FvH4_1g18383

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
10694312 .. 10695478
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18383.t1

Sequence Viewer

Length: 1167 bp
ATGATGTTTACTGCCTCCAATGATCCTGTGTCATTCGAAGAAGCTGCCAAGAGTCAGAGGTGGAGAGAAGCAATGGAGCAGGAGATTGAAGCTATTGAGAAAAATGGAACATGGGAATTGACTACTTTACCAGCTGGAGTGAAAAGGATAAGAGTAAAATGGGTGTTTAAGACCAAGTTAAATGAGAAGGGTGATGTTGAAAAGTACAAAGCAAGGCTTGTGGCCAAGGGATACACACAACAGCATGGGATCGACTATAATGAAATCTTTGCTCCGGTTGCTCGTTGGGACACCATATGTATGATCCTAGCTCGTGCTGCTTGCGAAGGATGGAGTGTGTACCAGCTCGATGTTAAGAGTGCTTTTCTTCATGGAGACTTAAATGAAGCTGTGTTTGTTGAGCAACCGCGGGGCTTTGAAGTGAAGGGGGAAGAAAACAAAGTATATAAGCTCAAGAAGGCGTTATACGGACTCAAGCAAGCTCCTCGGGCATGGTACAGCAAGCTAGAGTCTTATTTCTTGAAGGAAGGCTTTGAAAGGTGTCTTAGTGAGCATACTCTGTTTACAAAGGCAGAAGAAGGAGGGAAGTTGCTTGTGGTAGGTGTGTATGTTGATGATCTTATCTTTACTGGAAACGATGAAGCTATGTTTGAAGAGTTCAAGAGTTCTATGAAACGAGAGTTTGACATGTTTGATCTTGGGAGAATGAAATACTTTCTCGGTGTGGAAGTAGTGCAAGGCAGTAAGGGGATCTTCATCAACCAAAAGAAATATGCAAATGAGGTACTTGAAAGGTTTGGCATGGAGCGTCACAATTCAGTTAAAAATTCAATTGTACCAGGTTGTAAACTTGTGAAAGATGAAGGTGGAGTTGTTTTTGATGCAACTACTTACAAGCAAATGGTGGGCAGCCTTATGTACTTGACTGCCACTAGACCCGACTTGGCATATGTGGTGAGCCTAATAAGTAGATTCATGAAAAGGCCAACTAGTTTGCATCATCAAGCAGTGAAGAGGGTATTTCATTATTTAAGGGGAACCAGTGAGTTTGGAATCTTTTACAAAAGAGGTGGAGAAGAGAAGTTAGTAGCCTACTCAGATAGCGATTATGCCGGAGATGTTGAAGACCGGAAAAGCACATCGATCAGGGTATGTGTTCTTGCTTAG

Protein Analysis

389

Amino Acids

44.45

Weight (kDa)

8.53

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 35 - 277 7.1e-83 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 409
AciI CCGC 2 cut(s) 407, 409
AclWI GGATC 4 cut(s) 17, 257, 298, 758
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 826
AfaI GTAC 6 cut(s) 206, 341, 497, 786, 837, 920
AflIII ACRYGT 1 cut(s) 687
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 1 cut(s) 838
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 4 cut(s) 17, 257, 298, 758
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 2 cut(s) 222, 983
ApeKI GCWGC 3 cut(s) 44, 317, 909
ApoI RAATTY 1 cut(s) 826
AsuHPI GGTGA 2 cut(s) 203, 967
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 486
BalI TGGCCA 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 1131
BbvI GCAGC 3 cut(s) 31, 304, 921
BccI CCATC 1 cut(s) 324
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 467, 501
BciT130I CCWGG 1 cut(s) 840
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 369
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 4 cut(s) 308, 506, 933, 990
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 3 cut(s) 45, 318, 910
BlsI GCNGC 3 cut(s) 46, 319, 911
Bme1390I CCNGG 1 cut(s) 840
BmeT110I CYCGRG 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 1039
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 2 cut(s) 871, 1006
BpiI GAAGAC 1 cut(s) 1131
BpmI CTGGAG 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 437, 458
Bsa29I ATCGAT 1 cut(s) 1142
BsaBI GATNNNNATC 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 225, 407, 485
BsaWI WCCGGW 2 cut(s) 274, 1128
Bse1I ACTGG 2 cut(s) 634, 1041
Bse3DI GCAATG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 1 cut(s) 840
BseCI ATCGAT 1 cut(s) 1142
BseDI CCNNGG 3 cut(s) 225, 407, 485
BseGI GGATG 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 755
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 1110
BseNI ACTGG 2 cut(s) 634, 1041
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 3 cut(s) 31, 304, 921
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 224, 985
BshVI ATCGAT 1 cut(s) 1142
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 3 cut(s) 275, 1113, 1129
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 224, 985
BsoBI CYCGRG 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 36
Bsp143I GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
BspACI CCGC 2 cut(s) 407, 409
BspANI GGCC 2 cut(s) 224, 985
BspCNI CTCAG 1 cut(s) 1109
BspDI ATCGAT 1 cut(s) 1142
BspFNI CGCG 1 cut(s) 409
BspHI TCATGA 1 cut(s) 975
BspLI GGNNCC 1 cut(s) 1039
BspPI GGATC 4 cut(s) 17, 257, 298, 758
BspT104I TTCGAA 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 2 cut(s) 634, 1041
BssECI CCNNGG 3 cut(s) 225, 407, 485
BssMI GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 840
Bst6I CTCTTC 3 cut(s) 648, 1007, 1071
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 322, 480, 503
BstDEI CTNAG 3 cut(s) 545, 1096, 1164
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 409
BstKTI GATC 7 cut(s) 25, 252, 306, 619, 697, 753, 1146
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
BstMWI GCNNNNNNNGC 3 cut(s) 278, 317, 488
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 838
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 31, 304, 921
BstV2I GAAGAC 1 cut(s) 1131
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
Bsu15I ATCGAT 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 224, 985
BsuTUI ATCGAT 1 cut(s) 1142
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 2 cut(s) 1014, 1048
Cac8I GCNNGC 3 cut(s) 322, 480, 503
CciI TCATGA 1 cut(s) 975
Cfr42I CCGCGG 1 cut(s) 410
ClaI ATCGAT 1 cut(s) 1142
CseI GACGC 1 cut(s) 797
CsiI ACCWGGT 1 cut(s) 838
Csp6I GTAC 6 cut(s) 205, 340, 496, 785, 836, 919
CspCI CAANNNNNGTGG 4 cut(s) 201, 236, 1051, 1086
CviAII CATG 7 cut(s) 111, 245, 371, 492, 688, 802, 976
CviQI GTAC 6 cut(s) 205, 340, 496, 785, 836, 919
DdeI CTNAG 3 cut(s) 545, 1096, 1164
DpnI GATC 7 cut(s) 24, 251, 305, 618, 696, 752, 1145
DpnII GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 648, 1007, 1071
EarI CTCTTC 3 cut(s) 648, 1007, 1071
Eco130I CCWWGG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 7 cut(s) 114, 248, 374, 495, 691, 805, 979
FalI AAGNNNNNCTT 6 cut(s) 201, 233, 515, 547, 737, 769
FaqI GGGAC 1 cut(s) 302
FatI CATG 7 cut(s) 110, 244, 370, 491, 687, 801, 975
FauI CCCGC 1 cut(s) 402
FauNDI CATATG 2 cut(s) 296, 949
Fnu4HI GCNGC 3 cut(s) 45, 318, 910
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 3 cut(s) 45, 318, 910
FspBI CTAG 4 cut(s) 308, 506, 933, 990
GluI GCNGC 3 cut(s) 45, 318, 910
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 224, 985
HapII CCGG 3 cut(s) 275, 1113, 1129
HgaI GACGC 1 cut(s) 797
Hin1II CATG 7 cut(s) 114, 248, 374, 495, 691, 805, 979
HinfI GANTC 5 cut(s) 52, 471, 509, 972, 1053
HpaII CCGG 3 cut(s) 275, 1113, 1129
HphI GGTGA 2 cut(s) 203, 967
Hpy166II GTNNAC 4 cut(s) 9, 340, 564, 848
Hpy188I TCNGA 2 cut(s) 57, 1099
Hpy188III TCNNGA 4 cut(s) 454, 520, 661, 976
Hpy8I GTNNAC 4 cut(s) 9, 340, 564, 848
HpyAV CCTTC 8 cut(s) 181, 320, 418, 451, 517, 521, 572, 857
HpyCH4V TGCA 4 cut(s) 736, 776, 884, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 317, 488
HpyF3I CTNAG 3 cut(s) 545, 1096, 1164
Hsp92II CATG 7 cut(s) 114, 248, 374, 495, 691, 805, 979
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
LmnI GCTCC 4 cut(s) 76, 277, 487, 805
Lsp1109I GCAGC 3 cut(s) 31, 304, 921
LweI GCATC 2 cut(s) 871, 1006
MabI ACCWGGT 1 cut(s) 838
MaeI CTAG 4 cut(s) 308, 506, 933, 990
MaeIII GTNAC 1 cut(s) 809
MalI GATC 7 cut(s) 24, 251, 305, 618, 696, 752, 1145
MboI GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
MboII GAAGA 9 cut(s) 50, 359, 443, 587, 665, 745, 1024, 1088, 1136
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 750
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 4 cut(s) 116, 814, 826, 831
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 3 cut(s) 61, 465, 518
MnlI CCTC 7 cut(s) 25, 51, 495, 575, 775, 1008, 1061
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 6 cut(s) 168, 179, 354, 380, 822, 1031
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 134, 409
MspI CCGG 3 cut(s) 275, 1113, 1129
MspR9I CCNGG 1 cut(s) 840
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 3 cut(s) 278, 317, 488
NdeI CATATG 2 cut(s) 296, 949
NdeII GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
NlaIII CATG 7 cut(s) 114, 248, 374, 495, 691, 805, 979
NlaIV GGNNCC 1 cut(s) 1039
NmuCI GTSAC 1 cut(s) 809
NspI RCATGY 1 cut(s) 691
NspV TTCGAA 1 cut(s) 36
PagI TCATGA 1 cut(s) 975
PciI ACATGT 1 cut(s) 687
PfeI GAWTC 2 cut(s) 972, 1053
PkrI GCNGC 3 cut(s) 46, 319, 911
PleI GAGTC 3 cut(s) 60, 465, 517
PpsI GAGTC 3 cut(s) 60, 465, 517
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 1 cut(s) 1039
PsuI RGATCY 1 cut(s) 750
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 6 cut(s) 206, 341, 497, 786, 837, 920
RsaNI GTAC 6 cut(s) 205, 340, 496, 785, 836, 919
RseI CAYNNNNRTG 1 cut(s) 299
SacII CCGCGG 1 cut(s) 410
SaqAI TTAA 6 cut(s) 168, 179, 354, 380, 822, 1031
SatI GCNGC 3 cut(s) 45, 318, 910
Sau3AI GATC 7 cut(s) 22, 249, 303, 616, 694, 750, 1143
SchI GAGTC 3 cut(s) 61, 465, 518
ScrFI CCNGG 1 cut(s) 840
SexAI ACCWGGT 1 cut(s) 838
SfaNI GCATC 2 cut(s) 871, 1006
Sfr303I CCGCGG 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 452, 473
SmoI CTYRAG 2 cut(s) 452, 473
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 4 cut(s) 116, 814, 826, 831
SsiI CCGC 2 cut(s) 407, 409
SspMI CTAG 4 cut(s) 308, 506, 933, 990
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 4 cut(s) 36, 252, 348, 1142
TasI AATT 4 cut(s) 116, 814, 826, 831
TatI WGTACW 2 cut(s) 204, 918
TfiI GAWTC 2 cut(s) 972, 1053
Tru1I TTAA 6 cut(s) 168, 179, 354, 380, 822, 1031
Tru9I TTAA 6 cut(s) 168, 179, 354, 380, 822, 1031
TscAI CASTG 2 cut(s) 1014, 1048
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 3 cut(s) 44, 317, 909
Tsp45I GTSAC 1 cut(s) 809
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 2 cut(s) 1014, 1048
XapI RAATTY 1 cut(s) 826
XceI RCATGY 1 cut(s) 691
XspI CTAG 4 cut(s) 308, 506, 933, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.