Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 90 - 257 | 1e-26 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 355 - 433 | 6.5e-29 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 477 - 536 | 1.5e-13 | GAG-pre-integrase domain |
| rve | PF00665 | 550 - 651 | 2.5e-14 | Integrase core domain |
| SH3_retrovirus | PF25597 | 725 - 787 | 1.3e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 883 - 1127 | 8.1e-82 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2991 |
| Acc36I | ACCTGC | 1 cut(s) | 2362 |
| AccBSI | CCGCTC | 1 cut(s) | 3411 |
| AccI | GTMKAC | 2 cut(s) | 1855, 2709 |
| AccII | CGCG | 1 cut(s) | 492 |
| AciI | CCGC | 9 cut(s) | 147, 150, 201, 204, 925, 2235, 3411, 3656, 3716 |
| AclWI | GGATC | 3 cut(s) | 2279, 2801, 3302 |
| AcoI | YGGCCR | 2 cut(s) | 151, 246 |
| AcsI | RAATTY | 2 cut(s) | 1059, 1996 |
| AcuI | CTGAAG | 5 cut(s) | 485, 2070, 2564, 2697, 2826 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 234, 248, 255, 262, 281, 1349 |
| AflII | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| AflIII | ACRYGT | 3 cut(s) | 1092, 3231, 3519 |
| AgeI | ACCGGT | 1 cut(s) | 227 |
| AhlI | ACTAGT | 2 cut(s) | 1835, 2377 |
| AjnI | CCWGG | 3 cut(s) | 965, 1637, 3382 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1184, 1216, 2332, 2364, 2587, 2619 |
| AleI | CACNNNNGTG | 2 cut(s) | 632, 1095 |
| Alw21I | GWGCWC | 4 cut(s) | 1637, 2979, 3683, 3710 |
| Alw26I | GTCTC | 7 cut(s) | 276, 542, 1781, 2310, 2615, 3528, 4076 |
| AlwI | GGATC | 3 cut(s) | 2279, 2801, 3302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 418 |
| Ama87I | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| AoxI | GGCC | 7 cut(s) | 151, 246, 1023, 1351, 2045, 2586, 3054 |
| ApoI | RAATTY | 2 cut(s) | 1059, 1996 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2309, 2341 |
| AseI | ATTAAT | 2 cut(s) | 29, 33 |
| AsiGI | ACCGGT | 1 cut(s) | 227 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 642, 1620, 1665, 2577 |
| AspLEI | GCGC | 2 cut(s) | 492, 494 |
| AspS9I | GGNCC | 3 cut(s) | 1465, 1685, 3582 |
| AsuC2I | CCSGG | 1 cut(s) | 257 |
| AsuII | TTCGAA | 2 cut(s) | 1703, 3398 |
| AvaI | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| AvaII | GGWCC | 3 cut(s) | 1465, 1685, 3582 |
| BanII | GRGCYC | 3 cut(s) | 262, 2979, 3710 |
| Bbv12I | GWGCWC | 4 cut(s) | 1637, 2979, 3683, 3710 |
| BbvCI | CCTCAGC | 2 cut(s) | 1557, 1953 |
| BccI | CCATC | 9 cut(s) | 560, 1015, 1853, 2545, 2824, 2920, 3284, 3340, 3419 |
| BceAI | ACGGC | 2 cut(s) | 190, 2128 |
| BciT130I | CCWGG | 3 cut(s) | 967, 1639, 3384 |
| BcnI | CCSGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 7 cut(s) | 276, 542, 1781, 2310, 2615, 3528, 4076 |
| BcuI | ACTAGT | 2 cut(s) | 1835, 2377 |
| BfmI | CTRYAG | 3 cut(s) | 1286, 3375, 3786 |
| BfrI | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| BfuAI | ACCTGC | 1 cut(s) | 2362 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2044 |
| BlpI | GCTNAGC | 1 cut(s) | 1119 |
| BmcAI | AGTACT | 1 cut(s) | 3366 |
| Bme1390I | CCNGG | 4 cut(s) | 257, 967, 1639, 3384 |
| Bme18I | GGWCC | 3 cut(s) | 1465, 1685, 3582 |
| BmeT110I | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| BmgT120I | GGNCC | 3 cut(s) | 1465, 1685, 3582 |
| BmiI | GGNNCC | 1 cut(s) | 3583 |
| BmrFI | CCNGG | 4 cut(s) | 257, 967, 1639, 3384 |
| BmrI | ACTGGG | 2 cut(s) | 148, 3183 |
| BmsI | GCATC | 6 cut(s) | 1997, 2162, 2437, 2476, 3175, 3903 |
| BmuI | ACTGGG | 2 cut(s) | 148, 3183 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 34, 66, 36, 68, 1633, 1665 |
| BpmI | CTGGAG | 4 cut(s) | 428, 440, 1660, 4067 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1557, 1953, 3332 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1119 |
| Bpu14I | TTCGAA | 2 cut(s) | 1703, 3398 |
| BpuEI | CTTGAG | 2 cut(s) | 2446, 2488 |
| BpuMI | CCSGG | 1 cut(s) | 257 |
| Bsa29I | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BsaAI | YACGTR | 2 cut(s) | 676, 2563 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3299 |
| BsaI | GGTCTC | 3 cut(s) | 542, 2615, 4076 |
| BsaJI | CCNNGG | 7 cut(s) | 154, 699, 966, 1867, 2589, 3383, 3969 |
| BsaWI | WCCGGW | 2 cut(s) | 227, 1249 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 838, 868, 2921, 2951 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 234, 248, 255, 262, 281, 1349 |
| Bse118I | RCCGGY | 2 cut(s) | 227, 248 |
| Bse1I | ACTGG | 4 cut(s) | 143, 242, 2819, 3178 |
| Bse3DI | GCAATG | 6 cut(s) | 610, 1483, 2622, 3195, 3327, 3364 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3299 |
| BseBI | CCWGG | 3 cut(s) | 967, 1639, 3384 |
| BseCI | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BseDI | CCNNGG | 7 cut(s) | 154, 699, 966, 1867, 2589, 3383, 3969 |
| BseJI | GATNNNNATC | 1 cut(s) | 3299 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 234, 248, 255, 262, 281, 1349 |
| BseMI | GCAATG | 6 cut(s) | 610, 1483, 2622, 3195, 3327, 3364 |
| BseMII | CTCAG | 7 cut(s) | 549, 651, 661, 1110, 1571, 1967, 2150 |
| BseNI | ACTGG | 4 cut(s) | 143, 242, 2819, 3178 |
| BsePI | GCGCGC | 1 cut(s) | 490 |
| BseX3I | CGGCCG | 1 cut(s) | 151 |
| BsgI | GTGCAG | 4 cut(s) | 90, 124, 1102, 4004 |
| Bsh1236I | CGCG | 1 cut(s) | 492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 154 |
| BshFI | GGCC | 7 cut(s) | 153, 248, 1025, 1353, 2047, 2588, 3056 |
| BshTI | ACCGGT | 1 cut(s) | 227 |
| BshVI | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BsiEI | CGRYCG | 1 cut(s) | 154 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1637, 2979, 3683, 3710 |
| BsiHKCI | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| BsiSI | CCGG | 4 cut(s) | 228, 249, 256, 1250 |
| BsiWI | CGTACG | 1 cut(s) | 1985 |
| BslFI | GGGAC | 6 cut(s) | 155, 461, 945, 2073, 2366, 3595 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 234, 248, 255, 262, 281, 1349 |
| BsmAI | GTCTC | 7 cut(s) | 276, 542, 1781, 2310, 2615, 3528, 4076 |
| BsmBI | CGTCTC | 1 cut(s) | 2310 |
| BsmFI | GGGAC | 6 cut(s) | 155, 461, 945, 2073, 2366, 3595 |
| BsmI | GAATGC | 2 cut(s) | 2906, 3695 |
| BsnI | GGCC | 7 cut(s) | 153, 248, 1025, 1353, 2047, 2588, 3056 |
| Bso31I | GGTCTC | 3 cut(s) | 542, 2615, 4076 |
| BsoBI | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| Bsp119I | TTCGAA | 2 cut(s) | 1703, 3398 |
| Bsp1286I | GDGCHC | 5 cut(s) | 262, 1637, 2979, 3683, 3710 |
| Bsp1407I | TGTACA | 1 cut(s) | 3857 |
| Bsp143I | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1119 |
| Bsp19I | CCATGG | 1 cut(s) | 2589 |
| BspACI | CCGC | 9 cut(s) | 147, 150, 201, 204, 925, 2235, 3411, 3656, 3716 |
| BspANI | GGCC | 7 cut(s) | 153, 248, 1025, 1353, 2047, 2588, 3056 |
| BspCNI | CTCAG | 7 cut(s) | 550, 652, 660, 1111, 1570, 1966, 2151 |
| BspDI | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BspFNI | CGCG | 1 cut(s) | 492 |
| BspHI | TCATGA | 1 cut(s) | 3699 |
| BspLI | GGNNCC | 1 cut(s) | 3583 |
| BspMAI | CTGCAG | 1 cut(s) | 3790 |
| BspMI | ACCTGC | 1 cut(s) | 2362 |
| BspPI | GGATC | 3 cut(s) | 2279, 2801, 3302 |
| BspQI | GCTCTTC | 1 cut(s) | 3671 |
| BspT104I | TTCGAA | 2 cut(s) | 1703, 3398 |
| BspTI | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| BspTNI | GGTCTC | 3 cut(s) | 542, 2615, 4076 |
| BsrBI | CCGCTC | 1 cut(s) | 3411 |
| BsrDI | GCAATG | 6 cut(s) | 610, 1483, 2622, 3195, 3327, 3364 |
| BsrFI | RCCGGY | 2 cut(s) | 227, 248 |
| BsrGI | TGTACA | 1 cut(s) | 3857 |
| BsrI | ACTGG | 4 cut(s) | 143, 242, 2819, 3178 |
| BssAI | RCCGGY | 2 cut(s) | 227, 248 |
| BssECI | CCNNGG | 7 cut(s) | 154, 699, 966, 1867, 2589, 3383, 3969 |
| BssHII | GCGCGC | 1 cut(s) | 490 |
| BssMI | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| BssT1I | CCWWGG | 3 cut(s) | 699, 2589, 3969 |
| Bst2UI | CCWGG | 3 cut(s) | 967, 1639, 3384 |
| Bst6I | CTCTTC | 9 cut(s) | 336, 508, 687, 865, 877, 1002, 2115, 2198, 3671 |
| BstAFI | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 169, 986, 3283, 3794 |
| BstAUI | TGTACA | 1 cut(s) | 3857 |
| BstBAI | YACGTR | 2 cut(s) | 676, 2563 |
| BstBI | TTCGAA | 2 cut(s) | 1703, 3398 |
| BstDSI | CCRYGG | 1 cut(s) | 2589 |
| BstEII | GGTNACC | 2 cut(s) | 251, 1551 |
| BstFNI | CGCG | 1 cut(s) | 492 |
| BstHHI | GCGC | 2 cut(s) | 492, 494 |
| BstKTI | GATC | 6 cut(s) | 528, 2287, 2631, 2796, 3141, 3297 |
| BstMAI | GTCTC | 7 cut(s) | 276, 542, 1781, 2310, 2615, 3528, 4076 |
| BstMBI | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| BstMCI | CGRYCG | 1 cut(s) | 154 |
| BstNI | CCWGG | 3 cut(s) | 967, 1639, 3384 |
| BstNSI | RCATGY | 7 cut(s) | 112, 803, 1096, 2014, 2192, 3235, 3523 |
| BstPI | GGTNACC | 2 cut(s) | 251, 1551 |
| BstSCI | CCNGG | 4 cut(s) | 255, 965, 1637, 3382 |
| BstSFI | CTRYAG | 3 cut(s) | 1286, 3375, 3786 |
| BstUI | CGCG | 1 cut(s) | 492 |
| BstX2I | RGATCY | 1 cut(s) | 3294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1097 |
| BstYI | RGATCY | 1 cut(s) | 3294 |
| BstZI | CGGCCG | 1 cut(s) | 151 |
| Bsu15I | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BsuRI | GGCC | 7 cut(s) | 153, 248, 1025, 1353, 2047, 2588, 3056 |
| BsuTUI | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| BtgI | CCRYGG | 1 cut(s) | 2589 |
| BtgZI | GCGATG | 1 cut(s) | 205 |
| BtsI | GCAGTG | 2 cut(s) | 784, 2496 |
| BveI | ACCTGC | 1 cut(s) | 2362 |
| CaiI | CAGNNNCTG | 1 cut(s) | 418 |
| CciI | TCATGA | 1 cut(s) | 3699 |
| CfoI | GCGC | 2 cut(s) | 492, 494 |
| Cfr10I | RCCGGY | 2 cut(s) | 227, 248 |
| Cfr13I | GGNCC | 3 cut(s) | 1465, 1685, 3582 |
| ClaI | ATCGAT | 3 cut(s) | 723, 819, 2796 |
| CspAI | ACCGGT | 1 cut(s) | 227 |
| DpnI | GATC | 6 cut(s) | 527, 2286, 2630, 2795, 3140, 3296 |
| DpnII | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| EaeI | YGGCCR | 2 cut(s) | 151, 246 |
| EagI | CGGCCG | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 9 cut(s) | 336, 508, 687, 865, 877, 1002, 2115, 2198, 3671 |
| EarI | CTCTTC | 9 cut(s) | 336, 508, 687, 865, 877, 1002, 2115, 2198, 3671 |
| EciI | GGCGGA | 1 cut(s) | 219 |
| Ecl136II | GAGCTC | 2 cut(s) | 2977, 3708 |
| EclXI | CGGCCG | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 3 cut(s) | 699, 2589, 3969 |
| Eco147I | AGGCCT | 2 cut(s) | 1353, 3056 |
| Eco24I | GRGCYC | 3 cut(s) | 262, 2979, 3710 |
| Eco31I | GGTCTC | 3 cut(s) | 542, 2615, 4076 |
| Eco32I | GATATC | 1 cut(s) | 706 |
| Eco47I | GGWCC | 3 cut(s) | 1465, 1685, 3582 |
| Eco52I | CGGCCG | 1 cut(s) | 151 |
| Eco53kI | GAGCTC | 2 cut(s) | 2977, 3708 |
| Eco57I | CTGAAG | 5 cut(s) | 485, 2070, 2564, 2697, 2826 |
| Eco88I | CYCGRG | 5 cut(s) | 570, 1075, 2509, 3030, 3709 |
| Eco91I | GGTNACC | 2 cut(s) | 251, 1551 |
| EcoICRI | GAGCTC | 2 cut(s) | 2977, 3708 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1465 |
| EcoO65I | GGTNACC | 2 cut(s) | 251, 1551 |
| EcoRI | GAATTC | 1 cut(s) | 1996 |
| EcoRII | CCWGG | 3 cut(s) | 965, 1637, 3382 |
| EcoRV | GATATC | 1 cut(s) | 706 |
| EcoT14I | CCWWGG | 3 cut(s) | 699, 2589, 3969 |
| EcoT22I | ATGCAT | 3 cut(s) | 2012, 3697, 3918 |
| EcoT38I | GRGCYC | 3 cut(s) | 262, 2979, 3710 |
| ErhI | CCWWGG | 3 cut(s) | 699, 2589, 3969 |
| Esp3I | CGTCTC | 1 cut(s) | 2310 |
| FaqI | GGGAC | 6 cut(s) | 155, 461, 945, 2073, 2366, 3595 |
| FauI | CCCGC | 2 cut(s) | 3404, 3649 |
| FblI | GTMKAC | 2 cut(s) | 1855, 2709 |
| FriOI | GRGCYC | 3 cut(s) | 262, 2979, 3710 |
| GlaI | GCGC | 2 cut(s) | 491, 493 |
| GsuI | CTGGAG | 4 cut(s) | 428, 440, 1660, 4067 |
| HaeIII | GGCC | 7 cut(s) | 153, 248, 1025, 1353, 2047, 2588, 3056 |
| HapII | CCGG | 4 cut(s) | 228, 249, 256, 1250 |
| HhaI | GCGC | 2 cut(s) | 492, 494 |
| Hin6I | GCGC | 2 cut(s) | 490, 492 |
| HinP1I | GCGC | 2 cut(s) | 490, 492 |
| HincII | GTYRAC | 2 cut(s) | 1588, 2383 |
| HindII | GTYRAC | 2 cut(s) | 1588, 2383 |
| HindIII | AAGCTT | 3 cut(s) | 1755, 2747, 4061 |
| HpaII | CCGG | 4 cut(s) | 228, 249, 256, 1250 |
| Hpy188III | TCNNGA | 8 cut(s) | 407, 419, 649, 1613, 3112, 3391, 3482, 3700 |
| HpyCH4IV | ACGT | 4 cut(s) | 675, 2319, 2562, 3943 |
| HpySE526I | ACGT | 4 cut(s) | 675, 2319, 2562, 3943 |
| HspAI | GCGC | 2 cut(s) | 490, 492 |
| Kzo9I | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| LguI | GCTCTTC | 1 cut(s) | 3671 |
| LweI | GCATC | 6 cut(s) | 1997, 2162, 2437, 2476, 3175, 3903 |
| MaeII | ACGT | 4 cut(s) | 675, 2319, 2562, 3943 |
| MalI | GATC | 6 cut(s) | 527, 2286, 2630, 2795, 3140, 3296 |
| MbiI | CCGCTC | 1 cut(s) | 3411 |
| MboI | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| MfeI | CAATTG | 3 cut(s) | 335, 687, 3281 |
| MflI | RGATCY | 1 cut(s) | 3294 |
| MhlI | GDGCHC | 5 cut(s) | 262, 1637, 2979, 3683, 3710 |
| MmeI | TCCRAC | 3 cut(s) | 240, 1182, 1449 |
| Mph1103I | ATGCAT | 3 cut(s) | 2012, 3697, 3918 |
| MroXI | GAANNNNTTC | 4 cut(s) | 642, 1620, 1665, 2577 |
| MslI | CAYNNNNRTG | 6 cut(s) | 395, 533, 632, 1095, 1169, 2187 |
| MspA1I | CMGCKG | 4 cut(s) | 147, 201, 927, 2235 |
| MspCI | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| MspI | CCGG | 4 cut(s) | 228, 249, 256, 1250 |
| MspR9I | CCNGG | 4 cut(s) | 257, 967, 1639, 3384 |
| MunI | CAATTG | 3 cut(s) | 335, 687, 3281 |
| Mva1269I | GAATGC | 2 cut(s) | 2906, 3695 |
| MvaI | CCWGG | 3 cut(s) | 967, 1639, 3384 |
| MvnI | CGCG | 1 cut(s) | 492 |
| NciI | CCSGG | 1 cut(s) | 257 |
| NcoI | CCATGG | 1 cut(s) | 2589 |
| NdeII | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| NlaIV | GGNNCC | 1 cut(s) | 3583 |
| NmeAIII | GCCGAG | 2 cut(s) | 179, 1915 |
| NmuCI | GTSAC | 8 cut(s) | 251, 625, 811, 929, 941, 1496, 2429, 3872 |
| NsiI | ATGCAT | 3 cut(s) | 2012, 3697, 3918 |
| NspI | RCATGY | 7 cut(s) | 112, 803, 1096, 2014, 2192, 3235, 3523 |
| NspV | TTCGAA | 2 cut(s) | 1703, 3398 |
| OliI | CACNNNNGTG | 2 cut(s) | 632, 1095 |
| PacI | TTAATTAA | 1 cut(s) | 33 |
| PaeI | GCATGC | 3 cut(s) | 112, 803, 2014 |
| PaeR7I | CTCGAG | 3 cut(s) | 570, 2509, 3030 |
| PagI | TCATGA | 1 cut(s) | 3699 |
| PauI | GCGCGC | 1 cut(s) | 490 |
| PceI | AGGCCT | 2 cut(s) | 1353, 3056 |
| PciI | ACATGT | 3 cut(s) | 1092, 3231, 3519 |
| PciSI | GCTCTTC | 1 cut(s) | 3671 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1864 |
| PctI | GAATGC | 2 cut(s) | 2906, 3695 |
| PdmI | GAANNNNTTC | 4 cut(s) | 642, 1620, 1665, 2577 |
| PfeI | GAWTC | 8 cut(s) | 238, 415, 580, 643, 2029, 2844, 3209, 3370 |
| Pfl23II | CGTACG | 1 cut(s) | 1985 |
| PflFI | GACNNNGTC | 1 cut(s) | 1494 |
| PinAI | ACCGGT | 1 cut(s) | 227 |
| Ppu21I | YACGTR | 2 cut(s) | 676, 2563 |
| PpuMI | RGGWCCY | 1 cut(s) | 1465 |
| PscI | ACATGT | 3 cut(s) | 1092, 3231, 3519 |
| PshBI | ATTAAT | 2 cut(s) | 29, 33 |
| PsiI | TTATAA | 1 cut(s) | 2991 |
| Psp124BI | GAGCTC | 2 cut(s) | 2979, 3710 |
| Psp5II | RGGWCCY | 1 cut(s) | 1465 |
| Psp6I | CCWGG | 3 cut(s) | 965, 1637, 3382 |
| PspEI | GGTNACC | 2 cut(s) | 251, 1551 |
| PspGI | CCWGG | 3 cut(s) | 965, 1637, 3382 |
| PspLI | CGTACG | 1 cut(s) | 1985 |
| PspN4I | GGNNCC | 1 cut(s) | 3583 |
| PspPI | GGNCC | 3 cut(s) | 1465, 1685, 3582 |
| PspPPI | RGGWCCY | 1 cut(s) | 1465 |
| PspXI | VCTCGAGB | 3 cut(s) | 570, 2509, 3030 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2358, 2390 |
| PstI | CTGCAG | 1 cut(s) | 3790 |
| PstNI | CAGNNNCTG | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 3294 |
| PsyI | GACNNNGTC | 1 cut(s) | 1494 |
| PteI | GCGCGC | 1 cut(s) | 490 |
| RseI | CAYNNNNRTG | 6 cut(s) | 395, 533, 632, 1095, 1169, 2187 |
| SacI | GAGCTC | 2 cut(s) | 2979, 3710 |
| SapI | GCTCTTC | 1 cut(s) | 3671 |
| Sau3AI | GATC | 6 cut(s) | 525, 2284, 2628, 2793, 3138, 3294 |
| Sau96I | GGNCC | 3 cut(s) | 1465, 1685, 3582 |
| ScaI | AGTACT | 1 cut(s) | 3366 |
| ScrFI | CCNGG | 4 cut(s) | 257, 967, 1639, 3384 |
| SduI | GDGCHC | 5 cut(s) | 262, 1637, 2979, 3683, 3710 |
| SfaNI | GCATC | 6 cut(s) | 1997, 2162, 2437, 2476, 3175, 3903 |
| SfcI | CTRYAG | 3 cut(s) | 1286, 3375, 3786 |
| Sfr274I | CTCGAG | 3 cut(s) | 570, 2509, 3030 |
| SfuI | TTCGAA | 2 cut(s) | 1703, 3398 |
| SinI | GGWCC | 3 cut(s) | 1465, 1685, 3582 |
| SlaI | CTCGAG | 3 cut(s) | 570, 2509, 3030 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 395, 533, 632, 1095, 1169, 2187 |
| SmlI | CTYRAG | 8 cut(s) | 570, 1270, 2425, 2503, 2509, 3030, 3064, 3955 |
| SmoI | CTYRAG | 8 cut(s) | 570, 1270, 2425, 2503, 2509, 3030, 3064, 3955 |
| SpeI | ACTAGT | 2 cut(s) | 1835, 2377 |
| SphI | GCATGC | 3 cut(s) | 112, 803, 2014 |
| SseBI | AGGCCT | 2 cut(s) | 1353, 3056 |
| SsiI | CCGC | 9 cut(s) | 147, 150, 201, 204, 925, 2235, 3411, 3656, 3716 |
| SspI | AATATT | 1 cut(s) | 1039 |
| SstI | GAGCTC | 2 cut(s) | 2979, 3710 |
| StuI | AGGCCT | 2 cut(s) | 1353, 3056 |
| StyD4I | CCNGG | 4 cut(s) | 255, 965, 1637, 3382 |
| StyI | CCWWGG | 3 cut(s) | 699, 2589, 3969 |
| TaiI | ACGT | 4 cut(s) | 678, 2322, 2565, 3946 |
| TaqII | GACCGA | 4 cut(s) | 929, 1484, 1881, 2639 |
| TatI | WGTACW | 3 cut(s) | 3364, 3462, 3857 |
| TauI | GCSGC | 3 cut(s) | 150, 153, 204 |
| TfiI | GAWTC | 8 cut(s) | 238, 415, 580, 643, 2029, 2844, 3209, 3370 |
| TseFI | GTSAC | 8 cut(s) | 251, 625, 811, 929, 941, 1496, 2429, 3872 |
| Tsp45I | GTSAC | 8 cut(s) | 251, 625, 811, 929, 941, 1496, 2429, 3872 |
| TspGWI | ACGGA | 1 cut(s) | 1977 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1494 |
| Vha464I | CTTAAG | 3 cut(s) | 1270, 3064, 3955 |
| VpaK11BI | GGWCC | 3 cut(s) | 1465, 1685, 3582 |
| VspI | ATTAAT | 2 cut(s) | 29, 33 |
| XapI | RAATTY | 2 cut(s) | 1059, 1996 |
| XceI | RCATGY | 7 cut(s) | 112, 803, 1096, 2014, 2192, 3235, 3523 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2040, 2124, 3976 |
| XhoI | CTCGAG | 3 cut(s) | 570, 2509, 3030 |
| XmiI | GTMKAC | 2 cut(s) | 1855, 2709 |
| XmnI | GAANNNNTTC | 4 cut(s) | 642, 1620, 1665, 2577 |
| ZrmI | AGTACT | 1 cut(s) | 3366 |
| Zsp2I | ATGCAT | 3 cut(s) | 2012, 3697, 3918 |