Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 20 - 182 | 2.7e-22 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 336 - 415 | 3e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 454 - 511 | 2.1e-11 | GAG-pre-integrase domain |
| rve | PF00665 | 526 - 627 | 7.6e-16 | Integrase core domain |
| SH3_retrovirus | PF25597 | 703 - 744 | 3.7e-06 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 816 - 928 | 1.1e-38 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 927 - 993 | 3.1e-10 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1266, 2601 |
| Acc65I | GGTACC | 1 cut(s) | 1189 |
| AccB1I | GGYRCC | 1 cut(s) | 1189 |
| AccI | GTMKAC | 1 cut(s) | 1998 |
| AciI | CCGC | 2 cut(s) | 163, 3020 |
| AclWI | GGATC | 4 cut(s) | 231, 679, 869, 2542 |
| AcoI | YGGCCR | 1 cut(s) | 1423 |
| AcuI | CTGAAG | 4 cut(s) | 102, 302, 1002, 2951 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1554 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2956 |
| AjnI | CCWGG | 6 cut(s) | 844, 949, 1004, 1192, 2071, 2655 |
| AleI | CACNNNNGTG | 3 cut(s) | 146, 795, 834 |
| Alw21I | GWGCWC | 1 cut(s) | 16 |
| Alw26I | GTCTC | 2 cut(s) | 1696, 2128 |
| AlwI | GGATC | 4 cut(s) | 231, 679, 869, 2542 |
| Ama87I | CYCGRG | 1 cut(s) | 3156 |
| AoxI | GGCC | 1 cut(s) | 1423 |
| ApeKI | GCWGC | 4 cut(s) | 383, 1858, 2387, 2660 |
| AseI | ATTAAT | 2 cut(s) | 572, 2648 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 689, 1209 |
| Asp718I | GGTACC | 1 cut(s) | 1189 |
| AsuC2I | CCSGG | 1 cut(s) | 2589 |
| AsuHPI | GGTGA | 2 cut(s) | 809, 1988 |
| AsuII | TTCGAA | 1 cut(s) | 55 |
| AsuNHI | GCTAGC | 1 cut(s) | 611 |
| AvaI | CYCGRG | 1 cut(s) | 3156 |
| BalI | TGGCCA | 1 cut(s) | 1425 |
| BanI | GGYRCC | 1 cut(s) | 1189 |
| BanII | GRGCYC | 2 cut(s) | 16, 196 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3168, 3200 |
| BauI | CACGAG | 1 cut(s) | 80 |
| BbsI | GAAGAC | 2 cut(s) | 1949, 3176 |
| Bbv12I | GWGCWC | 1 cut(s) | 16 |
| BbvI | GCAGC | 4 cut(s) | 370, 1870, 2374, 2672 |
| BccI | CCATC | 6 cut(s) | 1921, 2482, 2525, 2747, 2785, 2999 |
| BceAI | ACGGC | 2 cut(s) | 200, 3165 |
| BciT130I | CCWGG | 6 cut(s) | 846, 951, 1006, 1194, 2073, 2657 |
| BciVI | GTATCC | 1 cut(s) | 2626 |
| BclI | TGATCA | 2 cut(s) | 2299, 2743 |
| BcnI | CCSGG | 1 cut(s) | 2589 |
| BcoDI | GTCTC | 2 cut(s) | 1696, 2128 |
| BfaI | CTAG | 8 cut(s) | 380, 396, 612, 858, 2271, 2556, 2723, 3089 |
| BfmI | CTRYAG | 1 cut(s) | 1917 |
| BfuI | GTATCC | 1 cut(s) | 2626 |
| BglII | AGATCT | 1 cut(s) | 439 |
| BisI | GCNGC | 4 cut(s) | 384, 1859, 2388, 2661 |
| BlpI | GCTNAGC | 1 cut(s) | 885 |
| BlsI | GCNGC | 4 cut(s) | 385, 1860, 2389, 2662 |
| BmcAI | AGTACT | 1 cut(s) | 2968 |
| Bme1390I | CCNGG | 7 cut(s) | 846, 951, 1006, 1194, 2073, 2589, 2657 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2956 |
| BmeT110I | CYCGRG | 1 cut(s) | 3156 |
| BmiI | GGNNCC | 4 cut(s) | 214, 1135, 1191, 2979 |
| BmrFI | CCNGG | 7 cut(s) | 846, 951, 1006, 1194, 2073, 2589, 2657 |
| BmsI | GCATC | 8 cut(s) | 175, 411, 517, 991, 1325, 1399, 2297, 2805 |
| BmtI | GCTAGC | 1 cut(s) | 615 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1708 |
| BpiI | GAAGAC | 2 cut(s) | 1949, 3176 |
| BpmI | CTGGAG | 2 cut(s) | 780, 1588 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 885 |
| Bpu14I | TTCGAA | 1 cut(s) | 55 |
| BpuEI | CTTGAG | 3 cut(s) | 1720, 2107, 2152 |
| BpuMI | CCSGG | 1 cut(s) | 2589 |
| Bsa29I | ATCGAT | 1 cut(s) | 1645 |
| BsaJI | CCNNGG | 4 cut(s) | 249, 1137, 1553, 2655 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1554 |
| Bse1I | ACTGG | 2 cut(s) | 670, 763 |
| Bse3DI | GCAATG | 2 cut(s) | 240, 483 |
| BseBI | CCWGG | 6 cut(s) | 846, 951, 1006, 1194, 2073, 2657 |
| BseCI | ATCGAT | 1 cut(s) | 1645 |
| BseDI | CCNNGG | 4 cut(s) | 249, 1137, 1553, 2655 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1554 |
| BseMI | GCAATG | 2 cut(s) | 240, 483 |
| BseMII | CTCAG | 6 cut(s) | 135, 899, 1228, 1614, 2306, 2874 |
| BseNI | ACTGG | 2 cut(s) | 670, 763 |
| BseRI | GAGGAG | 5 cut(s) | 1064, 1812, 1815, 2900, 3144 |
| BseXI | GCAGC | 4 cut(s) | 370, 1870, 2374, 2672 |
| BsgI | GTGCAG | 2 cut(s) | 1045, 2373 |
| BshFI | GGCC | 1 cut(s) | 1425 |
| BshNI | GGYRCC | 1 cut(s) | 1189 |
| BshVI | ATCGAT | 1 cut(s) | 1645 |
| BsiHKAI | GWGCWC | 1 cut(s) | 16 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3156 |
| BsiSI | CCGG | 3 cut(s) | 17, 2589, 2750 |
| BslFI | GGGAC | 2 cut(s) | 314, 3028 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1554 |
| BsmAI | GTCTC | 2 cut(s) | 1696, 2128 |
| BsmFI | GGGAC | 2 cut(s) | 314, 3028 |
| BsmI | GAATGC | 2 cut(s) | 1584, 2705 |
| BsnI | GGCC | 1 cut(s) | 1425 |
| BsoBI | CYCGRG | 1 cut(s) | 3156 |
| Bsp119I | TTCGAA | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 196 |
| Bsp1407I | TGTACA | 2 cut(s) | 2508, 2764 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 885 |
| BspACI | CCGC | 2 cut(s) | 163, 3020 |
| BspANI | GGCC | 1 cut(s) | 1425 |
| BspCNI | CTCAG | 6 cut(s) | 136, 898, 1227, 1613, 2305, 2875 |
| BspDI | ATCGAT | 1 cut(s) | 1645 |
| BspHI | TCATGA | 1 cut(s) | 1945 |
| BspLI | GGNNCC | 4 cut(s) | 214, 1135, 1191, 2979 |
| BspOI | GCTAGC | 1 cut(s) | 615 |
| BspPI | GGATC | 4 cut(s) | 231, 679, 869, 2542 |
| BspT104I | TTCGAA | 1 cut(s) | 55 |
| BspT107I | GGYRCC | 1 cut(s) | 1189 |
| BsrDI | GCAATG | 2 cut(s) | 240, 483 |
| BsrGI | TGTACA | 2 cut(s) | 2508, 2764 |
| BsrI | ACTGG | 2 cut(s) | 670, 763 |
| BssECI | CCNNGG | 4 cut(s) | 249, 1137, 1553, 2655 |
| BssSI | CACGAG | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 3 cut(s) | 249, 1137, 1553 |
| Bst2BI | CACGAG | 1 cut(s) | 80 |
| Bst2UI | CCWGG | 6 cut(s) | 846, 951, 1006, 1194, 2073, 2657 |
| Bst4CI | ACNGT | 7 cut(s) | 779, 1019, 1419, 1499, 1830, 1867, 2954 |
| Bst6I | CTCTTC | 1 cut(s) | 965 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1453 |
| BstAUI | TGTACA | 2 cut(s) | 2508, 2764 |
| BstBI | TTCGAA | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 4 cut(s) | 613, 769, 1024, 3124 |
| BstEII | GGTNACC | 1 cut(s) | 1479 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1552 |
| BstMAI | GTCTC | 2 cut(s) | 1696, 2128 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 266, 392, 1453, 2621, 2660, 3026 |
| BstNI | CCWGG | 6 cut(s) | 846, 951, 1006, 1194, 2073, 2657 |
| BstNSI | RCATGY | 1 cut(s) | 771 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1708 |
| BstPI | GGTNACC | 1 cut(s) | 1479 |
| BstSCI | CCNGG | 7 cut(s) | 844, 949, 1004, 1192, 2071, 2587, 2655 |
| BstSFI | CTRYAG | 1 cut(s) | 1917 |
| BstV1I | GCAGC | 4 cut(s) | 370, 1870, 2374, 2672 |
| BstV2I | GAAGAC | 2 cut(s) | 1949, 3176 |
| BstX2I | RGATCY | 2 cut(s) | 439, 861 |
| BstYI | RGATCY | 2 cut(s) | 439, 861 |
| Bsu15I | ATCGAT | 1 cut(s) | 1645 |
| BsuI | GTATCC | 1 cut(s) | 2626 |
| BsuRI | GGCC | 1 cut(s) | 1425 |
| BsuTUI | ATCGAT | 1 cut(s) | 1645 |
| BtsI | GCAGTG | 1 cut(s) | 716 |
| BtsIMutI | CAGTG | 9 cut(s) | 141, 716, 756, 1024, 1222, 1504, 1779, 2065, 2967 |
| Cac8I | GCNNGC | 4 cut(s) | 613, 769, 1024, 3124 |
| CciI | TCATGA | 1 cut(s) | 1945 |
| ClaI | ATCGAT | 1 cut(s) | 1645 |
| CseI | GACGC | 1 cut(s) | 326 |
| CsiI | ACCWGGT | 1 cut(s) | 844 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 649, 684, 1287, 1322, 3087, 3122 |
| DraI | TTTAAA | 1 cut(s) | 2803 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2956 |
| EaeI | YGGCCR | 1 cut(s) | 1423 |
| Eam1104I | CTCTTC | 1 cut(s) | 965 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2956 |
| EarI | CTCTTC | 1 cut(s) | 965 |
| Ecl136II | GAGCTC | 1 cut(s) | 14 |
| Eco130I | CCWWGG | 3 cut(s) | 249, 1137, 1553 |
| Eco24I | GRGCYC | 2 cut(s) | 16, 196 |
| Eco32I | GATATC | 1 cut(s) | 622 |
| Eco53kI | GAGCTC | 1 cut(s) | 14 |
| Eco57I | CTGAAG | 4 cut(s) | 102, 302, 1002, 2951 |
| Eco88I | CYCGRG | 1 cut(s) | 3156 |
| Eco91I | GGTNACC | 1 cut(s) | 1479 |
| EcoICRI | GAGCTC | 1 cut(s) | 14 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1552 |
| EcoO65I | GGTNACC | 1 cut(s) | 1479 |
| EcoRI | GAATTC | 1 cut(s) | 2076 |
| EcoRII | CCWGG | 6 cut(s) | 844, 949, 1004, 1192, 2071, 2655 |
| EcoRV | GATATC | 1 cut(s) | 622 |
| EcoT14I | CCWWGG | 3 cut(s) | 249, 1137, 1553 |
| EcoT22I | ATGCAT | 2 cut(s) | 242, 1494 |
| EcoT38I | GRGCYC | 2 cut(s) | 16, 196 |
| ErhI | CCWWGG | 3 cut(s) | 249, 1137, 1553 |
| FaqI | GGGAC | 2 cut(s) | 314, 3028 |
| FauNDI | CATATG | 1 cut(s) | 475 |
| FbaI | TGATCA | 2 cut(s) | 2299, 2743 |
| FblI | GTMKAC | 1 cut(s) | 1998 |
| Fnu4HI | GCNGC | 4 cut(s) | 384, 1859, 2388, 2661 |
| FriOI | GRGCYC | 2 cut(s) | 16, 196 |
| Fsp4HI | GCNGC | 4 cut(s) | 384, 1859, 2388, 2661 |
| FspBI | CTAG | 8 cut(s) | 380, 396, 612, 858, 2271, 2556, 2723, 3089 |
| GluI | GCNGC | 4 cut(s) | 384, 1859, 2388, 2661 |
| GsuI | CTGGAG | 2 cut(s) | 780, 1588 |
| HaeIII | GGCC | 1 cut(s) | 1425 |
| HapII | CCGG | 3 cut(s) | 17, 2589, 2750 |
| HgaI | GACGC | 1 cut(s) | 326 |
| HindIII | AAGCTT | 3 cut(s) | 267, 1839, 2128 |
| HpaII | CCGG | 3 cut(s) | 17, 2589, 2750 |
| HphI | GGTGA | 2 cut(s) | 809, 1988 |
| Hpy166II | GTNNAC | 8 cut(s) | 464, 714, 726, 1999, 2509, 2720, 3109, 3141 |
| Hpy8I | GTNNAC | 8 cut(s) | 464, 714, 726, 1999, 2509, 2720, 3109, 3141 |
| Hpy99I | CGWCG | 1 cut(s) | 342 |
| HpyAV | CCTTC | 3 cut(s) | 125, 1220, 1496 |
| HpyCH4III | ACNGT | 7 cut(s) | 779, 1019, 1419, 1499, 1830, 1867, 2954 |
| HpyCH4IV | ACGT | 2 cut(s) | 601, 3071 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 266, 392, 1453, 2621, 2660, 3026 |
| HpySE526I | ACGT | 2 cut(s) | 601, 3071 |
| KpnI | GGTACC | 1 cut(s) | 1193 |
| Ksp22I | TGATCA | 2 cut(s) | 2299, 2743 |
| LmnI | GCTCC | 4 cut(s) | 19, 212, 1459, 3119 |
| Lsp1109I | GCAGC | 4 cut(s) | 370, 1870, 2374, 2672 |
| LweI | GCATC | 8 cut(s) | 175, 411, 517, 991, 1325, 1399, 2297, 2805 |
| MabI | ACCWGGT | 1 cut(s) | 844 |
| MaeI | CTAG | 8 cut(s) | 380, 396, 612, 858, 2271, 2556, 2723, 3089 |
| MaeII | ACGT | 2 cut(s) | 601, 3071 |
| MaeIII | GTNAC | 8 cut(s) | 3, 827, 1053, 1479, 1654, 1987, 2038, 2273 |
| MfeI | CAATTG | 3 cut(s) | 1451, 2687, 3199 |
| MflI | RGATCY | 2 cut(s) | 439, 861 |
| MhlI | GDGCHC | 2 cut(s) | 16, 196 |
| MlsI | TGGCCA | 1 cut(s) | 1425 |
| MluNI | TGGCCA | 1 cut(s) | 1425 |
| MlyI | GAGTC | 3 cut(s) | 1568, 2270, 2838 |
| MmeI | TCCRAC | 1 cut(s) | 2610 |
| Mox20I | TGGCCA | 1 cut(s) | 1425 |
| Mph1103I | ATGCAT | 2 cut(s) | 242, 1494 |
| MroXI | GAANNNNTTC | 2 cut(s) | 689, 1209 |
| MscI | TGGCCA | 1 cut(s) | 1425 |
| MseI | TTAA | 6 cut(s) | 572, 822, 1080, 2211, 2648, 2802 |
| MslI | CAYNNNNRTG | 5 cut(s) | 146, 795, 834, 1497, 1602 |
| Msp20I | TGGCCA | 1 cut(s) | 1425 |
| MspI | CCGG | 3 cut(s) | 17, 2589, 2750 |
| MspR9I | CCNGG | 7 cut(s) | 846, 951, 1006, 1194, 2073, 2589, 2657 |
| MunI | CAATTG | 3 cut(s) | 1451, 2687, 3199 |
| Mva1269I | GAATGC | 2 cut(s) | 1584, 2705 |
| MvaI | CCWGG | 6 cut(s) | 846, 951, 1006, 1194, 2073, 2657 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 266, 392, 1453, 2621, 2660, 3026 |
| NciI | CCSGG | 1 cut(s) | 2589 |
| NdeI | CATATG | 1 cut(s) | 475 |
| NheI | GCTAGC | 1 cut(s) | 611 |
| NlaIV | GGNNCC | 4 cut(s) | 214, 1135, 1191, 2979 |
| NmuCI | GTSAC | 3 cut(s) | 827, 2038, 2273 |
| NsiI | ATGCAT | 2 cut(s) | 242, 1494 |
| NspI | RCATGY | 1 cut(s) | 771 |
| NspV | TTCGAA | 1 cut(s) | 55 |
| OliI | CACNNNNGTG | 3 cut(s) | 146, 795, 834 |
| PaeI | GCATGC | 1 cut(s) | 771 |
| PaeR7I | CTCGAG | 1 cut(s) | 3156 |
| PagI | TCATGA | 1 cut(s) | 1945 |
| PctI | GAATGC | 2 cut(s) | 1584, 2705 |
| PdmI | GAANNNNTTC | 2 cut(s) | 689, 1209 |
| PfeI | GAWTC | 8 cut(s) | 52, 201, 374, 456, 1534, 2243, 2258, 2372 |
| PkrI | GCNGC | 4 cut(s) | 385, 1860, 2389, 2662 |
| PleI | GAGTC | 3 cut(s) | 1567, 2270, 2838 |
| PpsI | GAGTC | 3 cut(s) | 1567, 2270, 2838 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1708 |
| PshBI | ATTAAT | 2 cut(s) | 572, 2648 |
| PsiI | TTATAA | 2 cut(s) | 1266, 2601 |
| Psp124BI | GAGCTC | 1 cut(s) | 16 |
| Psp6I | CCWGG | 6 cut(s) | 844, 949, 1004, 1192, 2071, 2655 |
| PspEI | GGTNACC | 1 cut(s) | 1479 |
| PspGI | CCWGG | 6 cut(s) | 844, 949, 1004, 1192, 2071, 2655 |
| PspN4I | GGNNCC | 4 cut(s) | 214, 1135, 1191, 2979 |
| PspXI | VCTCGAGB | 1 cut(s) | 3156 |
| PsuI | RGATCY | 2 cut(s) | 439, 861 |
| RseI | CAYNNNNRTG | 5 cut(s) | 146, 795, 834, 1497, 1602 |
| SacI | GAGCTC | 1 cut(s) | 16 |
| SaqAI | TTAA | 6 cut(s) | 572, 822, 1080, 2211, 2648, 2802 |
| SatI | GCNGC | 4 cut(s) | 384, 1859, 2388, 2661 |
| ScaI | AGTACT | 1 cut(s) | 2968 |
| SchI | GAGTC | 3 cut(s) | 1568, 2270, 2838 |
| ScrFI | CCNGG | 7 cut(s) | 846, 951, 1006, 1194, 2073, 2589, 2657 |
| SduI | GDGCHC | 2 cut(s) | 16, 196 |
| SexAI | ACCWGGT | 1 cut(s) | 844 |
| SfaNI | GCATC | 8 cut(s) | 175, 411, 517, 991, 1325, 1399, 2297, 2805 |
| SfcI | CTRYAG | 1 cut(s) | 1917 |
| Sfr274I | CTCGAG | 1 cut(s) | 3156 |
| SfuI | TTCGAA | 1 cut(s) | 55 |
| SlaI | CTCGAG | 1 cut(s) | 3156 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 146, 795, 834, 1497, 1602 |
| SmlI | CTYRAG | 4 cut(s) | 1699, 2086, 2131, 3156 |
| SmoI | CTYRAG | 4 cut(s) | 1699, 2086, 2131, 3156 |
| SphI | GCATGC | 1 cut(s) | 771 |
| SsiI | CCGC | 2 cut(s) | 163, 3020 |
| SspI | AATATT | 1 cut(s) | 94 |
| SspMI | CTAG | 8 cut(s) | 380, 396, 612, 858, 2271, 2556, 2723, 3089 |
| SstI | GAGCTC | 1 cut(s) | 16 |
| StyD4I | CCNGG | 7 cut(s) | 844, 949, 1004, 1192, 2071, 2587, 2655 |
| StyI | CCWWGG | 3 cut(s) | 249, 1137, 1553 |
| TaaI | ACNGT | 7 cut(s) | 779, 1019, 1419, 1499, 1830, 1867, 2954 |
| TaiI | ACGT | 2 cut(s) | 604, 3074 |
| TaqI | TCGA | 6 cut(s) | 10, 39, 55, 1645, 3047, 3157 |
| TatI | WGTACW | 6 cut(s) | 1400, 2508, 2719, 2764, 2966, 3138 |
| TfiI | GAWTC | 8 cut(s) | 52, 201, 374, 456, 1534, 2243, 2258, 2372 |
| Tru1I | TTAA | 6 cut(s) | 572, 822, 1080, 2211, 2648, 2802 |
| Tru9I | TTAA | 6 cut(s) | 572, 822, 1080, 2211, 2648, 2802 |
| TscAI | CASTG | 9 cut(s) | 148, 716, 763, 1024, 1222, 1504, 1779, 2065, 2967 |
| TseFI | GTSAC | 3 cut(s) | 827, 2038, 2273 |
| TseI | GCWGC | 4 cut(s) | 383, 1858, 2387, 2660 |
| Tsp45I | GTSAC | 3 cut(s) | 827, 2038, 2273 |
| TspGWI | ACGGA | 4 cut(s) | 42, 1166, 3116, 3163 |
| TspRI | CASTG | 9 cut(s) | 148, 716, 763, 1024, 1222, 1504, 1779, 2065, 2967 |
| VspI | ATTAAT | 2 cut(s) | 572, 2648 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1552 |
| XceI | RCATGY | 1 cut(s) | 771 |
| XhoI | CTCGAG | 1 cut(s) | 3156 |
| XmiI | GTMKAC | 1 cut(s) | 1998 |
| XmnI | GAANNNNTTC | 2 cut(s) | 689, 1209 |
| XspI | CTAG | 8 cut(s) | 380, 396, 612, 858, 2271, 2556, 2723, 3089 |
| ZrmI | AGTACT | 1 cut(s) | 2968 |
| Zsp2I | ATGCAT | 2 cut(s) | 242, 1494 |