pycom02g00350

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000154
Physical Location & Seq
Reverse (-)
215817 .. 216182
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00350.1

Sequence Viewer

Length: 366 bp
ATGGTGAGTCGATATATGCATAATCCAGGTAAAGAGCATTGGCAAGCAGCTAAATGGATATTGAGATATCTCCATGGTACTCGAGACGTTGGTTTATGCTTTGAGAGAGATGACTCTGGTATTGGTCATTTTGCAGTTGGTTATGTTGATTCAGATTATGCAGGTGATCTGGATGGAAGGAAGTCTACTACAGGCTATGTGTTTACTATGGCTAAAGGGCCAGTTTGTTGGAGGTCCATTTTGCAGTCGTCTGTTGCTTTGTCTACTACAGAGGCTGAATATATGGCAGTTGCTGAAGCTATAAAGGAGGCCATTTGGATACATGGGCTGATTAGAGATTTGGGGGTTGATCAGAAGCAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

6.17

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 152, 349
Acc36I ACCTGC 2 cut(s) 152, 349
AccI GTMKAC 2 cut(s) 185, 263
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 2 cut(s) 50, 299
AluI AGCT 2 cut(s) 50, 299
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 2 cut(s) 275, 293
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 2 cut(s) 218, 309
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 218, 234
AsuHPI GGTGA 2 cut(s) 16, 176
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 169, 201
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 189, 267
BfuAI ACCTGC 2 cut(s) 152, 349
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 218, 234
BmrFI CCNGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 220, 311
BsiHKCI CYCGRG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 220, 311
BsoBI CYCGRG 1 cut(s) 81
Bsp143I GATC 2 cut(s) 166, 349
Bsp19I CCATGG 1 cut(s) 73
BspANI GGCC 2 cut(s) 220, 311
BspMI ACCTGC 2 cut(s) 152, 349
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 166, 349
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 169, 352
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 166, 349
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 189, 267
BstV1I GCAGC 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 220, 311
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 2 cut(s) 152, 349
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 2 cut(s) 275, 293
Cfr13I GGNCC 2 cut(s) 218, 234
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 74, 323
CviJI RGCY 8 cut(s) 50, 195, 212, 220, 275, 299, 311, 328
CviKI_1 RGCY 8 cut(s) 50, 195, 212, 220, 275, 299, 311, 328
CviQI GTAC 1 cut(s) 78
DpnI GATC 2 cut(s) 168, 351
DpnII GATC 2 cut(s) 166, 349
Eco130I CCWWGG 1 cut(s) 73
Eco32I GATATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 25
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 77, 326
FatI CATG 2 cut(s) 73, 322
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 2 cut(s) 185, 263
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 220, 311
Hin1II CATG 2 cut(s) 77, 326
HinfI GANTC 3 cut(s) 7, 113, 149
HphI GGTGA 2 cut(s) 16, 176
Hpy166II GTNNAC 3 cut(s) 186, 204, 264
Hpy188I TCNGA 2 cut(s) 154, 354
Hpy188III TCNNGA 2 cut(s) 83, 170
Hpy8I GTNNAC 3 cut(s) 186, 204, 264
HpyAV CCTTC 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 4 cut(s) 19, 134, 161, 244
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 77, 326
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 166, 349
LpnPI CCDG 8 cut(s) 12, 39, 102, 147, 155, 177, 234, 344
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 1 cut(s) 87
MalI GATC 2 cut(s) 168, 351
MboI GATC 2 cut(s) 166, 349
MlyI GAGTC 2 cut(s) 16, 107
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 225, 265, 301
Mph1103I ATGCAT 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 73
NdeII GATC 2 cut(s) 166, 349
NlaIII CATG 2 cut(s) 77, 326
NsiI ATGCAT 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 81
PaqCI CACCTGC 2 cut(s) 152, 349
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 15, 107
PpsI GAGTC 2 cut(s) 15, 107
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 2 cut(s) 218, 234
PstNI CAGNNNCTG 2 cut(s) 275, 293
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 166, 349
Sau96I GGNCC 2 cut(s) 218, 234
SchI GAGTC 2 cut(s) 16, 107
ScrFI CCNGG 1 cut(s) 27
SetI ASST 7 cut(s) 31, 52, 90, 166, 236, 301, 363
SfcI CTRYAG 2 cut(s) 189, 267
Sfr274I CTCGAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 10, 82
TfiI GAWTC 1 cut(s) 149
TseI GCWGC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 81
XmiI GTMKAC 2 cut(s) 185, 263
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.