Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 35 - 277 | 7.1e-83 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 409 |
| AciI | CCGC | 2 cut(s) | 407, 409 |
| AclWI | GGATC | 4 cut(s) | 17, 257, 298, 758 |
| AcoI | YGGCCR | 1 cut(s) | 222 |
| AcsI | RAATTY | 1 cut(s) | 826 |
| AfaI | GTAC | 6 cut(s) | 206, 341, 497, 786, 837, 920 |
| AflIII | ACRYGT | 1 cut(s) | 687 |
| AhlI | ACTAGT | 1 cut(s) | 989 |
| AjnI | CCWGG | 1 cut(s) | 838 |
| Alw26I | GTCTC | 1 cut(s) | 369 |
| AlwI | GGATC | 4 cut(s) | 17, 257, 298, 758 |
| Ama87I | CYCGRG | 1 cut(s) | 486 |
| AoxI | GGCC | 2 cut(s) | 222, 983 |
| ApeKI | GCWGC | 3 cut(s) | 44, 317, 909 |
| ApoI | RAATTY | 1 cut(s) | 826 |
| AsuHPI | GGTGA | 2 cut(s) | 203, 967 |
| AsuII | TTCGAA | 1 cut(s) | 36 |
| AvaI | CYCGRG | 1 cut(s) | 486 |
| BalI | TGGCCA | 1 cut(s) | 224 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 449, 481 |
| BauI | CACGAG | 1 cut(s) | 312 |
| BbsI | GAAGAC | 1 cut(s) | 1131 |
| BbvI | GCAGC | 3 cut(s) | 31, 304, 921 |
| BccI | CCATC | 1 cut(s) | 324 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 26, 60, 467, 501 |
| BciT130I | CCWGG | 1 cut(s) | 840 |
| BciVI | GTATCC | 1 cut(s) | 224 |
| BcoDI | GTCTC | 1 cut(s) | 369 |
| BcuI | ACTAGT | 1 cut(s) | 989 |
| BfaI | CTAG | 4 cut(s) | 308, 506, 933, 990 |
| BfuI | GTATCC | 1 cut(s) | 224 |
| BisI | GCNGC | 3 cut(s) | 45, 318, 910 |
| BlsI | GCNGC | 3 cut(s) | 46, 319, 911 |
| Bme1390I | CCNGG | 1 cut(s) | 840 |
| BmeT110I | CYCGRG | 1 cut(s) | 486 |
| BmiI | GGNNCC | 1 cut(s) | 1039 |
| BmrFI | CCNGG | 1 cut(s) | 840 |
| BmsI | GCATC | 2 cut(s) | 871, 1006 |
| BpiI | GAAGAC | 1 cut(s) | 1131 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| Bpu14I | TTCGAA | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 2 cut(s) | 437, 458 |
| Bsa29I | ATCGAT | 1 cut(s) | 1142 |
| BsaBI | GATNNNNATC | 1 cut(s) | 755 |
| BsaJI | CCNNGG | 3 cut(s) | 225, 407, 485 |
| BsaWI | WCCGGW | 2 cut(s) | 274, 1128 |
| Bse1I | ACTGG | 2 cut(s) | 634, 1041 |
| Bse3DI | GCAATG | 1 cut(s) | 78 |
| Bse8I | GATNNNNATC | 1 cut(s) | 755 |
| BseBI | CCWGG | 1 cut(s) | 840 |
| BseCI | ATCGAT | 1 cut(s) | 1142 |
| BseDI | CCNNGG | 3 cut(s) | 225, 407, 485 |
| BseGI | GGATG | 1 cut(s) | 335 |
| BseJI | GATNNNNATC | 1 cut(s) | 755 |
| BseMI | GCAATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 1110 |
| BseNI | ACTGG | 2 cut(s) | 634, 1041 |
| BseRI | GAGGAG | 1 cut(s) | 474 |
| BseXI | GCAGC | 3 cut(s) | 31, 304, 921 |
| Bsh1236I | CGCG | 1 cut(s) | 409 |
| BshFI | GGCC | 2 cut(s) | 224, 985 |
| BshVI | ATCGAT | 1 cut(s) | 1142 |
| BsiHKCI | CYCGRG | 1 cut(s) | 486 |
| BsiSI | CCGG | 3 cut(s) | 275, 1113, 1129 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BsmAI | GTCTC | 1 cut(s) | 369 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 2 cut(s) | 224, 985 |
| BsoBI | CYCGRG | 1 cut(s) | 486 |
| Bsp119I | TTCGAA | 1 cut(s) | 36 |
| Bsp143I | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| BspACI | CCGC | 2 cut(s) | 407, 409 |
| BspANI | GGCC | 2 cut(s) | 224, 985 |
| BspCNI | CTCAG | 1 cut(s) | 1109 |
| BspDI | ATCGAT | 1 cut(s) | 1142 |
| BspFNI | CGCG | 1 cut(s) | 409 |
| BspHI | TCATGA | 1 cut(s) | 975 |
| BspLI | GGNNCC | 1 cut(s) | 1039 |
| BspPI | GGATC | 4 cut(s) | 17, 257, 298, 758 |
| BspT104I | TTCGAA | 1 cut(s) | 36 |
| BsrDI | GCAATG | 1 cut(s) | 78 |
| BsrI | ACTGG | 2 cut(s) | 634, 1041 |
| BssECI | CCNNGG | 3 cut(s) | 225, 407, 485 |
| BssMI | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| BssSI | CACGAG | 1 cut(s) | 312 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst2BI | CACGAG | 1 cut(s) | 312 |
| Bst2UI | CCWGG | 1 cut(s) | 840 |
| Bst6I | CTCTTC | 3 cut(s) | 648, 1007, 1071 |
| BstBI | TTCGAA | 1 cut(s) | 36 |
| BstC8I | GCNNGC | 3 cut(s) | 322, 480, 503 |
| BstDEI | CTNAG | 3 cut(s) | 545, 1096, 1164 |
| BstDSI | CCRYGG | 1 cut(s) | 407 |
| BstF5I | GGATG | 1 cut(s) | 335 |
| BstFNI | CGCG | 1 cut(s) | 409 |
| BstKTI | GATC | 7 cut(s) | 25, 252, 306, 619, 697, 753, 1146 |
| BstMAI | GTCTC | 1 cut(s) | 369 |
| BstMBI | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 278, 317, 488 |
| BstNI | CCWGG | 1 cut(s) | 840 |
| BstNSI | RCATGY | 1 cut(s) | 691 |
| BstSCI | CCNGG | 1 cut(s) | 838 |
| BstUI | CGCG | 1 cut(s) | 409 |
| BstV1I | GCAGC | 3 cut(s) | 31, 304, 921 |
| BstV2I | GAAGAC | 1 cut(s) | 1131 |
| BstX2I | RGATCY | 1 cut(s) | 750 |
| BstYI | RGATCY | 1 cut(s) | 750 |
| Bsu15I | ATCGAT | 1 cut(s) | 1142 |
| BsuI | GTATCC | 1 cut(s) | 224 |
| BsuRI | GGCC | 2 cut(s) | 224, 985 |
| BsuTUI | ATCGAT | 1 cut(s) | 1142 |
| BtgI | CCRYGG | 1 cut(s) | 407 |
| BtsCI | GGATG | 1 cut(s) | 335 |
| BtsI | GCAGTG | 1 cut(s) | 1014 |
| BtsIMutI | CAGTG | 2 cut(s) | 1014, 1048 |
| Cac8I | GCNNGC | 3 cut(s) | 322, 480, 503 |
| CciI | TCATGA | 1 cut(s) | 975 |
| Cfr42I | CCGCGG | 1 cut(s) | 410 |
| ClaI | ATCGAT | 1 cut(s) | 1142 |
| CseI | GACGC | 1 cut(s) | 797 |
| CsiI | ACCWGGT | 1 cut(s) | 838 |
| Csp6I | GTAC | 6 cut(s) | 205, 340, 496, 785, 836, 919 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 201, 236, 1051, 1086 |
| CviAII | CATG | 7 cut(s) | 111, 245, 371, 492, 688, 802, 976 |
| CviQI | GTAC | 6 cut(s) | 205, 340, 496, 785, 836, 919 |
| DdeI | CTNAG | 3 cut(s) | 545, 1096, 1164 |
| DpnI | GATC | 7 cut(s) | 24, 251, 305, 618, 696, 752, 1145 |
| DpnII | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| EaeI | YGGCCR | 1 cut(s) | 222 |
| Eam1104I | CTCTTC | 3 cut(s) | 648, 1007, 1071 |
| EarI | CTCTTC | 3 cut(s) | 648, 1007, 1071 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| Eco88I | CYCGRG | 1 cut(s) | 486 |
| EcoRII | CCWGG | 1 cut(s) | 838 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| FaeI | CATG | 7 cut(s) | 114, 248, 374, 495, 691, 805, 979 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 201, 233, 515, 547, 737, 769 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 7 cut(s) | 110, 244, 370, 491, 687, 801, 975 |
| FauI | CCCGC | 1 cut(s) | 402 |
| FauNDI | CATATG | 2 cut(s) | 296, 949 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 318, 910 |
| FokI | GGATG | 1 cut(s) | 342 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 318, 910 |
| FspBI | CTAG | 4 cut(s) | 308, 506, 933, 990 |
| GluI | GCNGC | 3 cut(s) | 45, 318, 910 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 2 cut(s) | 224, 985 |
| HapII | CCGG | 3 cut(s) | 275, 1113, 1129 |
| HgaI | GACGC | 1 cut(s) | 797 |
| Hin1II | CATG | 7 cut(s) | 114, 248, 374, 495, 691, 805, 979 |
| HinfI | GANTC | 5 cut(s) | 52, 471, 509, 972, 1053 |
| HpaII | CCGG | 3 cut(s) | 275, 1113, 1129 |
| HphI | GGTGA | 2 cut(s) | 203, 967 |
| Hpy166II | GTNNAC | 4 cut(s) | 9, 340, 564, 848 |
| Hpy188I | TCNGA | 2 cut(s) | 57, 1099 |
| Hpy188III | TCNNGA | 4 cut(s) | 454, 520, 661, 976 |
| Hpy8I | GTNNAC | 4 cut(s) | 9, 340, 564, 848 |
| HpyAV | CCTTC | 8 cut(s) | 181, 320, 418, 451, 517, 521, 572, 857 |
| HpyCH4V | TGCA | 4 cut(s) | 736, 776, 884, 997 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 278, 317, 488 |
| HpyF3I | CTNAG | 3 cut(s) | 545, 1096, 1164 |
| Hsp92II | CATG | 7 cut(s) | 114, 248, 374, 495, 691, 805, 979 |
| KspI | CCGCGG | 1 cut(s) | 410 |
| Kzo9I | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| LmnI | GCTCC | 4 cut(s) | 76, 277, 487, 805 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 304, 921 |
| LweI | GCATC | 2 cut(s) | 871, 1006 |
| MabI | ACCWGGT | 1 cut(s) | 838 |
| MaeI | CTAG | 4 cut(s) | 308, 506, 933, 990 |
| MaeIII | GTNAC | 1 cut(s) | 809 |
| MalI | GATC | 7 cut(s) | 24, 251, 305, 618, 696, 752, 1145 |
| MboI | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| MboII | GAAGA | 9 cut(s) | 50, 359, 443, 587, 665, 745, 1024, 1088, 1136 |
| MfeI | CAATTG | 1 cut(s) | 831 |
| MflI | RGATCY | 1 cut(s) | 750 |
| MlsI | TGGCCA | 1 cut(s) | 224 |
| MluCI | AATT | 4 cut(s) | 116, 814, 826, 831 |
| MluNI | TGGCCA | 1 cut(s) | 224 |
| MlyI | GAGTC | 3 cut(s) | 61, 465, 518 |
| MnlI | CCTC | 7 cut(s) | 25, 51, 495, 575, 775, 1008, 1061 |
| Mox20I | TGGCCA | 1 cut(s) | 224 |
| MscI | TGGCCA | 1 cut(s) | 224 |
| MseI | TTAA | 6 cut(s) | 168, 179, 354, 380, 822, 1031 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| Msp20I | TGGCCA | 1 cut(s) | 224 |
| MspA1I | CMGCKG | 2 cut(s) | 134, 409 |
| MspI | CCGG | 3 cut(s) | 275, 1113, 1129 |
| MspR9I | CCNGG | 1 cut(s) | 840 |
| MunI | CAATTG | 1 cut(s) | 831 |
| MvaI | CCWGG | 1 cut(s) | 840 |
| MvnI | CGCG | 1 cut(s) | 409 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 278, 317, 488 |
| NdeI | CATATG | 2 cut(s) | 296, 949 |
| NdeII | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| NlaIII | CATG | 7 cut(s) | 114, 248, 374, 495, 691, 805, 979 |
| NlaIV | GGNNCC | 1 cut(s) | 1039 |
| NmuCI | GTSAC | 1 cut(s) | 809 |
| NspI | RCATGY | 1 cut(s) | 691 |
| NspV | TTCGAA | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 975 |
| PciI | ACATGT | 1 cut(s) | 687 |
| PfeI | GAWTC | 2 cut(s) | 972, 1053 |
| PkrI | GCNGC | 3 cut(s) | 46, 319, 911 |
| PleI | GAGTC | 3 cut(s) | 60, 465, 517 |
| PpsI | GAGTC | 3 cut(s) | 60, 465, 517 |
| PscI | ACATGT | 1 cut(s) | 687 |
| Psp6I | CCWGG | 1 cut(s) | 838 |
| PspGI | CCWGG | 1 cut(s) | 838 |
| PspN4I | GGNNCC | 1 cut(s) | 1039 |
| PsuI | RGATCY | 1 cut(s) | 750 |
| PvuII | CAGCTG | 1 cut(s) | 134 |
| RsaI | GTAC | 6 cut(s) | 206, 341, 497, 786, 837, 920 |
| RsaNI | GTAC | 6 cut(s) | 205, 340, 496, 785, 836, 919 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SacII | CCGCGG | 1 cut(s) | 410 |
| SaqAI | TTAA | 6 cut(s) | 168, 179, 354, 380, 822, 1031 |
| SatI | GCNGC | 3 cut(s) | 45, 318, 910 |
| Sau3AI | GATC | 7 cut(s) | 22, 249, 303, 616, 694, 750, 1143 |
| SchI | GAGTC | 3 cut(s) | 61, 465, 518 |
| ScrFI | CCNGG | 1 cut(s) | 840 |
| SexAI | ACCWGGT | 1 cut(s) | 838 |
| SfaNI | GCATC | 2 cut(s) | 871, 1006 |
| Sfr303I | CCGCGG | 1 cut(s) | 410 |
| SfuI | TTCGAA | 1 cut(s) | 36 |
| SgrBI | CCGCGG | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| SmlI | CTYRAG | 2 cut(s) | 452, 473 |
| SmoI | CTYRAG | 2 cut(s) | 452, 473 |
| SpeI | ACTAGT | 1 cut(s) | 989 |
| Sse9I | AATT | 4 cut(s) | 116, 814, 826, 831 |
| SsiI | CCGC | 2 cut(s) | 407, 409 |
| SspMI | CTAG | 4 cut(s) | 308, 506, 933, 990 |
| StyD4I | CCNGG | 1 cut(s) | 838 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaqI | TCGA | 4 cut(s) | 36, 252, 348, 1142 |
| TasI | AATT | 4 cut(s) | 116, 814, 826, 831 |
| TatI | WGTACW | 2 cut(s) | 204, 918 |
| TfiI | GAWTC | 2 cut(s) | 972, 1053 |
| Tru1I | TTAA | 6 cut(s) | 168, 179, 354, 380, 822, 1031 |
| Tru9I | TTAA | 6 cut(s) | 168, 179, 354, 380, 822, 1031 |
| TscAI | CASTG | 2 cut(s) | 1014, 1048 |
| TseFI | GTSAC | 1 cut(s) | 809 |
| TseI | GCWGC | 3 cut(s) | 44, 317, 909 |
| Tsp45I | GTSAC | 1 cut(s) | 809 |
| TspGWI | ACGGA | 1 cut(s) | 483 |
| TspRI | CASTG | 2 cut(s) | 1014, 1048 |
| XapI | RAATTY | 1 cut(s) | 826 |
| XceI | RCATGY | 1 cut(s) | 691 |
| XspI | CTAG | 4 cut(s) | 308, 506, 933, 990 |