Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 26 - 204 | 9.6e-28 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 297 - 376 | 2.9e-29 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 405 - 473 | 1.5e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 488 - 588 | 1.1e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 662 - 724 | 2.6e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 839 - 1003 | 1.8e-55 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 1004 - 1061 | 6.1e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3449 |
| Acc16I | TGCGCA | 1 cut(s) | 3620 |
| Acc36I | ACCTGC | 3 cut(s) | 37, 139, 3449 |
| Acc65I | GGTACC | 1 cut(s) | 1530 |
| AccB1I | GGYRCC | 2 cut(s) | 1530, 3892 |
| AccBSI | CCGCTC | 1 cut(s) | 2373 |
| AccI | GTMKAC | 1 cut(s) | 2856 |
| AciI | CCGC | 4 cut(s) | 1494, 2373, 2819, 3273 |
| AclWI | GGATC | 5 cut(s) | 1955, 2090, 2429, 2496, 2582 |
| AcoI | YGGCCR | 1 cut(s) | 1306 |
| AcsI | RAATTY | 4 cut(s) | 2316, 3000, 3026, 3624 |
| AcuI | CTGAAG | 8 cut(s) | 1103, 1293, 1454, 1950, 2196, 2409, 2694, 3863 |
| AcvI | CACGTG | 1 cut(s) | 2900 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 793, 1175, 1906, 1933, 3279 |
| AflIII | ACRYGT | 2 cut(s) | 1233, 1993 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 64 |
| AhlI | ACTAGT | 1 cut(s) | 659 |
| AjnI | CCWGG | 4 cut(s) | 309, 1568, 3184, 3895 |
| AleI | CACNNNNGTG | 2 cut(s) | 921, 1061 |
| Alw21I | GWGCWC | 6 cut(s) | 337, 527, 822, 864, 2967, 3369 |
| Alw26I | GTCTC | 5 cut(s) | 245, 1018, 3263, 3526, 3864 |
| AlwI | GGATC | 5 cut(s) | 1955, 2090, 2429, 2496, 2582 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1271 |
| AoxI | GGCC | 6 cut(s) | 163, 610, 1306, 1856, 2622, 3281 |
| ApoI | RAATTY | 4 cut(s) | 2316, 3000, 3026, 3624 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 987, 1019 |
| AseI | ATTAAT | 1 cut(s) | 3197 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 938, 1431, 2316, 3078, 3864 |
| Asp718I | GGTACC | 1 cut(s) | 1530 |
| AspLEI | GCGC | 1 cut(s) | 3621 |
| AspS9I | GGNCC | 3 cut(s) | 163, 1496, 1857 |
| AsuC2I | CCSGG | 1 cut(s) | 1076 |
| AsuHPI | GGTGA | 9 cut(s) | 220, 337, 1366, 1684, 2225, 2578, 2615, 3431, 3473 |
| AsuII | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| AvaII | GGWCC | 1 cut(s) | 1496 |
| BaeGI | GKGCMC | 2 cut(s) | 771, 788 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2899, 2932 |
| BalI | TGGCCA | 1 cut(s) | 1308 |
| BanI | GGYRCC | 2 cut(s) | 1530, 3892 |
| BanII | GRGCYC | 4 cut(s) | 317, 822, 864, 1901 |
| BauI | CACGAG | 1 cut(s) | 593 |
| BbrPI | CACGTG | 1 cut(s) | 2900 |
| BbsI | GAAGAC | 3 cut(s) | 657, 1281, 3522 |
| Bbv12I | GWGCWC | 6 cut(s) | 337, 527, 822, 864, 2967, 3369 |
| BbvCI | CCTCAGC | 2 cut(s) | 1249, 1764 |
| BccI | CCATC | 7 cut(s) | 569, 871, 1390, 2204, 2691, 3506, 3770 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 332, 366 |
| BciT130I | CCWGG | 4 cut(s) | 311, 1570, 3186, 3897 |
| BciVI | GTATCC | 1 cut(s) | 120 |
| BclI | TGATCA | 2 cut(s) | 1182, 2812 |
| BcnI | CCSGG | 1 cut(s) | 1076 |
| BcoDI | GTCTC | 5 cut(s) | 245, 1018, 3263, 3526, 3864 |
| BcuI | ACTAGT | 1 cut(s) | 659 |
| BfaI | CTAG | 7 cut(s) | 660, 980, 2321, 2694, 2759, 3279, 3848 |
| BfmI | CTRYAG | 5 cut(s) | 135, 572, 1717, 1749, 3663 |
| BfuAI | ACCTGC | 3 cut(s) | 37, 139, 3449 |
| BfuI | GTATCC | 1 cut(s) | 120 |
| BglII | AGATCT | 1 cut(s) | 483 |
| BlpI | GCTNAGC | 1 cut(s) | 1097 |
| BmcAI | AGTACT | 1 cut(s) | 104 |
| Bme1390I | CCNGG | 5 cut(s) | 311, 1076, 1570, 3186, 3897 |
| Bme18I | GGWCC | 1 cut(s) | 1496 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 3 cut(s) | 163, 1496, 1857 |
| BmiI | GGNNCC | 4 cut(s) | 1532, 1898, 2895, 3894 |
| BmrFI | CCNGG | 5 cut(s) | 311, 1076, 1570, 3186, 3897 |
| BmrI | ACTGGG | 1 cut(s) | 3704 |
| BmsI | GCATC | 9 cut(s) | 175, 828, 1368, 2287, 2346, 3042, 3217, 3606, 3814 |
| BmuI | ACTGGG | 1 cut(s) | 3704 |
| BpiI | GAAGAC | 3 cut(s) | 657, 1281, 3522 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1679, 1711 |
| BpmI | CTGGAG | 2 cut(s) | 127, 2568 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1249, 1313, 1764, 3368 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1097 |
| Bpu14I | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| BpuEI | CTTGAG | 5 cut(s) | 508, 1227, 1683, 2870, 3452 |
| BpuMI | CCSGG | 1 cut(s) | 1076 |
| Bsa29I | ATCGAT | 2 cut(s) | 494, 564 |
| BsaAI | YACGTR | 2 cut(s) | 1670, 2900 |
| BsaJI | CCNNGG | 5 cut(s) | 310, 613, 1569, 1905, 3185 |
| BsaWI | WCCGGW | 1 cut(s) | 902 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 378, 408, 875, 905, 2197, 2227 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 793, 1175, 1906, 1933, 3279 |
| Bse118I | RCCGGY | 1 cut(s) | 2542 |
| Bse1I | ACTGG | 6 cut(s) | 68, 110, 1955, 2031, 2687, 3710 |
| Bse3DI | GCAATG | 3 cut(s) | 1986, 2490, 3579 |
| BseBI | CCWGG | 4 cut(s) | 311, 1570, 3186, 3897 |
| BseCI | ATCGAT | 2 cut(s) | 494, 564 |
| BseDI | CCNNGG | 5 cut(s) | 310, 613, 1569, 1905, 3185 |
| BseGI | GGATG | 8 cut(s) | 1071, 1165, 1382, 2152, 2361, 3211, 3475, 3621 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 793, 1175, 1906, 1933, 3279 |
| BseMI | GCAATG | 3 cut(s) | 1986, 2490, 3579 |
| BseMII | CTCAG | 8 cut(s) | 80, 1263, 1497, 1778, 2787, 3177, 3327, 3382 |
| BseNI | ACTGG | 6 cut(s) | 68, 110, 1955, 2031, 2687, 3710 |
| BseRI | GAGGAG | 6 cut(s) | 633, 696, 848, 896, 1695, 1698 |
| BseSI | GKGCMC | 2 cut(s) | 771, 788 |
| BshFI | GGCC | 6 cut(s) | 165, 612, 1308, 1858, 2624, 3283 |
| BshNI | GGYRCC | 2 cut(s) | 1530, 3892 |
| BshVI | ATCGAT | 2 cut(s) | 494, 564 |
| BsiHKAI | GWGCWC | 6 cut(s) | 337, 527, 822, 864, 2967, 3369 |
| BsiSI | CCGG | 3 cut(s) | 903, 1076, 2543 |
| BslFI | GGGAC | 2 cut(s) | 1579, 2714 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 793, 1175, 1906, 1933, 3279 |
| BsmAI | GTCTC | 5 cut(s) | 245, 1018, 3263, 3526, 3864 |
| BsmFI | GGGAC | 2 cut(s) | 1579, 2714 |
| BsmI | GAATGC | 2 cut(s) | 609, 2346 |
| BsnI | GGCC | 6 cut(s) | 165, 612, 1308, 1858, 2624, 3283 |
| Bsp119I | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| Bsp1407I | TGTACA | 1 cut(s) | 589 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1097 |
| Bsp19I | CCATGG | 1 cut(s) | 613 |
| BspACI | CCGC | 4 cut(s) | 1494, 2373, 2819, 3273 |
| BspANI | GGCC | 6 cut(s) | 165, 612, 1308, 1858, 2624, 3283 |
| BspCNI | CTCAG | 8 cut(s) | 81, 1262, 1496, 1777, 2788, 3176, 3328, 3381 |
| BspDI | ATCGAT | 2 cut(s) | 494, 564 |
| BspHI | TCATGA | 1 cut(s) | 2959 |
| BspLI | GGNNCC | 4 cut(s) | 1532, 1898, 2895, 3894 |
| BspMAI | CTGCAG | 3 cut(s) | 139, 576, 1753 |
| BspMI | ACCTGC | 3 cut(s) | 37, 139, 3449 |
| BspPI | GGATC | 5 cut(s) | 1955, 2090, 2429, 2496, 2582 |
| BspQI | GCTCTTC | 1 cut(s) | 1436 |
| BspT104I | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| BspT107I | GGYRCC | 2 cut(s) | 1530, 3892 |
| BsrBI | CCGCTC | 1 cut(s) | 2373 |
| BsrDI | GCAATG | 3 cut(s) | 1986, 2490, 3579 |
| BsrFI | RCCGGY | 1 cut(s) | 2542 |
| BsrGI | TGTACA | 1 cut(s) | 589 |
| BsrI | ACTGG | 6 cut(s) | 68, 110, 1955, 2031, 2687, 3710 |
| BssAI | RCCGGY | 1 cut(s) | 2542 |
| BssECI | CCNNGG | 5 cut(s) | 310, 613, 1569, 1905, 3185 |
| BssNAI | GTATAC | 1 cut(s) | 2857 |
| BssSI | CACGAG | 1 cut(s) | 593 |
| BssT1I | CCWWGG | 2 cut(s) | 613, 1905 |
| Bst1107I | GTATAC | 1 cut(s) | 2857 |
| Bst2BI | CACGAG | 1 cut(s) | 593 |
| Bst2UI | CCWGG | 4 cut(s) | 311, 1570, 3186, 3897 |
| Bst4CI | ACNGT | 8 cut(s) | 394, 449, 723, 969, 1267, 2912, 3596, 3667 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 604, 812 |
| BstAUI | TGTACA | 1 cut(s) | 589 |
| BstBAI | YACGTR | 2 cut(s) | 1670, 2900 |
| BstBI | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| BstC8I | GCNNGC | 6 cut(s) | 173, 345, 1255, 2544, 2892, 3351 |
| BstDSI | CCRYGG | 1 cut(s) | 613 |
| BstF5I | GGATG | 8 cut(s) | 1071, 1165, 1382, 2152, 2361, 3211, 3475, 3621 |
| BstHHI | GCGC | 1 cut(s) | 3621 |
| BstMAI | GTCTC | 5 cut(s) | 245, 1018, 3263, 3526, 3864 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 146, 604, 812, 1314, 1728, 2690, 2729, 2900, 3596 |
| BstNI | CCWGG | 4 cut(s) | 311, 1570, 3186, 3897 |
| BstNSI | RCATGY | 4 cut(s) | 1237, 1450, 1825, 1997 |
| BstSCI | CCNGG | 5 cut(s) | 309, 1074, 1568, 3184, 3895 |
| BstSFI | CTRYAG | 5 cut(s) | 135, 572, 1717, 1749, 3663 |
| BstSLI | GKGCMC | 2 cut(s) | 771, 788 |
| BstSNI | TACGTA | 1 cut(s) | 1670 |
| BstV2I | GAAGAC | 3 cut(s) | 657, 1281, 3522 |
| BstX2I | RGATCY | 2 cut(s) | 483, 2574 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 923, 2632, 2713, 2904 |
| BstYI | RGATCY | 2 cut(s) | 483, 2574 |
| BstZ17I | GTATAC | 1 cut(s) | 2857 |
| Bsu15I | ATCGAT | 2 cut(s) | 494, 564 |
| BsuI | GTATCC | 1 cut(s) | 120 |
| BsuRI | GGCC | 6 cut(s) | 165, 612, 1308, 1858, 2624, 3283 |
| BsuTUI | ATCGAT | 2 cut(s) | 494, 564 |
| BtgI | CCRYGG | 1 cut(s) | 613 |
| BtsCI | GGATG | 8 cut(s) | 1071, 1165, 1382, 2152, 2361, 3211, 3475, 3621 |
| BtsI | GCAGTG | 1 cut(s) | 1917 |
| BtsIMutI | CAGTG | 9 cut(s) | 61, 454, 1272, 1917, 2430, 2670, 2694, 3672, 3839 |
| BveI | ACCTGC | 3 cut(s) | 37, 139, 3449 |
| Cac8I | GCNNGC | 6 cut(s) | 173, 345, 1255, 2544, 2892, 3351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1271 |
| CciI | TCATGA | 1 cut(s) | 2959 |
| CfoI | GCGC | 1 cut(s) | 3621 |
| Cfr10I | RCCGGY | 1 cut(s) | 2542 |
| Cfr13I | GGNCC | 3 cut(s) | 163, 1496, 1857 |
| ClaI | ATCGAT | 2 cut(s) | 494, 564 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2333, 2368, 3593, 3628 |
| DraI | TTTAAA | 1 cut(s) | 3631 |
| DriI | GACNNNNNGTC | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 1306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 64 |
| Ecl136II | GAGCTC | 2 cut(s) | 820, 862 |
| Eco105I | TACGTA | 1 cut(s) | 1670 |
| Eco130I | CCWWGG | 2 cut(s) | 613, 1905 |
| Eco147I | AGGCCT | 1 cut(s) | 3283 |
| Eco24I | GRGCYC | 4 cut(s) | 317, 822, 864, 1901 |
| Eco47I | GGWCC | 1 cut(s) | 1496 |
| Eco53kI | GAGCTC | 2 cut(s) | 820, 862 |
| Eco57I | CTGAAG | 8 cut(s) | 1103, 1293, 1454, 1950, 2196, 2409, 2694, 3863 |
| Eco72I | CACGTG | 1 cut(s) | 2900 |
| EcoICRI | GAGCTC | 2 cut(s) | 820, 862 |
| EcoRII | CCWGG | 4 cut(s) | 309, 1568, 3184, 3895 |
| EcoT14I | CCWWGG | 2 cut(s) | 613, 1905 |
| EcoT22I | ATGCAT | 1 cut(s) | 3720 |
| EcoT38I | GRGCYC | 4 cut(s) | 317, 822, 864, 1901 |
| ErhI | CCWWGG | 2 cut(s) | 613, 1905 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1076, 1108, 2561, 2593, 3414, 3446 |
| FaqI | GGGAC | 2 cut(s) | 1579, 2714 |
| FauNDI | CATATG | 3 cut(s) | 284, 646, 3345 |
| FbaI | TGATCA | 2 cut(s) | 1182, 2812 |
| FblI | GTMKAC | 1 cut(s) | 2856 |
| FokI | GGATG | 8 cut(s) | 1058, 1152, 1369, 2159, 2368, 3218, 3482, 3628 |
| FriOI | GRGCYC | 4 cut(s) | 317, 822, 864, 1901 |
| FspBI | CTAG | 7 cut(s) | 660, 980, 2321, 2694, 2759, 3279, 3848 |
| FspI | TGCGCA | 1 cut(s) | 3620 |
| GlaI | GCGC | 1 cut(s) | 3620 |
| GsuI | CTGGAG | 2 cut(s) | 127, 2568 |
| HaeIII | GGCC | 6 cut(s) | 165, 612, 1308, 1858, 2624, 3283 |
| HapII | CCGG | 3 cut(s) | 903, 1076, 2543 |
| HhaI | GCGC | 1 cut(s) | 3621 |
| Hin6I | GCGC | 1 cut(s) | 3619 |
| HinP1I | GCGC | 1 cut(s) | 3619 |
| HincII | GTYRAC | 1 cut(s) | 2532 |
| HindII | GTYRAC | 1 cut(s) | 2532 |
| HindIII | AAGCTT | 7 cut(s) | 1315, 1599, 2079, 2454, 3304, 3428, 3695 |
| HpaI | GTTAAC | 1 cut(s) | 2532 |
| HpaII | CCGG | 3 cut(s) | 903, 1076, 2543 |
| HphI | GGTGA | 9 cut(s) | 220, 337, 1366, 1684, 2225, 2578, 2615, 3431, 3473 |
| HpyCH4III | ACNGT | 8 cut(s) | 394, 449, 723, 969, 1267, 2912, 3596, 3667 |
| HpyCH4IV | ACGT | 6 cut(s) | 331, 855, 1669, 2110, 2899, 3745 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 146, 604, 812, 1314, 1728, 2690, 2729, 2900, 3596 |
| HpySE526I | ACGT | 6 cut(s) | 331, 855, 1669, 2110, 2899, 3745 |
| HspAI | GCGC | 1 cut(s) | 3619 |
| KpnI | GGTACC | 1 cut(s) | 1534 |
| KroI | GCCGGC | 1 cut(s) | 2542 |
| KroNI | GCCGGC | 1 cut(s) | 2544 |
| Ksp22I | TGATCA | 2 cut(s) | 1182, 2812 |
| KspAI | GTTAAC | 1 cut(s) | 2532 |
| LguI | GCTCTTC | 1 cut(s) | 1436 |
| LweI | GCATC | 9 cut(s) | 175, 828, 1368, 2287, 2346, 3042, 3217, 3606, 3814 |
| MaeI | CTAG | 7 cut(s) | 660, 980, 2321, 2694, 2759, 3279, 3848 |
| MaeII | ACGT | 6 cut(s) | 331, 855, 1669, 2110, 2899, 3745 |
| MaeIII | GTNAC | 8 cut(s) | 640, 746, 755, 1042, 2428, 3339, 3550, 3674 |
| MbiI | CCGCTC | 1 cut(s) | 2373 |
| MfeI | CAATTG | 7 cut(s) | 338, 423, 1109, 1742, 2505, 2559, 3177 |
| MflI | RGATCY | 2 cut(s) | 483, 2574 |
| MlsI | TGGCCA | 1 cut(s) | 1308 |
| MluNI | TGGCCA | 1 cut(s) | 1308 |
| MlyI | GAGTC | 4 cut(s) | 1050, 2240, 2877, 3265 |
| MmeI | TCCRAC | 5 cut(s) | 564, 1809, 2723, 3183, 3356 |
| Mox20I | TGGCCA | 1 cut(s) | 1308 |
| Mph1103I | ATGCAT | 1 cut(s) | 3720 |
| MroNI | GCCGGC | 1 cut(s) | 2542 |
| MroXI | GAANNNNTTC | 5 cut(s) | 938, 1431, 2316, 3078, 3864 |
| MscI | TGGCCA | 1 cut(s) | 1308 |
| MslI | CAYNNNNRTG | 7 cut(s) | 921, 1061, 2711, 2902, 3296, 3500, 3738 |
| Msp20I | TGGCCA | 1 cut(s) | 1308 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspI | CCGG | 3 cut(s) | 903, 1076, 2543 |
| MspR9I | CCNGG | 5 cut(s) | 311, 1076, 1570, 3186, 3897 |
| MunI | CAATTG | 7 cut(s) | 338, 423, 1109, 1742, 2505, 2559, 3177 |
| Mva1269I | GAATGC | 2 cut(s) | 609, 2346 |
| MvaI | CCWGG | 4 cut(s) | 311, 1570, 3186, 3897 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 146, 604, 812, 1314, 1728, 2690, 2729, 2900, 3596 |
| NaeI | GCCGGC | 1 cut(s) | 2544 |
| NciI | CCSGG | 1 cut(s) | 1076 |
| NcoI | CCATGG | 1 cut(s) | 613 |
| NdeI | CATATG | 3 cut(s) | 284, 646, 3345 |
| NgoMIV | GCCGGC | 1 cut(s) | 2542 |
| NlaIV | GGNNCC | 4 cut(s) | 1532, 1898, 2895, 3894 |
| NmeAIII | GCCGAG | 1 cut(s) | 1807 |
| NmuCI | GTSAC | 5 cut(s) | 640, 755, 1042, 2428, 3674 |
| NsbI | TGCGCA | 1 cut(s) | 3620 |
| NsiI | ATGCAT | 1 cut(s) | 3720 |
| NspI | RCATGY | 4 cut(s) | 1237, 1450, 1825, 1997 |
| NspV | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| OliI | CACNNNNGTG | 2 cut(s) | 921, 1061 |
| PagI | TCATGA | 1 cut(s) | 2959 |
| PaqCI | CACCTGC | 1 cut(s) | 3449 |
| PceI | AGGCCT | 1 cut(s) | 3283 |
| PciI | ACATGT | 2 cut(s) | 1233, 1993 |
| PciSI | GCTCTTC | 1 cut(s) | 1436 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1779 |
| PctI | GAATGC | 2 cut(s) | 609, 2346 |
| PdiI | GCCGGC | 1 cut(s) | 2544 |
| PdmI | GAANNNNTTC | 5 cut(s) | 938, 1431, 2316, 3078, 3864 |
| PfeI | GAWTC | 7 cut(s) | 290, 536, 899, 1427, 2072, 2515, 3172 |
| PfoI | TCCNGGA | 1 cut(s) | 1074 |
| PleI | GAGTC | 4 cut(s) | 1049, 2239, 2877, 3264 |
| PmaCI | CACGTG | 1 cut(s) | 2900 |
| PmlI | CACGTG | 1 cut(s) | 2900 |
| PpsI | GAGTC | 4 cut(s) | 1049, 2239, 2877, 3264 |
| Ppu21I | YACGTR | 2 cut(s) | 1670, 2900 |
| PscI | ACATGT | 2 cut(s) | 1233, 1993 |
| PshBI | ATTAAT | 1 cut(s) | 3197 |
| Psp124BI | GAGCTC | 2 cut(s) | 822, 864 |
| Psp6I | CCWGG | 4 cut(s) | 309, 1568, 3184, 3895 |
| PspCI | CACGTG | 1 cut(s) | 2900 |
| PspGI | CCWGG | 4 cut(s) | 309, 1568, 3184, 3895 |
| PspN4I | GGNNCC | 4 cut(s) | 1532, 1898, 2895, 3894 |
| PspPI | GGNCC | 3 cut(s) | 163, 1496, 1857 |
| PstI | CTGCAG | 3 cut(s) | 139, 576, 1753 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1271 |
| PsuI | RGATCY | 2 cut(s) | 483, 2574 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 7 cut(s) | 921, 1061, 2711, 2902, 3296, 3500, 3738 |
| SacI | GAGCTC | 2 cut(s) | 822, 864 |
| SapI | GCTCTTC | 1 cut(s) | 1436 |
| Sau96I | GGNCC | 3 cut(s) | 163, 1496, 1857 |
| ScaI | AGTACT | 1 cut(s) | 104 |
| SchI | GAGTC | 4 cut(s) | 1050, 2240, 2877, 3265 |
| ScrFI | CCNGG | 5 cut(s) | 311, 1076, 1570, 3186, 3897 |
| SfaNI | GCATC | 9 cut(s) | 175, 828, 1368, 2287, 2346, 3042, 3217, 3606, 3814 |
| SfcI | CTRYAG | 5 cut(s) | 135, 572, 1717, 1749, 3663 |
| SfuI | TTCGAA | 4 cut(s) | 352, 2139, 3701, 3858 |
| SinI | GGWCC | 1 cut(s) | 1496 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 921, 1061, 2711, 2902, 3296, 3500, 3738 |
| SmlI | CTYRAG | 5 cut(s) | 487, 1242, 1698, 2885, 3431 |
| SmoI | CTYRAG | 5 cut(s) | 487, 1242, 1698, 2885, 3431 |
| SnaBI | TACGTA | 1 cut(s) | 1670 |
| SpeI | ACTAGT | 1 cut(s) | 659 |
| SseBI | AGGCCT | 1 cut(s) | 3283 |
| SsiI | CCGC | 4 cut(s) | 1494, 2373, 2819, 3273 |
| SspMI | CTAG | 7 cut(s) | 660, 980, 2321, 2694, 2759, 3279, 3848 |
| SstI | GAGCTC | 2 cut(s) | 822, 864 |
| StuI | AGGCCT | 1 cut(s) | 3283 |
| StyD4I | CCNGG | 5 cut(s) | 309, 1074, 1568, 3184, 3895 |
| StyI | CCWWGG | 2 cut(s) | 613, 1905 |
| TaaI | ACNGT | 8 cut(s) | 394, 449, 723, 969, 1267, 2912, 3596, 3667 |
| TaiI | ACGT | 6 cut(s) | 334, 858, 1672, 2113, 2902, 3748 |
| TatI | WGTACW | 6 cut(s) | 102, 589, 1065, 3264, 3482, 3659 |
| TfiI | GAWTC | 7 cut(s) | 290, 536, 899, 1427, 2072, 2515, 3172 |
| TscAI | CASTG | 9 cut(s) | 68, 454, 1272, 1917, 2437, 2677, 2694, 3672, 3846 |
| TseFI | GTSAC | 5 cut(s) | 640, 755, 1042, 2428, 3674 |
| Tsp45I | GTSAC | 5 cut(s) | 640, 755, 1042, 2428, 3674 |
| TspGWI | ACGGA | 1 cut(s) | 2895 |
| TspRI | CASTG | 9 cut(s) | 68, 454, 1272, 1917, 2437, 2677, 2694, 3672, 3846 |
| VpaK11BI | GGWCC | 1 cut(s) | 1496 |
| VspI | ATTAAT | 1 cut(s) | 3197 |
| XapI | RAATTY | 4 cut(s) | 2316, 3000, 3026, 3624 |
| XbaI | TCTAGA | 1 cut(s) | 2320 |
| XceI | RCATGY | 4 cut(s) | 1237, 1450, 1825, 1997 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1807, 1851, 2694 |
| XmiI | GTMKAC | 1 cut(s) | 2856 |
| XmnI | GAANNNNTTC | 5 cut(s) | 938, 1431, 2316, 3078, 3864 |
| XspI | CTAG | 7 cut(s) | 660, 980, 2321, 2694, 2759, 3279, 3848 |
| ZrmI | AGTACT | 1 cut(s) | 104 |
| Zsp2I | ATGCAT | 1 cut(s) | 3720 |