FvH4_6g07331

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000154
Physical Location & Seq
Reverse (-)
4405021 .. 4407171
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07331.t1

Sequence Viewer

Length: 2010 bp
ATGGATATGGTAAAGTGTATGCTGAAACTTAAGAATTTGCCAAAGGATTTTTGGGCGGAAGCCGTTGCTTGTGCTGTGTATATCTTGAACAGATCTCCCAACAACAGTGTTGAAGGAAAAACTCCTTATGAAGTATGGAGTGGAAGGAGGCCAAATATCCAACATATGAGGGTGTTTGGATGCATTGCATATGCACATGTGCCTGATCAAATTCGGAAGAAGCTTGATGACAAGGCTGAGAAATGCATCTTCATTGGCTACTGCAATGCTACAAAAGGGTACAAGCTGTATAATCCCAAGACGGAGAAAGTGATTGTCAGCCGCGATGTTATATTTGATGAGCAAAACAAGTGGGATTGGTCTTCAGAAGAAAGCACGGCAGGAGCATTCATTCCATTTGATGAAGTTGAAGTCCAGGAAGAAGATGTCCCCGCAGCTCAATCATCAGTCCCTGCAGCTCATGAATCAGAATCAGGACGCCAACAACGTAATCACCGTTTGCCAACACGTCTCCAAAACTATCACATCAATAATGACAATGAAGCATCTGATGAAGAAATTGTGAATTTTGCACTTTATGCTGATTGTGATCCCCTCACATTTGAAGAAGCCTGCCAGCATGAACATTGGTTGAAGGCGATGGATGAAGAAATACATTCCATTGAGAAGAATGATACGTGGGAGCTAACTTCTCTTCCTAAGGGAAAAACACCCATTGGAGTTAAGTGGGTGTACAAGACAAAGTACAAGCCAGATGGAGAAGTAGATCGGTTCAAGGCGAGGCTGGTGGCAAAAGGCTACAAACAAAAGCCAGATATTGATTATCTTGAGGTTTTTGCTCCTCTTGCTAGACTTGATACTGTGAGGATGATTGTTGCTCTTGCTGCTCATAATTCTTGGAAAATATTCCAAATGGATGTTGAGTCTGCTTTTTTGAATGGTAATCTTGAGGAGGAGGTGTATATTGAGCAGCCTGCAGGTTATGTGAAGGAAGGTCAAGCTGACATGGTGTATATGTTGAAAAAGGCATTGTTTGGCCTTAAGCAATCACTGCGAGCGTGCAACATGGAGTTGATAGCTGGATGCAGGGAGGCCTTAACTTCTCAATTTGAGATGACTGACATGGGCTTGATGTCTTATTTCCTTGGTCTTGAAGTGAGGCAAACTGAGCAGGGCATCTTTATTTCACAAAGGAAATATGCAAGAGATGCTCTTAGAAGGTTTAAGATGGAGTTTTGCAATGCAGCTCTTACTCCAGTTCAAGAAAGATTAAAGTTGGAGAAAGATGGCTCTGGAGAACTTGTTAATCCTACTCTCTACAAGCAGTTGGTTGGGAGTTTGCGCTATTTATGTAGCACCAGGCCAGATATTACATTTGGTGTTAGACTTGTTAGCAGATTCATGGAGTCCTCGCGACAATCTCATTTGATGGCAGCAAAAAGGATCCTGAAGTATGTCAAAGGTACTCAAGATAATGGCATCTTTTATTCTGCAAATTGTCCGGTAGAGCTTGTTGGTTATACAGATAGTGATTGGGGTGGTGATTATGAGGATGGAAAATGCACTTCAGGATATGTTTTTCACATTGGTTCTGGAGTTTTCTCTTGGTCATCAAAGAAGCAACAGGTTGTGACTCTTTTTATTGCCGAAGCAGAATACATAGCAGCAACTGGCTGTGCTACTCAAGCTATATGGCTGCGACGAATGCTGAGTTTTCTGCAGCAAGAACAAGAGTTTCCTACAAAGATCTTTTGTGACAACAAGGCATCAATTGTACTGTCAAAGAATCCAGTGTTTCATGGAAGGACCAAGCACATTCATGTGAAGTTTCACTATATTCGAGACTTGGTGAGTGACAAGCAAGTTGAAATTCAGTTTTGTCATTCCAAGGATCAAGCTGCAGATATCTTTACAAAGCCACTCAAGGCAAAAGCTTTCTTGAAGTTGAAGAAGATGCTGGGAATGAAGAAGTTCAGTGAGCTTGGTTTAAGGGAGGCTGTTGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

670

Amino Acids

76.49

Weight (kDa)

7.78

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 61 - 124 7.5e-30 Retroviral polymerase SH3-like domain
RVT_2 PF07727 224 - 355 9.2e-46 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 353 - 421 1.2e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccII CGCG 2 cut(s) 324, 1414
AciI CCGC 3 cut(s) 56, 322, 432
AclWI GGATC 4 cut(s) 584, 1438, 1451, 1899
AcsI RAATTY 4 cut(s) 34, 210, 565, 1869
AcuI CTGAAG 3 cut(s) 348, 1469, 1551
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 5 cut(s) 281, 734, 746, 1465, 1776
AflII CTTAAG 2 cut(s) 29, 1040
AflIII ACRYGT 2 cut(s) 196, 506
AjiI CACGTC 1 cut(s) 509
AjnI CCWGG 2 cut(s) 414, 1358
Alw26I GTCTC 2 cut(s) 515, 1836
AlwI GGATC 4 cut(s) 584, 1438, 1451, 1899
AlwNI CAGNNNCTG 2 cut(s) 452, 1670
AoxI GGCC 4 cut(s) 149, 1036, 1092, 1361
ApoI RAATTY 4 cut(s) 34, 210, 565, 1869
Asp700I GAANNNNTTC 2 cut(s) 905, 1970
AspLEI GCGC 1 cut(s) 1344
AspS9I GGNCC 1 cut(s) 1806
AsuHPI GGTGA 3 cut(s) 485, 1553, 1861
AvaII GGWCC 1 cut(s) 1806
AxyI CCTNAGG 1 cut(s) 699
BamHI GGATCC 1 cut(s) 1443
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 6 cut(s) 634, 749, 1222, 1280, 1423, 1547
BceAI ACGGC 2 cut(s) 47, 393
BciT130I CCWGG 2 cut(s) 416, 1360
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 515, 1836
BfaI CTAG 1 cut(s) 849
BfmI CTRYAG 4 cut(s) 453, 975, 1718, 1899
BfrI CTTAAG 2 cut(s) 29, 1040
BfuAI ACCTGC 1 cut(s) 968
BglII AGATCT 2 cut(s) 92, 1746
Bme1390I CCNGG 2 cut(s) 416, 1360
Bme18I GGWCC 1 cut(s) 1806
BmgBI CACGTC 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 1806
BmiI GGNNCC 1 cut(s) 1445
BmrFI CCNGG 2 cut(s) 416, 1360
BmsI GCATC 9 cut(s) 170, 255, 554, 1073, 1185, 1198, 1488, 1775, 1944
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 3 cut(s) 1239, 1314, 1614
BpuEI CTTGAG 5 cut(s) 848, 968, 1452, 1668, 1907
BsaAI YACGTR 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 1144, 1887
BsaWI WCCGGW 1 cut(s) 1501
BsaXI ACNNNNNCTCC 4 cut(s) 944, 974, 1287, 1317
Bse1I ACTGG 3 cut(s) 1256, 1675, 1790
Bse21I CCTNAGG 1 cut(s) 699
Bse3DI GCAATG 3 cut(s) 183, 271, 1246
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 2 cut(s) 416, 1360
BseDI CCNNGG 2 cut(s) 1144, 1887
BseGI GGATG 6 cut(s) 185, 649, 873, 922, 1088, 1558
BseJI GATNNNNATC 1 cut(s) 588
BseMI GCAATG 3 cut(s) 183, 271, 1246
BseMII CTCAG 3 cut(s) 228, 1158, 1700
BseNI ACTGG 3 cut(s) 1256, 1675, 1790
BseRI GAGGAG 3 cut(s) 831, 965, 968
BseYI CCCAGC 1 cut(s) 1957
Bsh1236I CGCG 2 cut(s) 324, 1414
BshFI GGCC 4 cut(s) 151, 1038, 1094, 1363
BsiSI CCGG 1 cut(s) 1502
BslFI GGGAC 2 cut(s) 413, 434
BsmAI GTCTC 2 cut(s) 515, 1836
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 2 cut(s) 413, 434
BsmI GAATGC 2 cut(s) 386, 1710
BsnI GGCC 4 cut(s) 151, 1038, 1094, 1363
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
Bsp68I TCGCGA 1 cut(s) 1414
BspACI CCGC 3 cut(s) 56, 322, 432
BspANI GGCC 4 cut(s) 151, 1038, 1094, 1363
BspCNI CTCAG 3 cut(s) 229, 1159, 1701
BspFNI CGCG 2 cut(s) 324, 1414
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 1445
BspMAI CTGCAG 4 cut(s) 457, 979, 1722, 1903
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 4 cut(s) 584, 1438, 1451, 1899
BspTI CTTAAG 2 cut(s) 29, 1040
BsrDI GCAATG 3 cut(s) 183, 271, 1246
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 3 cut(s) 1256, 1675, 1790
BssECI CCNNGG 2 cut(s) 1144, 1887
BssMI GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
BssNI GRCGYC 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 1144, 1887
Bst2UI CCWGG 2 cut(s) 416, 1360
Bst4CI ACNGT 4 cut(s) 107, 497, 862, 1779
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 1 cut(s) 478
BstAFI CTTAAG 2 cut(s) 29, 1040
BstAPI GCANNNNNTGC 3 cut(s) 578, 1051, 1208
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 678
BstC8I GCNNGC 5 cut(s) 613, 617, 975, 1056, 1060
BstDEI CTNAG 5 cut(s) 237, 699, 1167, 1214, 1709
BstF5I GGATG 6 cut(s) 185, 649, 873, 922, 1088, 1558
BstFNI CGCG 2 cut(s) 324, 1414
BstHHI GCGC 1 cut(s) 1344
BstKTI GATC 7 cut(s) 95, 208, 592, 769, 1446, 1749, 1894
BstMAI GTCTC 2 cut(s) 515, 1836
BstMBI GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
BstMWI GCNNNNNNNGC 8 cut(s) 578, 845, 884, 1051, 1168, 1208, 1685, 1705
BstNI CCWGG 2 cut(s) 416, 1360
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 414, 1358
BstSFI CTRYAG 4 cut(s) 453, 975, 1718, 1899
BstUI CGCG 2 cut(s) 324, 1414
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 3 cut(s) 92, 1443, 1746
BstYI RGATCY 3 cut(s) 92, 1443, 1746
Bsu36I CCTNAGG 1 cut(s) 699
BsuRI GGCC 4 cut(s) 151, 1038, 1094, 1363
BtgZI GCGATG 2 cut(s) 339, 653
BtrI CACGTC 1 cut(s) 509
BtsCI GGATG 6 cut(s) 185, 649, 873, 922, 1088, 1558
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 4 cut(s) 112, 1049, 1797, 1981
BtuMI TCGCGA 1 cut(s) 1414
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 5 cut(s) 613, 617, 975, 1056, 1060
CaiI CAGNNNCTG 2 cut(s) 452, 1670
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 1344
Cfr13I GGNCC 1 cut(s) 1806
CseI GACGC 1 cut(s) 486
Csp6I GTAC 5 cut(s) 280, 733, 745, 1464, 1775
CspCI CAANNNNNGTGG 2 cut(s) 332, 367
CviAII CATG 9 cut(s) 197, 461, 620, 1006, 1066, 1123, 1402, 1799, 1820
CviQI GTAC 5 cut(s) 280, 733, 745, 1464, 1775
DdeI CTNAG 5 cut(s) 237, 699, 1167, 1214, 1709
DpnI GATC 7 cut(s) 94, 207, 591, 768, 1445, 1748, 1893
DpnII GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
EciI GGCGGA 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 1144, 1887
Eco147I AGGCCT 1 cut(s) 1094
Eco32I GATATC 1 cut(s) 1906
Eco47I GGWCC 1 cut(s) 1806
Eco57I CTGAAG 3 cut(s) 348, 1469, 1551
Eco81I CCTNAGG 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 414, 1358
EcoRV GATATC 1 cut(s) 1906
EcoT14I CCWWGG 2 cut(s) 1144, 1887
EcoT22I ATGCAT 2 cut(s) 185, 248
ErhI CCWWGG 2 cut(s) 1144, 1887
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 9 cut(s) 200, 464, 623, 1009, 1069, 1126, 1405, 1802, 1823
FaqI GGGAC 2 cut(s) 413, 434
FatI CATG 9 cut(s) 196, 460, 619, 1005, 1065, 1122, 1401, 1798, 1819
FauI CCCGC 1 cut(s) 439
FauNDI CATATG 2 cut(s) 165, 190
FbaI TGATCA 1 cut(s) 205
FokI GGATG 6 cut(s) 192, 656, 880, 929, 1095, 1565
FspBI CTAG 1 cut(s) 849
GlaI GCGC 1 cut(s) 1343
GsaI CCCAGC 1 cut(s) 1961
GsuI CTGGAG 3 cut(s) 1239, 1314, 1614
HaeIII GGCC 4 cut(s) 151, 1038, 1094, 1363
HapII CCGG 1 cut(s) 1502
HgaI GACGC 1 cut(s) 486
HhaI GCGC 1 cut(s) 1344
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 9 cut(s) 200, 464, 623, 1009, 1069, 1126, 1405, 1802, 1823
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HindIII AAGCTT 2 cut(s) 221, 1932
HinfI GANTC 7 cut(s) 464, 470, 923, 1398, 1406, 1633, 1786
HpaII CCGG 1 cut(s) 1502
HphI GGTGA 3 cut(s) 485, 1553, 1861
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 4 cut(s) 216, 367, 469, 550
Hpy8I GTNNAC 1 cut(s) 733
Hpy99I CGWCG 1 cut(s) 1704
HpyAV CCTTC 7 cut(s) 107, 138, 628, 982, 986, 1212, 1797
HpyCH4III ACNGT 4 cut(s) 107, 497, 862, 1779
HpyCH4IV ACGT 3 cut(s) 487, 508, 677
HpyF10VI GCNNNNNNNGC 8 cut(s) 578, 845, 884, 1051, 1168, 1208, 1685, 1705
HpyF3I CTNAG 5 cut(s) 237, 699, 1167, 1214, 1709
HpySE526I ACGT 3 cut(s) 487, 508, 677
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 9 cut(s) 200, 464, 623, 1009, 1069, 1126, 1405, 1802, 1823
HspAI GCGC 1 cut(s) 1342
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
LmnI GCTCC 3 cut(s) 383, 682, 844
LweI GCATC 9 cut(s) 170, 255, 554, 1073, 1185, 1198, 1488, 1775, 1944
MaeI CTAG 1 cut(s) 849
MaeII ACGT 3 cut(s) 487, 508, 677
MaeIII GTNAC 3 cut(s) 1630, 1754, 1853
MalI GATC 7 cut(s) 94, 207, 591, 768, 1445, 1748, 1893
MboI GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
MfeI CAATTG 1 cut(s) 1770
MflI RGATCY 3 cut(s) 92, 1443, 1746
MluCI AATT 9 cut(s) 34, 210, 558, 565, 892, 1106, 1495, 1770, 1869
MlyI GAGTC 3 cut(s) 932, 1415, 1627
MmeI TCCRAC 3 cut(s) 184, 1257, 1981
Mph1103I ATGCAT 2 cut(s) 185, 248
MroXI GAANNNNTTC 2 cut(s) 905, 1970
MseI TTAA 9 cut(s) 30, 723, 1041, 1097, 1224, 1271, 1305, 1988, 2008
MslI CAYNNNNRTG 2 cut(s) 1818, 1820
MspCI CTTAAG 2 cut(s) 29, 1040
MspI CCGG 1 cut(s) 1502
MspR9I CCNGG 2 cut(s) 416, 1360
MunI CAATTG 1 cut(s) 1770
Mva1269I GAATGC 2 cut(s) 386, 1710
MvaI CCWGG 2 cut(s) 416, 1360
MvnI CGCG 2 cut(s) 324, 1414
MwoI GCNNNNNNNGC 8 cut(s) 578, 845, 884, 1051, 1168, 1208, 1685, 1705
NdeI CATATG 2 cut(s) 165, 190
NdeII GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
NlaIII CATG 9 cut(s) 200, 464, 623, 1009, 1069, 1126, 1405, 1802, 1823
NlaIV GGNNCC 1 cut(s) 1445
NmuCI GTSAC 3 cut(s) 1630, 1754, 1853
NruI TCGCGA 1 cut(s) 1414
NsiI ATGCAT 2 cut(s) 185, 248
NspI RCATGY 1 cut(s) 200
PagI TCATGA 1 cut(s) 460
PceI AGGCCT 1 cut(s) 1094
PciI ACATGT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 2 cut(s) 484, 493
PctI GAATGC 2 cut(s) 386, 1710
PdmI GAANNNNTTC 2 cut(s) 905, 1970
PfeI GAWTC 4 cut(s) 464, 470, 1398, 1786
PfoI TCCNGGA 1 cut(s) 414
PleI GAGTC 3 cut(s) 931, 1414, 1627
PpsI GAGTC 3 cut(s) 931, 1414, 1627
Ppu21I YACGTR 1 cut(s) 678
PscI ACATGT 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 414, 1358
PspFI CCCAGC 1 cut(s) 1957
PspGI CCWGG 2 cut(s) 414, 1358
PspN4I GGNNCC 1 cut(s) 1445
PspPI GGNCC 1 cut(s) 1806
PstI CTGCAG 4 cut(s) 457, 979, 1722, 1903
PstNI CAGNNNCTG 2 cut(s) 452, 1670
PsuI RGATCY 3 cut(s) 92, 1443, 1746
RruI TCGCGA 1 cut(s) 1414
RsaI GTAC 5 cut(s) 281, 734, 746, 1465, 1776
RsaNI GTAC 5 cut(s) 280, 733, 745, 1464, 1775
RseI CAYNNNNRTG 2 cut(s) 1818, 1820
SaqAI TTAA 9 cut(s) 30, 723, 1041, 1097, 1224, 1271, 1305, 1988, 2008
Sau3AI GATC 7 cut(s) 92, 205, 589, 766, 1443, 1746, 1891
Sau96I GGNCC 1 cut(s) 1806
SbfI CCTGCAGG 1 cut(s) 979
SchI GAGTC 3 cut(s) 932, 1415, 1627
ScrFI CCNGG 2 cut(s) 416, 1360
SdaI CCTGCAGG 1 cut(s) 979
SfaNI GCATC 9 cut(s) 170, 255, 554, 1073, 1185, 1198, 1488, 1775, 1944
SfcI CTRYAG 4 cut(s) 453, 975, 1718, 1899
SinI GGWCC 1 cut(s) 1806
SmiMI CAYNNNNRTG 2 cut(s) 1818, 1820
SmlI CTYRAG 7 cut(s) 29, 827, 947, 1040, 1467, 1683, 1922
SmoI CTYRAG 7 cut(s) 29, 827, 947, 1040, 1467, 1683, 1922
Sse8387I CCTGCAGG 1 cut(s) 979
Sse9I AATT 9 cut(s) 34, 210, 558, 565, 892, 1106, 1495, 1770, 1869
SseBI AGGCCT 1 cut(s) 1094
SsiI CCGC 3 cut(s) 56, 322, 432
SspI AATATT 1 cut(s) 906
SspMI CTAG 1 cut(s) 849
StuI AGGCCT 1 cut(s) 1094
StyD4I CCNGG 2 cut(s) 414, 1358
StyI CCWWGG 2 cut(s) 1144, 1887
TaaI ACNGT 4 cut(s) 107, 497, 862, 1779
TaiI ACGT 3 cut(s) 490, 511, 680
TaqI TCGA 1 cut(s) 1840
TasI AATT 9 cut(s) 34, 210, 558, 565, 892, 1106, 1495, 1770, 1869
TatI WGTACW 3 cut(s) 732, 744, 1774
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 4 cut(s) 464, 470, 1398, 1786
Tru1I TTAA 9 cut(s) 30, 723, 1041, 1097, 1224, 1271, 1305, 1988, 2008
Tru9I TTAA 9 cut(s) 30, 723, 1041, 1097, 1224, 1271, 1305, 1988, 2008
TscAI CASTG 4 cut(s) 112, 1056, 1797, 1981
TseFI GTSAC 3 cut(s) 1630, 1754, 1853
Tsp45I GTSAC 3 cut(s) 1630, 1754, 1853
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 4 cut(s) 112, 1056, 1797, 1981
Vha464I CTTAAG 2 cut(s) 29, 1040
VpaK11BI GGWCC 1 cut(s) 1806
XapI RAATTY 4 cut(s) 34, 210, 565, 1869
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XmnI GAANNNNTTC 2 cut(s) 905, 1970
XspI CTAG 1 cut(s) 849
Zsp2I ATGCAT 2 cut(s) 185, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.