FvH4_2g08148

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000154
Physical Location & Seq
Forward (+)
7119613 .. 7120445
833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08148.t1

Sequence Viewer

Length: 759 bp
ATGTTTGAGAGCAAGGCAGTAGCAACTCCAATTGTACCAGGAACGAAAGTTTCAAAGGATGAAGAAGGCATAGCAATTGATGAGACTTTCTACAAACAGATGATTGGTAGCATGATGTACCTGACCTCAACTCATCCAGACCTGATGTTTGTAACAAGCTTACTCAGCCGGTACATGTCTAAACCCACTGAGTTACATCTACAAGTTGCAAAGAGAGCTTTGAGGTATTTAAAGGGGACTGTTAACTATGGCATCTATTACAAGAATAATGGAGAAGATGGTGAGCTTCTAGGTTACACATATAGCGACTATGCCGGCGACAATGATGATAGGAGAAGCACCAGTGGATATGCATTCATGTTAAGCTCCGGTGCTGTGTCTTGGAGTTCAAAGAAGCAACCTATAGTAACATTGTCCACCACCGAAGTTGAATTTGTAGCTGCTGCAACTTGTGCATGTCAAGCTATATGGTTGAAGAGGATTCTGAAAAAACTTGAACATGAAGACAAGCCTTGCACGAGTATCATGTGTGATAACAGCTTAACAATCAAGTTGTCAAAGAACCCTGTCCTTTATGGAAGAAGCAAACACATAGATGTGAGGTACCACTTTCTTCAAGATGTCACAACGCAAGGAGAAATCTCGCTAACTTACTATGGAACTACTGAGCAGCTAGCAGACATCATGACCAAGCCACTGAAGACTGAGCCTCCACTTATCTTCGAAGCAGGCTTGGAATGTGCGAGATCAAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

253

Amino Acids

28.31

Weight (kDa)

7.6

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 603
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 4 cut(s) 36, 119, 173, 605
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 6 cut(s) 54, 390, 431, 475, 497, 617
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 8 cut(s) 159, 218, 286, 366, 440, 464, 540, 673
AluI AGCT 8 cut(s) 159, 218, 286, 366, 440, 464, 540, 673
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 440, 443, 670
ApoI RAATTY 1 cut(s) 431
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp718I GGTACC 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 723
AsuNHI GCTAGC 1 cut(s) 673
BanI GGYRCC 1 cut(s) 603
BauI CACGAG 1 cut(s) 517
BbsI GAAGAC 2 cut(s) 510, 707
BbvI GCAGC 3 cut(s) 427, 430, 682
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 290, 674
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 3 cut(s) 441, 444, 671
BlsI GCNGC 3 cut(s) 442, 445, 672
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 605
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 261
BmtI GCTAGC 1 cut(s) 677
BpiI GAAGAC 2 cut(s) 510, 707
Bpu14I TTCGAA 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bse118I RCCGGY 2 cut(s) 168, 314
Bse1I ACTGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 64, 133
BseMII CTCAG 4 cut(s) 178, 180, 657, 696
BseNI ACTGG 1 cut(s) 342
BseXI GCAGC 3 cut(s) 427, 430, 682
BshNI GGYRCC 1 cut(s) 603
BsiSI CCGG 3 cut(s) 169, 315, 369
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 723
Bsp143I GATC 1 cut(s) 746
BspCNI CTCAG 4 cut(s) 177, 181, 658, 697
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 605
BspOI GCTAGC 1 cut(s) 677
BspT104I TTCGAA 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 603
BsrFI RCCGGY 2 cut(s) 168, 314
BsrI ACTGG 1 cut(s) 342
BssAI RCCGGY 2 cut(s) 168, 314
BssMI GATC 1 cut(s) 746
BssSI CACGAG 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 452
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 3 cut(s) 316, 675, 730
BstDEI CTNAG 4 cut(s) 164, 189, 666, 705
BstF5I GGATG 2 cut(s) 64, 133
BstKTI GATC 1 cut(s) 749
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 746
BstMWI GCNNNNNNNGC 4 cut(s) 165, 215, 452, 461
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 2 cut(s) 178, 459
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 3 cut(s) 427, 430, 682
BstV2I GAAGAC 2 cut(s) 510, 707
BtsCI GGATG 2 cut(s) 64, 133
BtsIMutI CAGTG 3 cut(s) 186, 349, 695
Cac8I GCNNGC 3 cut(s) 316, 675, 730
CciI TCATGA 1 cut(s) 684
Cfr10I RCCGGY 2 cut(s) 168, 314
Csp6I GTAC 4 cut(s) 35, 118, 172, 604
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 7 cut(s) 112, 175, 358, 456, 500, 526, 685
CviQI GTAC 4 cut(s) 35, 118, 172, 604
DdeI CTNAG 4 cut(s) 164, 189, 666, 705
DpnI GATC 1 cut(s) 748
DpnII GATC 1 cut(s) 746
DraI TTTAAA 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 7 cut(s) 115, 178, 361, 459, 503, 529, 688
FaqI GGGAC 1 cut(s) 250
FatI CATG 7 cut(s) 111, 174, 357, 455, 499, 525, 684
Fnu4HI GCNGC 3 cut(s) 441, 444, 671
FokI GGATG 2 cut(s) 71, 120
Fsp4HI GCNGC 3 cut(s) 441, 444, 671
FspBI CTAG 2 cut(s) 290, 674
GluI GCNGC 3 cut(s) 441, 444, 671
HapII CCGG 3 cut(s) 169, 315, 369
Hin1II CATG 7 cut(s) 115, 178, 361, 459, 503, 529, 688
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 481
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 3 cut(s) 169, 315, 369
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 244, 417
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 3 cut(s) 137, 617, 685
Hpy8I GTNNAC 2 cut(s) 244, 417
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 209, 353, 446, 455, 516
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 215, 452, 461
HpyF3I CTNAG 4 cut(s) 164, 189, 666, 705
Hsp92II CATG 7 cut(s) 115, 178, 361, 459, 503, 529, 688
KpnI GGTACC 1 cut(s) 607
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 1 cut(s) 746
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 427, 430, 682
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 290, 674
MaeIII GTNAC 5 cut(s) 151, 192, 293, 406, 622
MalI GATC 1 cut(s) 748
MboI GATC 1 cut(s) 746
MboII GAAGA 8 cut(s) 74, 287, 487, 515, 591, 605, 712, 712
MfeI CAATTG 2 cut(s) 30, 75
MluCI AATT 3 cut(s) 30, 75, 431
MnlI CCTC 6 cut(s) 136, 216, 471, 594, 720, 747
Mph1103I ATGCAT 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 314
MseI TTAA 4 cut(s) 230, 243, 362, 542
MslI CAYNNNNRTG 2 cut(s) 594, 596
MspI CCGG 3 cut(s) 169, 315, 369
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 2 cut(s) 30, 75
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 165, 215, 452, 461
NaeI GCCGGC 1 cut(s) 316
NdeII GATC 1 cut(s) 746
NgoMIV GCCGGC 1 cut(s) 314
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 7 cut(s) 115, 178, 361, 459, 503, 529, 688
NlaIV GGNNCC 1 cut(s) 605
NmuCI GTSAC 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 2 cut(s) 178, 459
NspV TTCGAA 1 cut(s) 723
PagI TCATGA 1 cut(s) 684
PciI ACATGT 1 cut(s) 174
PctI GAATGC 1 cut(s) 353
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 3 cut(s) 442, 445, 672
PscI ACATGT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 605
RsaI GTAC 4 cut(s) 36, 119, 173, 605
RsaNI GTAC 4 cut(s) 35, 118, 172, 604
RseI CAYNNNNRTG 2 cut(s) 594, 596
SaqAI TTAA 4 cut(s) 230, 243, 362, 542
SatI GCNGC 3 cut(s) 441, 444, 671
Sau3AI GATC 1 cut(s) 746
ScrFI CCNGG 1 cut(s) 39
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 594, 596
Sse9I AATT 3 cut(s) 30, 75, 431
SspMI CTAG 2 cut(s) 290, 674
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 723
TasI AATT 3 cut(s) 30, 75, 431
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 4 cut(s) 230, 243, 362, 542
Tru9I TTAA 4 cut(s) 230, 243, 362, 542
TscAI CASTG 3 cut(s) 193, 349, 702
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 3 cut(s) 440, 443, 670
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 75, 346, 516
TspRI CASTG 3 cut(s) 193, 349, 702
XapI RAATTY 1 cut(s) 431
XceI RCATGY 2 cut(s) 178, 459
XspI CTAG 2 cut(s) 290, 674
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.