Rw6G031260

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000154
Physical Location & Seq
Forward (+)
55240768 .. 55242592
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031260.1

Sequence Viewer

Length: 924 bp
ATGGCTGAGTTCGAGATGACTGATCTGGGAAGATTGCACTATTTTCTTGGTATAGAAGTACTACAATCATCGGCTGGAATTTTCATCACACAAAGAAAGTATGCTCTGGAAGTTTTGGAGAAATTTGAGATGAAGGATTGTAATGCAGTTGCAATTCCAGTAGAACCGGGACTGAAGTTAACTATGGATCCTGATGGCAAGAAAGTTGGTAGCACGTTCTTTAAGCAAATTGTTGGAAGTCTGATGTATCTTACAGCCACAAGGCCTGATATCATGCTTTCAGTAAGTCTCATTAGCAGGTTTATGGAACGTCCAACAGAGCAACATCTCTCTGCTGCAAAAAGAATCTTGCGCTATGTAAAAGGTACATTTGATTTTGGTGTTCTTTATAAGAGGGGAGAAAAGTCAGAGCTTGTTGGATTCACAGATAGTGATTATGCTGGTGATGTTAATGATAGAAGAAGCACATCTGCTTATGTTTTTATGATGGGGTCAGGACCAGTTTCATGGGCTTCAAAGAAACAGCCAATTGTGACCTTATCAACTACGGAGGCTGAGTTTGTCGCAGCAACAGCTTGTGCTAGTCAGGCCATTTGGCTGAGGAAGTTGCTTGAGGAGTTGAGTTATGAGCAACAAGGTCCAACAACAATTTATTGCGACAACATATCTGCAATCAAGCTCTCAAAGAATCTGGTTTTTCATGGAAGGAGCAAGCATATAGATGTCTACTGGGTGTGTGTTCAAGGAAAGAAGTGGTTGGCAATGGAGCAGATGAAGGGCAATAAATTCAAACGCCTGAATCCGGTCACTAGTCCTGTAGCCGGATTCTGGATTTTGGTGACCGGTCGCCAGAGTCAGTCATCGGTCCAGGTCACTGGTCACCGGAGTCCAGCAAGGTCTCCGATGACATCTCTCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 gag_pre-integrs rve

Protein Analysis

307

Amino Acids

34.38

Weight (kDa)

9.36

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 55 8.8e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 726
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 3 cut(s) 78, 122, 785
AcuI CTGAAG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 921
AfaI GTAC 2 cut(s) 60, 367
AfiI CCNNNNNNNGG 3 cut(s) 802, 821, 828
AgeI ACCGGT 1 cut(s) 842
AgsI TTSAA 3 cut(s) 516, 743, 790
AhlI ACTAGT 1 cut(s) 809
AjnI CCWGG 1 cut(s) 867
AluBI AGCT 3 cut(s) 412, 575, 679
AluI AGCT 3 cut(s) 412, 575, 679
Alw26I GTCTC 2 cut(s) 293, 903
AlwI GGATC 2 cut(s) 182, 195
AoxI GGCC 2 cut(s) 263, 588
ApeKI GCWGC 2 cut(s) 335, 566
ApoI RAATTY 3 cut(s) 78, 122, 785
AsiGI ACCGGT 1 cut(s) 842
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 497, 638, 865
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 4 cut(s) 455, 850, 872, 907
AvaII GGWCC 3 cut(s) 497, 638, 865
BamHI GGATCC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 322, 578
BccI CCATC 2 cut(s) 188, 481
BciT130I CCWGG 1 cut(s) 869
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 293, 903
BcuI ACTAGT 1 cut(s) 809
BfaI CTAG 2 cut(s) 582, 810
BfmI CTRYAG 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 336, 567
BlsI GCNGC 2 cut(s) 337, 568
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 168, 869
Bme18I GGWCC 3 cut(s) 497, 638, 865
BmgT120I GGNCC 3 cut(s) 497, 638, 865
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 168, 869
BmrI ACTGGG 1 cut(s) 739
BmuI ACTGGG 1 cut(s) 739
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 903
BsaWI WCCGGW 3 cut(s) 802, 842, 882
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 3 cut(s) 802, 821, 828
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 158, 500, 734, 880
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 1 cut(s) 869
BseLI CCNNNNNNNGG 3 cut(s) 802, 821, 828
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 546, 590
BseNI ACTGG 4 cut(s) 158, 500, 734, 880
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 2 cut(s) 322, 578
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 2 cut(s) 265, 590
BshTI ACCGGT 1 cut(s) 842
BsiEI CGRYCG 1 cut(s) 847
BsiSI CCGG 5 cut(s) 167, 803, 822, 843, 883
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 802, 821, 828
BsmAI GTCTC 2 cut(s) 293, 903
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 265, 590
Bso31I GGTCTC 1 cut(s) 903
Bsp143I GATC 2 cut(s) 22, 187
BspANI GGCC 2 cut(s) 265, 590
BspCNI CTCAG 2 cut(s) 547, 591
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 182, 195
BspTNI GGTCTC 1 cut(s) 903
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 4 cut(s) 158, 500, 734, 880
BssAI RCCGGY 1 cut(s) 842
BssMI GATC 2 cut(s) 22, 187
Bst2UI CCWGG 1 cut(s) 869
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 3 cut(s) 6, 555, 599
BstEII GGTNACC 2 cut(s) 838, 878
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 2 cut(s) 25, 190
BstMAI GTCTC 2 cut(s) 293, 903
BstMBI GATC 2 cut(s) 22, 187
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 2 cut(s) 572, 587
BstNI CCWGG 1 cut(s) 869
BstPI GGTNACC 2 cut(s) 838, 878
BstSCI CCNGG 2 cut(s) 166, 867
BstSFI CTRYAG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 322, 578
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 2 cut(s) 507, 875
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 2 cut(s) 265, 590
BtsIMutI CAGTG 1 cut(s) 873
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 713
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 3 cut(s) 497, 638, 865
Csp6I GTAC 2 cut(s) 59, 366
CspAI ACCGGT 1 cut(s) 842
CviAII CATG 3 cut(s) 274, 507, 701
CviQI GTAC 2 cut(s) 59, 366
DdeI CTNAG 3 cut(s) 6, 555, 599
DpnI GATC 2 cut(s) 24, 189
DpnII GATC 2 cut(s) 22, 187
DraIII CACNNNGTG 1 cut(s) 921
Eco147I AGGCCT 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 903
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 3 cut(s) 497, 638, 865
Eco57I CTGAAG 1 cut(s) 194
Eco91I GGTNACC 2 cut(s) 838, 878
EcoO65I GGTNACC 2 cut(s) 838, 878
EcoRII CCWGG 1 cut(s) 867
EcoRV GATATC 1 cut(s) 271
FaeI CATG 3 cut(s) 277, 510, 704
FaqI GGGAC 1 cut(s) 183
FatI CATG 3 cut(s) 273, 506, 700
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 2 cut(s) 336, 567
Fsp4HI GCNGC 2 cut(s) 336, 567
FspBI CTAG 2 cut(s) 582, 810
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 336, 567
HaeIII GGCC 2 cut(s) 265, 590
HapII CCGG 5 cut(s) 167, 803, 822, 843, 883
HhaI GCGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 277, 510, 704
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 7 cut(s) 345, 420, 688, 799, 825, 853, 886
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 5 cut(s) 167, 803, 822, 843, 883
HphI GGTGA 4 cut(s) 455, 850, 872, 907
Hpy166II GTNNAC 2 cut(s) 180, 727
Hpy188I TCNGA 3 cut(s) 243, 409, 903
Hpy188III TCNNGA 5 cut(s) 13, 107, 191, 495, 829
Hpy8I GTNNAC 2 cut(s) 180, 727
HpyAV CCTTC 3 cut(s) 127, 699, 769
HpyCH4IV ACGT 2 cut(s) 215, 310
HpyCH4V TGCA 5 cut(s) 37, 146, 152, 338, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 587
HpyF3I CTNAG 3 cut(s) 6, 555, 599
HpySE526I ACGT 2 cut(s) 215, 310
Hsp92II CATG 3 cut(s) 277, 510, 704
HspAI GCGC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 22, 187
LmnI GCTCC 2 cut(s) 708, 766
Lsp1109I GCAGC 2 cut(s) 322, 578
MaeI CTAG 2 cut(s) 582, 810
MaeII ACGT 2 cut(s) 215, 310
MaeIII GTNAC 5 cut(s) 532, 805, 838, 871, 878
MalI GATC 2 cut(s) 24, 189
MboI GATC 2 cut(s) 22, 187
MboII GAAGA 2 cut(s) 42, 471
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 187
MluCI AATT 7 cut(s) 78, 122, 153, 228, 528, 648, 785
MlyI GAGTC 2 cut(s) 862, 895
MmeI TCCRAC 4 cut(s) 214, 338, 397, 665
MnlI CCTC 4 cut(s) 387, 544, 594, 607
MseI TTAA 3 cut(s) 179, 222, 450
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 5 cut(s) 167, 803, 822, 843, 883
MspR9I CCNGG 2 cut(s) 168, 869
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 869
MwoI GCNNNNNNNGC 2 cut(s) 572, 587
NciI CCSGG 1 cut(s) 168
NdeII GATC 2 cut(s) 22, 187
NlaIII CATG 3 cut(s) 277, 510, 704
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 5 cut(s) 532, 805, 838, 871, 878
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 5 cut(s) 345, 420, 688, 799, 825
PinAI ACCGGT 1 cut(s) 842
PkrI GCNGC 2 cut(s) 337, 568
PleI GAGTC 2 cut(s) 861, 894
PpsI GAGTC 2 cut(s) 861, 894
PsiI TTATAA 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 867
PspEI GGTNACC 2 cut(s) 838, 878
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 497, 638, 865
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 60, 367
RsaNI GTAC 2 cut(s) 59, 366
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 3 cut(s) 179, 222, 450
SatI GCNGC 2 cut(s) 336, 567
Sau3AI GATC 2 cut(s) 22, 187
Sau96I GGNCC 3 cut(s) 497, 638, 865
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 2 cut(s) 862, 895
ScrFI CCNGG 2 cut(s) 168, 869
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 3 cut(s) 497, 638, 865
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SpeI ACTAGT 1 cut(s) 809
Sse9I AATT 7 cut(s) 78, 122, 153, 228, 528, 648, 785
SseBI AGGCCT 1 cut(s) 265
SspMI CTAG 2 cut(s) 582, 810
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 166, 867
TaiI ACGT 2 cut(s) 218, 313
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 853
TasI AATT 7 cut(s) 78, 122, 153, 228, 528, 648, 785
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 5 cut(s) 345, 420, 688, 799, 825
Tru1I TTAA 3 cut(s) 179, 222, 450
Tru9I TTAA 3 cut(s) 179, 222, 450
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 5 cut(s) 532, 805, 838, 871, 878
TseI GCWGC 2 cut(s) 335, 566
Tsp45I GTSAC 5 cut(s) 532, 805, 838, 871, 878
TspDTI ATGAA 5 cut(s) 73, 146, 495, 689, 788
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 880
VpaK11BI GGWCC 3 cut(s) 497, 638, 865
XapI RAATTY 3 cut(s) 78, 122, 785
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 2 cut(s) 582, 810
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.