, 2922, 3363 |
| Zsp2I | ATGCAT | 2 cut(s) | 3354, 3526 |