RchiOBHm_Chr1g0330721

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000154
Physical Location & Seq
Reverse (-)
20509702 .. 20512043
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55986

Sequence Viewer

Length: 2130 bp
ATGGTGCGAAGCATGTTGAAGACTAGCAGGATTCCAAAGGAGTTTTGGCCTGAGGCAGTAAATTGGAGTGTTCATGTGCTCAATCGAAGCCCAACTGTTGCTGTGAAACACATGACACCTGAGGAAGCCTGGAGTAATCGTAAACCGACAGTTGATCATTTTAGAGTGTTTGGGTGCGTAGCATATTCCCATGTTCCGGATGAGAGAAGGAGGAAGCTGGATGATAAAGGAGTGAAGTGCATCTTTCTTGGGAGTTCATGGGATTGGAGTCGTATTGGACAGCAGCAAGTTCCACTAATTGCTGATGAAGGAAGAGTTGACAGTGAGACAAATCATAAGTTGGAAGCACCAAATGAAAGCCCATCACCTGTGGCAGCAAGAAGTCCAAGTGAGGTCCAGCCAGTGAGTCCACGAAGTCCAAGAGCTCAACGTGAGAGGAAGAGGCCTGCTTGGATGATGGATTATGAGAGTGGAGGTGACCTAATAGATGATGAAGCAATTGCTCATTTAGCTCTGTTTTCTGATTGTGATCCGATAACTTATAAAGAAGCTGCTAAGGAGACAAAGTGGAGAGAAGTTATGGATGCAGAGATGAATTCAATTGAGAAAAATGATACATGGGAATTGACAAAACTCCCAAAAGGTCAACAATCCATTGGAGTGAAGTGGGTGTATAAAACAAAGCTGAGGCAAGACGGTGAAGTTGACAAATACAAAGCGAGGCTCGTTGCAAAGGGTTACAAGCAGAAATTTGGTGTTGATTACCAAGAAGTGTTTGCACCAGTAGCGAAGCTTGATACAGTATGGATGGTGTTGTGTTTGGCTGCTCAGAATTCTTGGCCGGTTTATCAGCTTGATGTGAAGTCAGCATTTTTGCACGGAGAGCTGGAAGAAGAGGTGTACATCAATCAACCCCCTGGATATGTGAAGCAAGTCTTTGAAAATCAGGTATATAGACTAAAGAAAGCATTATATGGCTTAAAGCAAGCACCAAGGGCTTGGTACAGCCATATTGATGCTTTCTTTGTCAAAGAAGGGTTTTGCAAATGTCCTTATGAGCACACACTTTATACTAAGTTAGGAGATGATGGCAGAATACTTGTTATGTGTTTATATGTGGATGATCTCATATATACCAGTAATAATAGCCTTATGTTGGATGCCTTCAAGAAGTCCATGATGGAGGAGTTCGATATGACAGACTTGGGGTTAATGCGTTACTTTCTTGGCATAGAAATTCTACAGTCATCAGCTGGGATTTTCATCTCACAGAAGAAGTATGCACTGGAGGTTCTAGAGAGATTCAAAATGGGGAACTGCAATTCGGTTTGCACTCCAACTGAAGTGGGTTTGAAGCTTACAAAGAATGGGTCAGGAAAGAGGGTGAATGCTACACTCTACAAGCAAATAGTTGGAAGTTTGATGTATTTAACTACCACAAGACCAGATATTATGTTTGCTGTGAGTATGGTTAGTCGGTACATGGAGAAACCTATGGAGGATCATCTGGTAGCAGTGAAGAGGATACTGCGCTACTTGAAAGGTACTGCTGATCTTGGAATCTTTTATAAGAAGTTTCAAAGTTCAAATTTGTGTGGCTTCACGGATAGTGATTATGCGGGTGATATGGATGATAGAAAGAGTACGTCTGGGTTTGTGTTTATGATGGGTTCAGGAGCTATCTCGTGGTCAGCAAAGAAGCAACAAATAGTGACATTGTCAACTACTGAAGCTGAGTTTGTTGCAGCTGCTTCGAGTTCATGTCAGGCTATTTGGTTACGAAGGATGCTTGGAGTTTTACAAAACCAGCAGCAGAGTCCAACCATTATTTATTGTGACAACAGTTCATCAATTAAACTCTCAAAAAATTCAGTTTTACATGGAAGAAGCAAGCACATTGATGTGAGGTATCATTTCCTCCGTGATCTTATGAAGGAAGGAGCAATCGAACTGGTGTATTGTCCTAGTAATGATCAAGTGGCAGATATTTTAACTAAGCCTCTCAAATCAGCTGTTTTTGTGAAGTTACGTGGAGAGCTGGGTATGTGTTCTTGGAAAGAAGCTGTGGATTATGGAGTCTGTGGTGGAAAAGTGAGCTGCTGGAGTTTTCTTTGTAAACTGATGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

709

Amino Acids

80.64

Weight (kDa)

8.71

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 59 - 85 3.8e-08 Retroviral polymerase SH3-like domain
RVT_2 PF07727 204 - 448 5.7e-84 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 543, 1569
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 1 cut(s) 1619
AclWI GGATC 2 cut(s) 524, 1509
AcoI YGGCCR 1 cut(s) 839
AcsI RAATTY 6 cut(s) 595, 749, 832, 1236, 1588, 1867
AcuI CTGAAG 2 cut(s) 1362, 1749
AfaI GTAC 5 cut(s) 902, 1004, 1481, 1546, 1645
AfiI CCNNNNNNNGG 2 cut(s) 196, 1156
AgsI TTSAA 9 cut(s) 19, 600, 941, 1168, 1306, 1354, 1540, 1580, 1587
AjnI CCWGG 2 cut(s) 128, 916
Alw21I GWGCWC 3 cut(s) 81, 427, 1062
Alw26I GTCTC 2 cut(s) 320, 554
AlwI GGATC 2 cut(s) 524, 1509
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 3 cut(s) 47, 443, 839
ApeKI GCWGC 8 cut(s) 283, 374, 551, 824, 1745, 1748, 1810, 2097
ApoI RAATTY 6 cut(s) 595, 749, 832, 1236, 1588, 1867
ArsI GACNNNNNNTTYG 2 cut(s) 1355, 1387
AspLEI GCGC 1 cut(s) 1533
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 5 cut(s) 357, 488, 710, 1396, 1634
AvaII GGWCC 1 cut(s) 394
AxyI CCTNAGG 2 cut(s) 51, 120
BanII GRGCYC 1 cut(s) 427
BauI CACGAG 1 cut(s) 1684
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 3 cut(s) 81, 427, 1062
BbvCI CCTCAGC 1 cut(s) 686
BbvI GCAGC 8 cut(s) 295, 386, 538, 811, 1735, 1757, 1822, 2084
BccI CCATC 6 cut(s) 370, 451, 802, 1082, 1174, 1660
BcgI CGANNNNNNTGC 2 cut(s) 1734, 1768
BciT130I CCWGG 2 cut(s) 130, 918
BciVI GTATCC 1 cut(s) 1518
BclI TGATCA 2 cut(s) 154, 1972
BcoDI GTCTC 2 cut(s) 320, 554
BfaI CTAG 4 cut(s) 24, 1295, 1965, 2128
BfmI CTRYAG 1 cut(s) 1241
BfuI GTATCC 1 cut(s) 1518
BisI GCNGC 8 cut(s) 284, 375, 552, 825, 1746, 1749, 1811, 2098
BlsI GCNGC 8 cut(s) 285, 376, 553, 826, 1747, 1750, 1812, 2099
Bme1390I CCNGG 2 cut(s) 130, 918
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 130, 918
BmsI GCATC 5 cut(s) 249, 574, 1006, 1150, 1776
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 3 cut(s) 151, 1307, 2122
Bpu10I CCTNAGC 2 cut(s) 555, 686
BsaAI YACGTR 1 cut(s) 2030
BsaBI GATNNNNATC 2 cut(s) 528, 1262
BsaJI CCNNGG 2 cut(s) 916, 992
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 551, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 1156
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 5 cut(s) 401, 782, 1137, 1290, 1956
Bse21I CCTNAGG 2 cut(s) 51, 120
Bse8I GATNNNNATC 2 cut(s) 528, 1262
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 2 cut(s) 130, 918
BseDI CCNNGG 2 cut(s) 916, 992
BseGI GGATG 9 cut(s) 205, 226, 459, 589, 813, 1126, 1165, 1636, 1791
BseJI GATNNNNATC 2 cut(s) 528, 1262
BseLI CCNNNNNNNGG 2 cut(s) 196, 1156
BseMII CTCAG 5 cut(s) 42, 111, 677, 842, 1725
BseNI ACTGG 5 cut(s) 401, 782, 1137, 1290, 1956
BseRI GAGGAG 1 cut(s) 1199
BseXI GCAGC 8 cut(s) 295, 386, 538, 811, 1735, 1757, 1822, 2084
BseYI CCCAGC 2 cut(s) 1253, 2038
BshFI GGCC 3 cut(s) 49, 445, 841
BsiHKAI GWGCWC 3 cut(s) 81, 427, 1062
BsiSI CCGG 2 cut(s) 197, 842
BslI CCNNNNNNNGG 2 cut(s) 196, 1156
BsmAI GTCTC 2 cut(s) 320, 554
BsmI GAATGC 1 cut(s) 1393
BsnI GGCC 3 cut(s) 49, 445, 841
Bsp1286I GDGCHC 3 cut(s) 81, 427, 1062
Bsp13I TCCGGA 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 900
Bsp143I GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
BspACI CCGC 1 cut(s) 1619
BspANI GGCC 3 cut(s) 49, 445, 841
BspCNI CTCAG 5 cut(s) 43, 112, 678, 841, 1726
BspEI TCCGGA 1 cut(s) 196
BspPI GGATC 2 cut(s) 524, 1509
BsrFI RCCGGY 1 cut(s) 841
BsrGI TGTACA 1 cut(s) 900
BsrI ACTGG 5 cut(s) 401, 782, 1137, 1290, 1956
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 916, 992
BssMI GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
BssSI CACGAG 1 cut(s) 1684
BssT1I CCWWGG 1 cut(s) 992
Bst2BI CACGAG 1 cut(s) 1684
Bst2UI CCWGG 2 cut(s) 130, 918
Bst4CI ACNGT 7 cut(s) 97, 151, 323, 698, 802, 1245, 1844
Bst6I CTCTTC 4 cut(s) 307, 434, 888, 1514
BstAUI TGTACA 1 cut(s) 900
BstBAI YACGTR 1 cut(s) 2030
BstC8I GCNNGC 3 cut(s) 447, 987, 1892
BstDEI CTNAG 8 cut(s) 51, 120, 555, 686, 828, 1074, 1734, 1995
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 9 cut(s) 205, 226, 459, 589, 813, 1126, 1165, 1636, 1791
BstHHI GCGC 1 cut(s) 1533
BstKTI GATC 7 cut(s) 157, 532, 1126, 1504, 1555, 1927, 1975
BstMAI GTCTC 2 cut(s) 320, 554
BstMBI GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
BstMWI GCNNNNNNNGC 4 cut(s) 509, 785, 883, 995
BstNI CCWGG 2 cut(s) 130, 918
BstNSI RCATGY 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 128, 916
BstSFI CTRYAG 1 cut(s) 1241
BstV1I GCAGC 8 cut(s) 295, 386, 538, 811, 1735, 1757, 1822, 2084
BstV2I GAAGAC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 999
Bsu36I CCTNAGG 2 cut(s) 51, 120
BsuI GTATCC 1 cut(s) 1518
BsuRI GGCC 3 cut(s) 49, 445, 841
BtsCI GGATG 9 cut(s) 205, 226, 459, 589, 813, 1126, 1165, 1636, 1791
BtsI GCAGTG 1 cut(s) 1521
BtsIMutI CAGTG 4 cut(s) 328, 408, 1283, 1521
Cac8I GCNNGC 3 cut(s) 447, 987, 1892
CfoI GCGC 1 cut(s) 1533
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 5 cut(s) 901, 1003, 1480, 1545, 1644
CspCI CAANNNNNGTGG 2 cut(s) 1326, 1361
CviQI GTAC 5 cut(s) 901, 1003, 1480, 1545, 1644
DdeI CTNAG 8 cut(s) 51, 120, 555, 686, 828, 1074, 1734, 1995
DpnI GATC 7 cut(s) 156, 531, 1125, 1503, 1554, 1926, 1974
DpnII GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
EaeI YGGCCR 1 cut(s) 839
Eam1104I CTCTTC 4 cut(s) 307, 434, 888, 1514
EarI CTCTTC 4 cut(s) 307, 434, 888, 1514
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 992
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 1362, 1749
Eco81I CCTNAGG 2 cut(s) 51, 120
Eco91I GGTNACC 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 476
EcoRI GAATTC 2 cut(s) 595, 832
EcoRII CCWGG 2 cut(s) 128, 916
EcoT14I CCWWGG 1 cut(s) 992
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 992
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 920, 952
FauI CCCGC 1 cut(s) 1612
FbaI TGATCA 2 cut(s) 154, 1972
Fnu4HI GCNGC 8 cut(s) 284, 375, 552, 825, 1746, 1749, 1811, 2098
FokI GGATG 9 cut(s) 212, 233, 466, 596, 820, 1133, 1172, 1643, 1798
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 8 cut(s) 284, 375, 552, 825, 1746, 1749, 1811, 2098
FspBI CTAG 4 cut(s) 24, 1295, 1965, 2128
GlaI GCGC 1 cut(s) 1532
GluI GCNGC 8 cut(s) 284, 375, 552, 825, 1746, 1749, 1811, 2098
GsaI CCCAGC 2 cut(s) 1257, 2042
GsuI CTGGAG 3 cut(s) 151, 1307, 2122
HaeIII GGCC 3 cut(s) 49, 445, 841
HapII CCGG 2 cut(s) 197, 842
HhaI GCGC 1 cut(s) 1533
Hin6I GCGC 1 cut(s) 1531
HinP1I GCGC 1 cut(s) 1531
HincII GTYRAC 4 cut(s) 319, 647, 706, 1722
HindII GTYRAC 4 cut(s) 319, 647, 706, 1722
HindIII AAGCTT 2 cut(s) 791, 1355
HinfI GANTC 7 cut(s) 31, 268, 406, 1302, 1560, 1816, 2076
HpaII CCGG 2 cut(s) 197, 842
HphI GGTGA 5 cut(s) 357, 488, 710, 1396, 1634
Hpy166II GTNNAC 8 cut(s) 143, 319, 410, 647, 706, 901, 1722, 2117
Hpy188I TCNGA 3 cut(s) 523, 534, 831
Hpy188III TCNNGA 5 cut(s) 197, 1168, 1295, 1374, 1674
Hpy8I GTNNAC 8 cut(s) 143, 319, 410, 647, 706, 901, 1722, 2117
HpyAV CCTTC 7 cut(s) 201, 302, 1028, 1174, 1776, 1927, 1931
HpyCH4III ACNGT 7 cut(s) 97, 151, 323, 698, 802, 1245, 1844
HpyCH4IV ACGT 3 cut(s) 430, 1646, 2029
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 785, 883, 995
HpyF3I CTNAG 8 cut(s) 51, 120, 555, 686, 828, 1074, 1734, 1995
HpySE526I ACGT 3 cut(s) 430, 1646, 2029
HspAI GCGC 1 cut(s) 1531
Kpn2I TCCGGA 1 cut(s) 196
Ksp22I TGATCA 2 cut(s) 154, 1972
Kzo9I GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
LmnI GCTCC 2 cut(s) 1676, 1940
Lsp1109I GCAGC 8 cut(s) 295, 386, 538, 811, 1735, 1757, 1822, 2084
LweI GCATC 5 cut(s) 249, 574, 1006, 1150, 1776
MaeI CTAG 4 cut(s) 24, 1295, 1965, 2128
MaeII ACGT 3 cut(s) 430, 1646, 2029
MaeIII GTNAC 7 cut(s) 476, 737, 1217, 1711, 1776, 1835, 2025
MalI GATC 7 cut(s) 156, 531, 1125, 1503, 1554, 1926, 1974
MboI GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
MboII GAAGA 8 cut(s) 31, 324, 451, 902, 905, 1285, 1531, 1896
MfeI CAATTG 2 cut(s) 498, 600
MhlI GDGCHC 3 cut(s) 81, 427, 1062
MlyI GAGTC 4 cut(s) 277, 415, 1825, 2085
MmeI TCCRAC 5 cut(s) 321, 1137, 1361, 1393, 1844
MroI TCCGGA 1 cut(s) 196
MseI TTAA 5 cut(s) 980, 1211, 1430, 1854, 1991
MslI CAYNNNNRTG 4 cut(s) 659, 1014, 1899, 1901
MspA1I CMGCKG 3 cut(s) 1253, 1748, 2012
MspI CCGG 2 cut(s) 197, 842
MspR9I CCNGG 2 cut(s) 130, 918
MunI CAATTG 2 cut(s) 498, 600
Mva1269I GAATGC 1 cut(s) 1393
MvaI CCWGG 2 cut(s) 130, 918
MwoI GCNNNNNNNGC 4 cut(s) 509, 785, 883, 995
NdeII GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
NmuCI GTSAC 3 cut(s) 476, 1711, 1835
NspI RCATGY 1 cut(s) 16
PceI AGGCCT 1 cut(s) 445
PctI GAATGC 1 cut(s) 1393
PfeI GAWTC 3 cut(s) 31, 1302, 1560
PflFI GACNNNGTC 1 cut(s) 1717
PkrI GCNGC 8 cut(s) 285, 376, 553, 826, 1747, 1750, 1812, 2099
PleI GAGTC 4 cut(s) 276, 414, 1824, 2084
PpsI GAGTC 4 cut(s) 276, 414, 1824, 2084
Ppu21I YACGTR 1 cut(s) 2030
PsiI TTATAA 2 cut(s) 543, 1569
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 128, 916
PspEI GGTNACC 1 cut(s) 476
PspFI CCCAGC 2 cut(s) 1253, 2038
PspGI CCWGG 2 cut(s) 128, 916
PspPI GGNCC 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 1717
PvuII CAGCTG 3 cut(s) 1253, 1748, 2012
RsaI GTAC 5 cut(s) 902, 1004, 1481, 1546, 1645
RsaNI GTAC 5 cut(s) 901, 1003, 1480, 1545, 1644
RseI CAYNNNNRTG 4 cut(s) 659, 1014, 1899, 1901
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 5 cut(s) 980, 1211, 1430, 1854, 1991
SatI GCNGC 8 cut(s) 284, 375, 552, 825, 1746, 1749, 1811, 2098
Sau3AI GATC 7 cut(s) 154, 529, 1123, 1501, 1552, 1924, 1972
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 4 cut(s) 277, 415, 1825, 2085
ScrFI CCNGG 2 cut(s) 130, 918
SduI GDGCHC 3 cut(s) 81, 427, 1062
SfaNI GCATC 5 cut(s) 249, 574, 1006, 1150, 1776
SfcI CTRYAG 1 cut(s) 1241
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 4 cut(s) 659, 1014, 1899, 1901
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 1 cut(s) 1619
SspMI CTAG 4 cut(s) 24, 1295, 1965, 2128
SstI GAGCTC 1 cut(s) 427
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 128, 916
StyI CCWWGG 1 cut(s) 992
TaaI ACNGT 7 cut(s) 97, 151, 323, 698, 802, 1245, 1844
TaiI ACGT 3 cut(s) 433, 1649, 2032
TaqI TCGA 4 cut(s) 85, 1191, 1754, 1947
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 3 cut(s) 31, 1302, 1560
Tru1I TTAA 5 cut(s) 980, 1211, 1430, 1854, 1991
Tru9I TTAA 5 cut(s) 980, 1211, 1430, 1854, 1991
TscAI CASTG 4 cut(s) 328, 408, 1290, 1521
TseFI GTSAC 3 cut(s) 476, 1711, 1835
TseI GCWGC 8 cut(s) 283, 374, 551, 824, 1745, 1748, 1810, 2097
Tsp45I GTSAC 3 cut(s) 476, 1711, 1835
TspGWI ACGGA 3 cut(s) 894, 1619, 1910
TspRI CASTG 4 cut(s) 328, 408, 1290, 1521
Tth111I GACNNNGTC 1 cut(s) 1717
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 6 cut(s) 595, 749, 832, 1236, 1588, 1867
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XspI CTAG 4 cut(s) 24, 1295, 1965, 2128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.