Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 67 - 228 | 2.1e-24 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 663 |
| AclWI | GGATC | 3 cut(s) | 251, 316, 627 |
| AcsI | RAATTY | 1 cut(s) | 82 |
| AfaI | GTAC | 2 cut(s) | 382, 470 |
| AgeI | ACCGGT | 1 cut(s) | 25 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 64 |
| AluBI | AGCT | 6 cut(s) | 103, 158, 413, 710, 770, 815 |
| AluI | AGCT | 6 cut(s) | 103, 158, 413, 710, 770, 815 |
| Alw26I | GTCTC | 2 cut(s) | 200, 311 |
| AlwI | GGATC | 3 cut(s) | 251, 316, 627 |
| ApeKI | GCWGC | 4 cut(s) | 5, 747, 767, 799 |
| ApoI | RAATTY | 1 cut(s) | 82 |
| AsiGI | ACCGGT | 1 cut(s) | 25 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 484 |
| AspS9I | GGNCC | 1 cut(s) | 508 |
| AsuHPI | GGTGA | 1 cut(s) | 403 |
| AvaII | GGWCC | 1 cut(s) | 508 |
| BanII | GRGCYC | 1 cut(s) | 403 |
| BbvI | GCAGC | 4 cut(s) | 17, 759, 779, 811 |
| BccI | CCATC | 3 cut(s) | 116, 305, 317 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 12, 46 |
| BcoDI | GTCTC | 2 cut(s) | 200, 311 |
| BfaI | CTAG | 1 cut(s) | 573 |
| BisI | GCNGC | 4 cut(s) | 6, 748, 768, 800 |
| BlsI | GCNGC | 4 cut(s) | 7, 749, 769, 801 |
| Bme18I | GGWCC | 1 cut(s) | 508 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 1 cut(s) | 508 |
| Bpu10I | CCTNAGC | 1 cut(s) | 771 |
| BpuEI | CTTGAG | 2 cut(s) | 260, 577 |
| BsaBI | GATNNNNATC | 1 cut(s) | 618 |
| BsaJI | CCNNGG | 2 cut(s) | 511, 819 |
| BsaWI | WCCGGW | 1 cut(s) | 25 |
| Bse118I | RCCGGY | 1 cut(s) | 25 |
| Bse3DI | GCAATG | 2 cut(s) | 144, 471 |
| Bse8I | GATNNNNATC | 1 cut(s) | 618 |
| BseDI | CCNNGG | 2 cut(s) | 511, 819 |
| BseGI | GGATG | 3 cut(s) | 297, 469, 640 |
| BseJI | GATNNNNATC | 1 cut(s) | 618 |
| BseMI | GCAATG | 2 cut(s) | 144, 471 |
| BseMII | CTCAG | 1 cut(s) | 785 |
| BseRI | GAGGAG | 1 cut(s) | 531 |
| BseXI | GCAGC | 4 cut(s) | 17, 759, 779, 811 |
| BsgI | GTGCAG | 1 cut(s) | 6 |
| BshTI | ACCGGT | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 26 |
| BslFI | GGGAC | 2 cut(s) | 368, 743 |
| BsmAI | GTCTC | 2 cut(s) | 200, 311 |
| BsmBI | CGTCTC | 1 cut(s) | 311 |
| BsmFI | GGGAC | 2 cut(s) | 368, 743 |
| Bsp1286I | GDGCHC | 1 cut(s) | 403 |
| Bsp143I | GATC | 3 cut(s) | 243, 321, 619 |
| Bsp19I | CCATGG | 1 cut(s) | 511 |
| BspCNI | CTCAG | 1 cut(s) | 784 |
| BspPI | GGATC | 3 cut(s) | 251, 316, 627 |
| BsrDI | GCAATG | 2 cut(s) | 144, 471 |
| BsrFI | RCCGGY | 1 cut(s) | 25 |
| BssAI | RCCGGY | 1 cut(s) | 25 |
| BssECI | CCNNGG | 2 cut(s) | 511, 819 |
| BssMI | GATC | 3 cut(s) | 243, 321, 619 |
| BssT1I | CCWWGG | 1 cut(s) | 511 |
| Bst4CI | ACNGT | 3 cut(s) | 175, 202, 820 |
| Bst6I | CTCTTC | 1 cut(s) | 778 |
| BstDEI | CTNAG | 1 cut(s) | 771 |
| BstDSI | CCRYGG | 2 cut(s) | 511, 819 |
| BstF5I | GGATG | 3 cut(s) | 297, 469, 640 |
| BstKTI | GATC | 3 cut(s) | 246, 324, 622 |
| BstMAI | GTCTC | 2 cut(s) | 200, 311 |
| BstMBI | GATC | 3 cut(s) | 243, 321, 619 |
| BstNSI | RCATGY | 1 cut(s) | 594 |
| BstV1I | GCAGC | 4 cut(s) | 17, 759, 779, 811 |
| BstX2I | RGATCY | 1 cut(s) | 619 |
| BstYI | RGATCY | 1 cut(s) | 619 |
| BtgI | CCRYGG | 2 cut(s) | 511, 819 |
| BtsCI | GGATG | 3 cut(s) | 297, 469, 640 |
| Cfr10I | RCCGGY | 1 cut(s) | 25 |
| Cfr13I | GGNCC | 1 cut(s) | 508 |
| Csp6I | GTAC | 2 cut(s) | 381, 469 |
| CspAI | ACCGGT | 1 cut(s) | 25 |
| CviAII | CATG | 6 cut(s) | 313, 361, 377, 512, 591, 725 |
| CviJI | RGCY | 9 cut(s) | 103, 158, 296, 401, 413, 651, 710, 770, 815 |
| CviKI_1 | RGCY | 9 cut(s) | 103, 158, 296, 401, 413, 651, 710, 770, 815 |
| CviQI | GTAC | 2 cut(s) | 381, 469 |
| DdeI | CTNAG | 1 cut(s) | 771 |
| DpnI | GATC | 3 cut(s) | 245, 323, 621 |
| DpnII | GATC | 3 cut(s) | 243, 321, 619 |
| DriI | GACNNNNNGTC | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 1 cut(s) | 778 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 64 |
| EarI | CTCTTC | 1 cut(s) | 778 |
| Eco130I | CCWWGG | 1 cut(s) | 511 |
| Eco24I | GRGCYC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 511 |
| EcoT38I | GRGCYC | 1 cut(s) | 403 |
| ErhI | CCWWGG | 1 cut(s) | 511 |
| Esp3I | CGTCTC | 1 cut(s) | 311 |
| FaeI | CATG | 6 cut(s) | 316, 364, 380, 515, 594, 728 |
| FaqI | GGGAC | 2 cut(s) | 368, 743 |
| FatI | CATG | 6 cut(s) | 312, 360, 376, 511, 590, 724 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 748, 768, 800 |
| FokI | GGATG | 3 cut(s) | 284, 476, 647 |
| FriOI | GRGCYC | 1 cut(s) | 403 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 748, 768, 800 |
| FspBI | CTAG | 1 cut(s) | 573 |
| GluI | GCNGC | 4 cut(s) | 6, 748, 768, 800 |
| HapII | CCGG | 1 cut(s) | 26 |
| Hin1II | CATG | 6 cut(s) | 316, 364, 380, 515, 594, 728 |
| HindIII | AAGCTT | 3 cut(s) | 101, 411, 708 |
| HinfI | GANTC | 5 cut(s) | 34, 109, 148, 356, 676 |
| HpaII | CCGG | 1 cut(s) | 26 |
| HphI | GGTGA | 1 cut(s) | 403 |
| Hpy166II | GTNNAC | 1 cut(s) | 538 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 624 |
| Hpy188III | TCNNGA | 5 cut(s) | 169, 205, 277, 556, 696 |
| Hpy8I | GTNNAC | 1 cut(s) | 538 |
| Hpy99I | CGWCG | 1 cut(s) | 50 |
| HpyAV | CCTTC | 5 cut(s) | 5, 175, 499, 709, 789 |
| HpyCH4III | ACNGT | 3 cut(s) | 175, 202, 820 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 137, 142, 643, 767 |
| HpyF3I | CTNAG | 1 cut(s) | 771 |
| Hsp92II | CATG | 6 cut(s) | 316, 364, 380, 515, 594, 728 |
| Kzo9I | GATC | 3 cut(s) | 243, 321, 619 |
| LpnPI | CCDG | 4 cut(s) | 39, 373, 718, 758 |
| Lsp1109I | GCAGC | 4 cut(s) | 17, 759, 779, 811 |
| MaeI | CTAG | 1 cut(s) | 573 |
| MaeIII | GTNAC | 2 cut(s) | 145, 528 |
| MalI | GATC | 3 cut(s) | 245, 323, 621 |
| MboI | GATC | 3 cut(s) | 243, 321, 619 |
| MboII | GAAGA | 8 cut(s) | 131, 239, 272, 376, 461, 464, 713, 795 |
| MflI | RGATCY | 1 cut(s) | 619 |
| MhlI | GDGCHC | 1 cut(s) | 403 |
| MluCI | AATT | 3 cut(s) | 82, 280, 842 |
| MlyI | GAGTC | 2 cut(s) | 142, 350 |
| MmeI | TCCRAC | 1 cut(s) | 155 |
| MroXI | GAANNNNTTC | 1 cut(s) | 484 |
| MseI | TTAA | 3 cut(s) | 74, 566, 856 |
| MspI | CCGG | 1 cut(s) | 26 |
| NcoI | CCATGG | 1 cut(s) | 511 |
| NdeII | GATC | 3 cut(s) | 243, 321, 619 |
| NlaIII | CATG | 6 cut(s) | 316, 364, 380, 515, 594, 728 |
| NmuCI | GTSAC | 2 cut(s) | 145, 528 |
| NspI | RCATGY | 1 cut(s) | 594 |
| PdmI | GAANNNNTTC | 1 cut(s) | 484 |
| PfeI | GAWTC | 3 cut(s) | 34, 109, 676 |
| PinAI | ACCGGT | 1 cut(s) | 25 |
| PkrI | GCNGC | 4 cut(s) | 7, 749, 769, 801 |
| PleI | GAGTC | 2 cut(s) | 142, 350 |
| PpsI | GAGTC | 2 cut(s) | 142, 350 |
| PsiI | TTATAA | 1 cut(s) | 663 |
| PspPI | GGNCC | 1 cut(s) | 508 |
| PsuI | RGATCY | 1 cut(s) | 619 |
| RsaI | GTAC | 2 cut(s) | 382, 470 |
| RsaNI | GTAC | 2 cut(s) | 381, 469 |
| SaqAI | TTAA | 3 cut(s) | 74, 566, 856 |
| SatI | GCNGC | 4 cut(s) | 6, 748, 768, 800 |
| Sau3AI | GATC | 3 cut(s) | 243, 321, 619 |
| Sau96I | GGNCC | 1 cut(s) | 508 |
| SchI | GAGTC | 2 cut(s) | 142, 350 |
| SduI | GDGCHC | 1 cut(s) | 403 |
| SgrAI | CRCCGGYG | 1 cut(s) | 25 |
| SinI | GGWCC | 1 cut(s) | 508 |
| SmlI | CTYRAG | 2 cut(s) | 275, 556 |
| SmoI | CTYRAG | 2 cut(s) | 275, 556 |
| Sse9I | AATT | 3 cut(s) | 82, 280, 842 |
| SspMI | CTAG | 1 cut(s) | 573 |
| StyI | CCWWGG | 1 cut(s) | 511 |
| TaaI | ACNGT | 3 cut(s) | 175, 202, 820 |
| TasI | AATT | 3 cut(s) | 82, 280, 842 |
| TatI | WGTACW | 1 cut(s) | 468 |
| TfiI | GAWTC | 3 cut(s) | 34, 109, 676 |
| Tru1I | TTAA | 3 cut(s) | 74, 566, 856 |
| Tru9I | TTAA | 3 cut(s) | 74, 566, 856 |
| TseFI | GTSAC | 2 cut(s) | 145, 528 |
| TseI | GCWGC | 4 cut(s) | 5, 747, 767, 799 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 528 |
| TspDTI | ATGAA | 4 cut(s) | 76, 269, 377, 651 |
| TspGWI | ACGGA | 1 cut(s) | 756 |
| VpaK11BI | GGWCC | 1 cut(s) | 508 |
| XapI | RAATTY | 1 cut(s) | 82 |
| XceI | RCATGY | 1 cut(s) | 594 |
| XmnI | GAANNNNTTC | 1 cut(s) | 484 |
| XspI | CTAG | 1 cut(s) | 573 |