MD01G1037300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000154
Physical Location & Seq
Reverse (-)
12922731 .. 12923611
881 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1037300.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAATGCAAATGTCAACAATCTGAATCAGATCACGACTTACAATGGAGATGAGAAGATAATCATTGGCAATGGTCAAGGTTTGGATGACAAGGCAACCAAAGTGGTACTATACCAAGGAAGAAGTGATGGGGAACTCTTCACCATACCTATGACAGTGTTTACAAGATCAAGTTCAATCAATGGATTGCACAAAAAGTTGAAGGCTGGATTTCTTGGAAAAGCTATTAAAACTGCAATATGGCATAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

9.92

Isoelectric Point (pI)

20.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 177, 202
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 133
BccI CCATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 76
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 30, 167
BsrDI GCAATG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 30, 167
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 33, 170
BstMBI GATC 2 cut(s) 30, 167
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 162
Csp6I GTAC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviJI RGCY 2 cut(s) 206, 224
CviKI_1 RGCY 2 cut(s) 206, 224
CviQI GTAC 1 cut(s) 107
DpnI GATC 2 cut(s) 32, 169
DpnII GATC 2 cut(s) 30, 167
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaiI YATR 5 cut(s) 112, 146, 152, 241, 246
FokI GGATG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 16, 162
Hpy188I TCNGA 2 cut(s) 24, 30
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 16, 162
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 8, 190, 236
Kzo9I GATC 2 cut(s) 30, 167
LpnPI CCDG 1 cut(s) 192
MalI GATC 2 cut(s) 32, 169
MboI GATC 2 cut(s) 30, 167
MboII GAAGA 3 cut(s) 67, 130, 132
MnlI CCTC 1 cut(s) 243
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 10
NdeII GATC 2 cut(s) 30, 167
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 25
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 2 cut(s) 30, 167
SetI ASST 4 cut(s) 82, 151, 226, 254
SgeI CNNG 8 cut(s) 46, 89, 103, 128, 177, 183, 219, 227
SmiMI CAYNNNNRTG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 157
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.