MD17G1077400.v1.1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000154
Physical Location & Seq
Forward (+)
6402395 .. 6404194
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1077400.v1.1.491

Sequence Viewer

Length: 1800 bp
ATGGCAGGATCGGGTAGTGGTGAGGTGAGAGCACCAATTTTCAATGGTGAAAATTATGAGTTTTGGAGTATTAAGATGAAGACCATTTTCAAGTCCTACGGATTGTGGAATCTGGTTGAAAAGGGTTTCGATGAATCAGATCTGAAGAAGATTGATGAATCTGAGGCGAAGAAGAAAGACAAAGAAGAGTCTAGTGGTGCTGGGAGGATGACGCTTGTTGAGGTGCTCATGAAGGATGCTAAAGCTCTGGGTCTGATTCAGGGCGCTGTTTCAGATGAGATATTTCCCAGAATCTCTCATGAAGAAACTTCAAAAGGCGTATGGGACATTCTGCAGCAAGAATACCATGGTGATAAACAGGTTAGAAGTGTTAAATTGCAAGGTCTTCGTAGGGAATTTGAATATACCCGAATGCGAGATGATGAATCACTTTCTGTTTATCTTACAAAACTATTTGATCTGATAAATCAAATGCGGAGCTATGGAGAGGAATTATCTCGAGAGAGAGTTGTTCAGAAATTATTAATTAGTTTGCCATCAGCTTATGACTCTATCTGTTCTGTTATTGAGCATTCGAAAGATTTGGATGTGATTGAGGTACAAGAGGTGGTGGCTTCTTTGAAGAGTTTTGAGTTAAGGATTGATAGGCATTCTGAAAATAAAACTGAGAGAGCATTTGCTAGCCTTAGTGTGAATCCCAAACCAGTTAAGTTTACTGGAAATCAAAATGCCAAGTACCATAAGAATTGGAAGGACAAAGGCAAGAAGTGGGATAACAAACCCACAGATGGGGCTAGAAATTCTTGTAAGCATTGTGGCAAGCTACATTTTGGTGAGTGTCGATTCAAAGGCAAACCAAAATGTTACAACTGTGATAAGTTTGGTCATCTAGCAAGGGACTGTAATAGCAAGAAGGCAGTGCAACAGCTTAATTATGCCACTCAGGCAGACTCTACACCAATCATGTTTTATGCTAGTAATCAAACTAATACTAGTGTAAAAGGATGTGAAGATGTATGGTATGTAGATAGTGGGTGTAGTAATCATATGACTGGAAGGGAGGATCTACTGGTTGATATTGACAAGTATGTGACTGCAAAGGTTGAAATGGGTACTGGACAGCTTGTTGATGTAACTGGTAAAGGAAGTCTTATGGTTGAAACTAAAATAGGCAAGAGATATATCAAGGAGGTTATGCTTGTGCCTGGATTGAAAGAAAATTTGCTCAGTGTAGGTCAAATGATGAAGCACGGTTATTACTTGGTGTTTGGAGGTCATAAAGTAGAGATCTATGATGATAGCTCATATTCCAACTTGATTGCCAGAGTACCAATGAAGGGAAATCGAAGTTTTCCAATGAAGTTACAGTCTGGAATACATATTGCCTACAGGGCAAATGTATGTCCTTCTACTGCTATGTGGCACAGAAGATTGGGTCATCTGAACATGAGCAGTTTGAAATTGATGCAGGAACAAGAATTGGTGGTCGGGTTACCGGAGATCAAAGTAATTAAAGGAGTGTGTGAAGGCTGTGTTCTTGGCAAACAATGCAGAGAAGCATTTCCAAGAGAAGCCACTACTAGAGCATCATTTCCTCTTGAGCTTATACACAGTGACATTTGCGGACCAATGCAGACAACTACAACAGCTGGAAATCGATACTTTCTCACTTTTATAGATGACTGCACCAGGATGTGTTGGATTTATTTTCTAAGGCATAAATCTGAAGTTCTCAATGTGTTTAAAAGGTTCAAAGCTACTGTAGAGTTGCAGAGTGGATATAAACTGAAGAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 Retrotran_gag_2 gag_pre-integrs zf-CCHC

Protein Analysis

600

Amino Acids

68.06

Weight (kDa)

8.94

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 26 - 213 2.2e-32 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 340 - 419 1.3e-23 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 468 - 516 1.6e-13 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 475, 1623
AclWI GGATC 2 cut(s) 16, 1071
AcsI RAATTY 3 cut(s) 395, 799, 1219
AcuI CTGAAG 2 cut(s) 164, 1746
AfaI GTAC 4 cut(s) 600, 737, 1114, 1329
AfiI CCNNNNNNNGG 3 cut(s) 788, 789, 1337
AhlI ACTAGT 1 cut(s) 992
AjnI CCWGG 2 cut(s) 1204, 1688
Alw21I GWGCWC 2 cut(s) 34, 228
AlwI GGATC 2 cut(s) 16, 1071
Ama87I CYCGRG 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 3 cut(s) 395, 799, 1219
AseI ATTAAT 1 cut(s) 524
Asp700I GAANNNNTTC 1 cut(s) 1560
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 1625
AsuHPI GGTGA 5 cut(s) 32, 37, 59, 362, 845
AsuII TTCGAA 1 cut(s) 575
AsuNHI GCTAGC 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 1625
BbsI GAAGAC 2 cut(s) 86, 377
Bbv12I GWGCWC 2 cut(s) 34, 228
BbvI GCAGC 1 cut(s) 346
BccI CCATC 2 cut(s) 544, 782
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 1206, 1690
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 7 cut(s) 192, 681, 795, 890, 975, 993, 1581
BfmI CTRYAG 3 cut(s) 332, 1387, 1761
BfoI RGCGCY 1 cut(s) 267
BglI GCCNNNNNGGC 2 cut(s) 944, 1391
BglII AGATCT 2 cut(s) 139, 1287
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 1206, 1690
Bme18I GGWCC 1 cut(s) 1625
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 1625
BmrFI CCNGG 2 cut(s) 1206, 1690
BmsI GCATC 3 cut(s) 226, 1455, 1595
BmtI GCTAGC 1 cut(s) 684
BpiI GAAGAC 2 cut(s) 86, 377
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 1619
Bsa29I ATCGAT 1 cut(s) 1657
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 1495
Bsc4I CCNNNNNNNGG 3 cut(s) 788, 789, 1337
Bse1I ACTGG 6 cut(s) 704, 721, 1057, 1074, 1120, 1141
BseBI CCWGG 2 cut(s) 1206, 1690
BseCI ATCGAT 1 cut(s) 1657
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 5 cut(s) 213, 241, 592, 1010, 1698
BseLI CCNNNNNNNGG 3 cut(s) 788, 789, 1337
BseMII CTCAG 4 cut(s) 153, 657, 956, 1240
BseNI ACTGG 6 cut(s) 704, 721, 1057, 1074, 1120, 1141
BseXI GCAGC 1 cut(s) 346
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 1669
BshVI ATCGAT 1 cut(s) 1657
BsiHKAI GWGCWC 2 cut(s) 34, 228
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 1496
BslFI GGGAC 2 cut(s) 338, 911
BslI CCNNNNNNNGG 3 cut(s) 788, 789, 1337
BsmFI GGGAC 2 cut(s) 338, 911
BsmI GAATGC 3 cut(s) 417, 571, 649
BsoBI CYCGRG 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 34, 228
Bsp143I GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 2 cut(s) 475, 1623
BspCNI CTCAG 4 cut(s) 154, 658, 955, 1239
BspDI ATCGAT 1 cut(s) 1657
BspHI TCATGA 2 cut(s) 228, 298
BspMAI CTGCAG 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 684
BspPI GGATC 2 cut(s) 16, 1071
BspT104I TTCGAA 1 cut(s) 575
BsrI ACTGG 6 cut(s) 704, 721, 1057, 1074, 1120, 1141
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 2 cut(s) 1206, 1690
Bst4CI ACNGT 6 cut(s) 872, 902, 1253, 1368, 1613, 1762
Bst6I CTCTTC 2 cut(s) 180, 617
BstAPI GCANNNNNTGC 1 cut(s) 1548
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 682, 821
BstDEI CTNAG 7 cut(s) 162, 666, 686, 942, 1226, 1712, 1797
BstDSI CCRYGG 1 cut(s) 346
BstEII GGTNACC 1 cut(s) 1491
BstF5I GGATG 5 cut(s) 213, 241, 592, 1010, 1698
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 6 cut(s) 11, 142, 460, 1066, 1290, 1503
BstMBI GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
BstMWI GCNNNNNNNGC 3 cut(s) 944, 1391, 1548
BstNI CCWGG 2 cut(s) 1206, 1690
BstPI GGTNACC 1 cut(s) 1491
BstSCI CCNGG 2 cut(s) 1204, 1688
BstSFI CTRYAG 3 cut(s) 332, 1387, 1761
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 2 cut(s) 86, 377
BstX2I RGATCY 3 cut(s) 139, 1063, 1287
BstYI RGATCY 3 cut(s) 139, 1063, 1287
Bsu15I ATCGAT 1 cut(s) 1657
BsuTUI ATCGAT 1 cut(s) 1657
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 5 cut(s) 213, 241, 592, 1010, 1698
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 924, 1234, 1618
Cac8I GCNNGC 2 cut(s) 682, 821
CciI TCATGA 2 cut(s) 228, 298
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 1625
ClaI ATCGAT 1 cut(s) 1657
CseI GACGC 1 cut(s) 220
Csp6I GTAC 4 cut(s) 599, 736, 1113, 1328
CviAII CATG 5 cut(s) 229, 299, 347, 964, 1447
CviQI GTAC 4 cut(s) 599, 736, 1113, 1328
DdeI CTNAG 7 cut(s) 162, 666, 686, 942, 1226, 1712, 1797
DpnI GATC 6 cut(s) 10, 141, 459, 1065, 1289, 1502
DpnII GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
DraI TTTAAA 1 cut(s) 1744
Eam1104I CTCTTC 2 cut(s) 180, 617
EarI CTCTTC 2 cut(s) 180, 617
Eco130I CCWWGG 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 1625
Eco57I CTGAAG 2 cut(s) 164, 1746
Eco88I CYCGRG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 1491
EcoO65I GGTNACC 1 cut(s) 1491
EcoRII CCWGG 2 cut(s) 1204, 1688
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 5 cut(s) 232, 302, 350, 967, 1450
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 2 cut(s) 338, 911
FatI CATG 5 cut(s) 228, 298, 346, 963, 1446
FauNDI CATATG 1 cut(s) 1047
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 5 cut(s) 220, 248, 599, 1017, 1705
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 7 cut(s) 192, 681, 795, 890, 975, 993, 1581
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 335
GsaI CCCAGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 1 cut(s) 1496
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 266
Hin1II CATG 5 cut(s) 232, 302, 350, 967, 1450
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 1794
HpaII CCGG 1 cut(s) 1496
HphI GGTGA 5 cut(s) 32, 37, 59, 362, 845
Hpy166II GTNNAC 1 cut(s) 714
Hpy188III TCNNGA 6 cut(s) 229, 299, 498, 500, 1371, 1598
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 7 cut(s) 226, 745, 907, 1050, 1330, 1416, 1520
HpyCH4III ACNGT 6 cut(s) 872, 902, 1253, 1368, 1613, 1762
HpyCH4V TGCA 9 cut(s) 334, 379, 922, 1097, 1468, 1551, 1633, 1686, 1771
HpyF10VI GCNNNNNNNGC 3 cut(s) 944, 1391, 1548
HpyF3I CTNAG 7 cut(s) 162, 666, 686, 942, 1226, 1712, 1797
Hsp92II CATG 5 cut(s) 232, 302, 350, 967, 1450
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
LmnI GCTCC 1 cut(s) 477
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 3 cut(s) 226, 1455, 1595
MaeI CTAG 7 cut(s) 192, 681, 795, 890, 975, 993, 1581
MaeIII GTNAC 6 cut(s) 863, 1090, 1132, 1362, 1491, 1613
MalI GATC 6 cut(s) 10, 141, 459, 1065, 1289, 1502
MboI GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
MflI RGATCY 3 cut(s) 139, 1063, 1287
MhlI GDGCHC 2 cut(s) 34, 228
MlyI GAGTC 3 cut(s) 197, 542, 944
MmeI TCCRAC 2 cut(s) 1335, 1679
MroXI GAANNNNTTC 1 cut(s) 1560
MseI TTAA 8 cut(s) 72, 372, 524, 635, 708, 930, 1512, 1743
MslI CAYNNNNRTG 2 cut(s) 831, 1691
MspA1I CMGCKG 1 cut(s) 1649
MspI CCGG 1 cut(s) 1496
MspR9I CCNGG 2 cut(s) 1206, 1690
Mva1269I GAATGC 3 cut(s) 417, 571, 649
MvaI CCWGG 2 cut(s) 1206, 1690
MwoI GCNNNNNNNGC 3 cut(s) 944, 1391, 1548
NcoI CCATGG 1 cut(s) 346
NdeI CATATG 1 cut(s) 1047
NdeII GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
NheI GCTAGC 1 cut(s) 680
NlaIII CATG 5 cut(s) 232, 302, 350, 967, 1450
NmuCI GTSAC 2 cut(s) 1090, 1613
NspV TTCGAA 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 498
PagI TCATGA 2 cut(s) 228, 298
PctI GAATGC 3 cut(s) 417, 571, 649
PdmI GAANNNNTTC 1 cut(s) 1560
PfeI GAWTC 8 cut(s) 109, 134, 158, 256, 291, 425, 694, 843
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 3 cut(s) 196, 542, 944
PpsI GAGTC 3 cut(s) 196, 542, 944
PshBI ATTAAT 1 cut(s) 524
Psp6I CCWGG 2 cut(s) 1204, 1688
PspEI GGTNACC 1 cut(s) 1491
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 1204, 1688
PspPI GGNCC 1 cut(s) 1625
PstI CTGCAG 1 cut(s) 336
PsuI RGATCY 3 cut(s) 139, 1063, 1287
PvuII CAGCTG 1 cut(s) 1649
RsaI GTAC 4 cut(s) 600, 737, 1114, 1329
RsaNI GTAC 4 cut(s) 599, 736, 1113, 1328
RseI CAYNNNNRTG 2 cut(s) 831, 1691
SaqAI TTAA 8 cut(s) 72, 372, 524, 635, 708, 930, 1512, 1743
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 6 cut(s) 8, 139, 457, 1063, 1287, 1500
Sau96I GGNCC 1 cut(s) 1625
SchI GAGTC 3 cut(s) 197, 542, 944
ScrFI CCNGG 2 cut(s) 1206, 1690
SduI GDGCHC 2 cut(s) 34, 228
SfaNI GCATC 3 cut(s) 226, 1455, 1595
SfcI CTRYAG 3 cut(s) 332, 1387, 1761
Sfr274I CTCGAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 1 cut(s) 1625
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 831, 1691
SmlI CTYRAG 2 cut(s) 498, 1598
SmoI CTYRAG 2 cut(s) 498, 1598
SpeI ACTAGT 1 cut(s) 992
SsiI CCGC 2 cut(s) 475, 1623
SspMI CTAG 7 cut(s) 192, 681, 795, 890, 975, 993, 1581
StyD4I CCNGG 2 cut(s) 1204, 1688
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 6 cut(s) 872, 902, 1253, 1368, 1613, 1762
TaqI TCGA 6 cut(s) 129, 499, 575, 841, 1345, 1657
TfiI GAWTC 8 cut(s) 109, 134, 158, 256, 291, 425, 694, 843
Tru1I TTAA 8 cut(s) 72, 372, 524, 635, 708, 930, 1512, 1743
Tru9I TTAA 8 cut(s) 72, 372, 524, 635, 708, 930, 1512, 1743
TscAI CASTG 3 cut(s) 924, 1234, 1618
TseFI GTSAC 2 cut(s) 1090, 1613
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 2 cut(s) 1090, 1613
TspDTI ATGAA 9 cut(s) 92, 147, 171, 245, 315, 438, 1259, 1349, 1373
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 3 cut(s) 924, 1234, 1618
VpaK11BI GGWCC 1 cut(s) 1625
VspI ATTAAT 1 cut(s) 524
XapI RAATTY 3 cut(s) 395, 799, 1219
XhoI CTCGAG 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 1560
XspI CTAG 7 cut(s) 192, 681, 795, 890, 975, 993, 1581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.