Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 29 - 181 | 1.8e-25 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 287 - 367 | 3.5e-29 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 405 - 461 | 5.1e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 476 - 574 | 4.2e-18 | Integrase core domain |
| SH3_retrovirus | PF25597 | 648 - 711 | 7e-29 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 821 - 949 | 4.1e-46 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2052 |
| Acc36I | ACCTGC | 1 cut(s) | 2179 |
| Acc65I | GGTACC | 1 cut(s) | 861 |
| AccB1I | GGYRCC | 1 cut(s) | 861 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 400 |
| AccBSI | CCGCTC | 1 cut(s) | 430 |
| AccI | GTMKAC | 3 cut(s) | 741, 1038, 2589 |
| AccIII | TCCGGA | 1 cut(s) | 2488 |
| AciI | CCGC | 2 cut(s) | 430, 1739 |
| AclWI | GGATC | 4 cut(s) | 53, 1133, 2375, 2565 |
| AcoI | YGGCCR | 1 cut(s) | 345 |
| AcsI | RAATTY | 4 cut(s) | 1282, 1315, 1787, 2442 |
| AcuI | CTGAAG | 3 cut(s) | 186, 825, 1581 |
| AdeI | CACNNNGTG | 1 cut(s) | 1484 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 400, 977, 1481 |
| AflIII | ACRYGT | 1 cut(s) | 187 |
| AjnI | CCWGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| Alw21I | GWGCWC | 4 cut(s) | 9, 1426, 1463, 2478 |
| Alw26I | GTCTC | 7 cut(s) | 60, 468, 803, 1338, 1358, 1860, 2247 |
| AlwI | GGATC | 4 cut(s) | 53, 1133, 2375, 2565 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1823 |
| Aor13HI | TCCGGA | 1 cut(s) | 2488 |
| AoxI | GGCC | 8 cut(s) | 207, 345, 366, 513, 1051, 2267, 2785, 2827 |
| ApeKI | GCWGC | 3 cut(s) | 2501, 2675, 2761 |
| ApoI | RAATTY | 4 cut(s) | 1282, 1315, 1787, 2442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| Asp718I | GGTACC | 1 cut(s) | 861 |
| AsuII | TTCGAA | 1 cut(s) | 109 |
| BalI | TGGCCA | 1 cut(s) | 347 |
| BanI | GGYRCC | 1 cut(s) | 861 |
| BanII | GRGCYC | 4 cut(s) | 9, 136, 1426, 2478 |
| BbsI | GAAGAC | 5 cut(s) | 1418, 1535, 1576, 2066, 2139 |
| Bbv12I | GWGCWC | 4 cut(s) | 9, 1426, 1463, 2478 |
| BbvCI | CCTCAGC | 1 cut(s) | 2271 |
| BbvI | GCAGC | 3 cut(s) | 2513, 2662, 2773 |
| BccI | CCATC | 4 cut(s) | 814, 1139, 1868, 2299 |
| BceAI | ACGGC | 1 cut(s) | 1747 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 314, 348, 2429, 2463 |
| BciT130I | CCWGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| BclI | TGATCA | 1 cut(s) | 2182 |
| BcoDI | GTCTC | 7 cut(s) | 60, 468, 803, 1338, 1358, 1860, 2247 |
| BfaI | CTAG | 3 cut(s) | 1860, 2249, 2640 |
| BfmI | CTRYAG | 2 cut(s) | 877, 2020 |
| BfuAI | ACCTGC | 1 cut(s) | 2179 |
| BisI | GCNGC | 3 cut(s) | 2502, 2676, 2762 |
| BlsI | GCNGC | 3 cut(s) | 2503, 2677, 2763 |
| BmcAI | AGTACT | 2 cut(s) | 1808, 1882 |
| Bme1390I | CCNGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| BmiI | GGNNCC | 2 cut(s) | 863, 1176 |
| BmrFI | CCNGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| BmsI | GCATC | 3 cut(s) | 957, 1766, 2290 |
| BpiI | GAAGAC | 5 cut(s) | 1418, 1535, 1576, 2066, 2139 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 608, 640 |
| BpmI | CTGGAG | 2 cut(s) | 377, 2199 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2271 |
| Bpu14I | TTCGAA | 1 cut(s) | 109 |
| BpuEI | CTTGAG | 6 cut(s) | 450, 631, 766, 1457, 2759, 2777 |
| BsaBI | GATNNNNATC | 4 cut(s) | 143, 995, 2379, 2556 |
| BsaI | GGTCTC | 3 cut(s) | 60, 803, 1860 |
| BsaJI | CCNNGG | 4 cut(s) | 210, 610, 1170, 2843 |
| BsaWI | WCCGGW | 2 cut(s) | 893, 2488 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1159, 1189, 2227, 2257 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 400, 977, 1481 |
| Bse1I | ACTGG | 2 cut(s) | 971, 1000 |
| Bse3DI | GCAATG | 4 cut(s) | 348, 563, 1193, 2436 |
| Bse8I | GATNNNNATC | 4 cut(s) | 143, 995, 2379, 2556 |
| BseAI | TCCGGA | 1 cut(s) | 2488 |
| BseBI | CCWGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| BseDI | CCNNGG | 4 cut(s) | 210, 610, 1170, 2843 |
| BseGI | GGATG | 6 cut(s) | 496, 972, 1020, 1946, 2440, 2713 |
| BseJI | GATNNNNATC | 4 cut(s) | 143, 995, 2379, 2556 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 400, 977, 1481 |
| BseMI | GCAATG | 4 cut(s) | 348, 563, 1193, 2436 |
| BseMII | CTCAG | 4 cut(s) | 587, 644, 1409, 2285 |
| BseNI | ACTGG | 2 cut(s) | 971, 1000 |
| BseRI | GAGGAG | 2 cut(s) | 473, 1134 |
| BseXI | GCAGC | 3 cut(s) | 2513, 2662, 2773 |
| BsgI | GTGCAG | 1 cut(s) | 1854 |
| BshFI | GGCC | 8 cut(s) | 209, 347, 368, 515, 1053, 2269, 2787, 2829 |
| BshNI | GGYRCC | 1 cut(s) | 861 |
| BsiHKAI | GWGCWC | 4 cut(s) | 9, 1426, 1463, 2478 |
| BsiSI | CCGG | 2 cut(s) | 894, 2489 |
| BslFI | GGGAC | 1 cut(s) | 592 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 400, 977, 1481 |
| BsmAI | GTCTC | 7 cut(s) | 60, 468, 803, 1338, 1358, 1860, 2247 |
| BsmFI | GGGAC | 1 cut(s) | 592 |
| BsmI | GAATGC | 1 cut(s) | 961 |
| BsnI | GGCC | 8 cut(s) | 209, 347, 368, 515, 1053, 2269, 2787, 2829 |
| Bso31I | GGTCTC | 3 cut(s) | 60, 803, 1860 |
| Bsp119I | TTCGAA | 1 cut(s) | 109 |
| Bsp1286I | GDGCHC | 5 cut(s) | 9, 136, 1426, 1463, 2478 |
| Bsp13I | TCCGGA | 1 cut(s) | 2488 |
| Bsp1407I | TGTACA | 2 cut(s) | 1017, 1839 |
| Bsp143I | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| Bsp19I | CCATGG | 1 cut(s) | 1170 |
| BspACI | CCGC | 2 cut(s) | 430, 1739 |
| BspANI | GGCC | 8 cut(s) | 209, 347, 368, 515, 1053, 2269, 2787, 2829 |
| BspCNI | CTCAG | 4 cut(s) | 586, 643, 1410, 2284 |
| BspEI | TCCGGA | 1 cut(s) | 2488 |
| BspLI | GGNNCC | 2 cut(s) | 863, 1176 |
| BspMI | ACCTGC | 1 cut(s) | 2179 |
| BspPI | GGATC | 4 cut(s) | 53, 1133, 2375, 2565 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 109 |
| BspT107I | GGYRCC | 1 cut(s) | 861 |
| BspTNI | GGTCTC | 3 cut(s) | 60, 803, 1860 |
| BsrBI | CCGCTC | 1 cut(s) | 430 |
| BsrDI | GCAATG | 4 cut(s) | 348, 563, 1193, 2436 |
| BsrGI | TGTACA | 2 cut(s) | 1017, 1839 |
| BsrI | ACTGG | 2 cut(s) | 971, 1000 |
| BssECI | CCNNGG | 4 cut(s) | 210, 610, 1170, 2843 |
| BssMI | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| BssNAI | GTATAC | 1 cut(s) | 1039 |
| BssT1I | CCWWGG | 1 cut(s) | 1170 |
| Bst1107I | GTATAC | 1 cut(s) | 1039 |
| Bst2UI | CCWGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| Bst4CI | ACNGT | 5 cut(s) | 285, 487, 936, 2029, 2653 |
| Bst6I | CTCTTC | 6 cut(s) | 14, 235, 682, 688, 718, 801 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2287 |
| BstAUI | TGTACA | 2 cut(s) | 1017, 1839 |
| BstBI | TTCGAA | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 2 cut(s) | 513, 1781 |
| BstDEI | CTNAG | 6 cut(s) | 573, 630, 1055, 1070, 1418, 2271 |
| BstDSI | CCRYGG | 2 cut(s) | 610, 1170 |
| BstEII | GGTNACC | 1 cut(s) | 1165 |
| BstF5I | GGATG | 6 cut(s) | 496, 972, 1020, 1946, 2440, 2713 |
| BstKTI | GATC | 9 cut(s) | 61, 855, 1141, 1354, 1642, 1969, 2185, 2383, 2560 |
| BstMAI | GTCTC | 7 cut(s) | 60, 468, 803, 1338, 1358, 1860, 2247 |
| BstMBI | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 782, 830, 1273, 2287, 2369, 2636, 2846 |
| BstNI | CCWGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| BstNSI | RCATGY | 3 cut(s) | 191, 1569, 1783 |
| BstPI | GGTNACC | 1 cut(s) | 1165 |
| BstSCI | CCNGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| BstSFI | CTRYAG | 2 cut(s) | 877, 2020 |
| BstV1I | GCAGC | 3 cut(s) | 2513, 2662, 2773 |
| BstV2I | GAAGAC | 5 cut(s) | 1418, 1535, 1576, 2066, 2139 |
| BstX2I | RGATCY | 2 cut(s) | 58, 1138 |
| BstYI | RGATCY | 2 cut(s) | 58, 1138 |
| BstZ17I | GTATAC | 1 cut(s) | 1039 |
| BsuRI | GGCC | 8 cut(s) | 209, 347, 368, 515, 1053, 2269, 2787, 2829 |
| BtgI | CCRYGG | 2 cut(s) | 610, 1170 |
| BtsCI | GGATG | 6 cut(s) | 496, 972, 1020, 1946, 2440, 2713 |
| BtsI | GCAGTG | 1 cut(s) | 1842 |
| BtsIMutI | CAGTG | 3 cut(s) | 801, 835, 1842 |
| BveI | ACCTGC | 1 cut(s) | 2179 |
| Cac8I | GCNNGC | 2 cut(s) | 513, 1781 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1823 |
| CsiI | ACCWGGT | 1 cut(s) | 2602 |
| DdeI | CTNAG | 6 cut(s) | 573, 630, 1055, 1070, 1418, 2271 |
| DpnI | GATC | 9 cut(s) | 60, 854, 1140, 1353, 1641, 1968, 2184, 2382, 2559 |
| DpnII | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| DraI | TTTAAA | 2 cut(s) | 1281, 1792 |
| DraIII | CACNNNGTG | 1 cut(s) | 1484 |
| EaeI | YGGCCR | 1 cut(s) | 345 |
| Eam1104I | CTCTTC | 6 cut(s) | 14, 235, 682, 688, 718, 801 |
| EarI | CTCTTC | 6 cut(s) | 14, 235, 682, 688, 718, 801 |
| Ecl136II | GAGCTC | 3 cut(s) | 7, 1424, 2476 |
| Eco130I | CCWWGG | 1 cut(s) | 1170 |
| Eco147I | AGGCCT | 3 cut(s) | 209, 515, 2269 |
| Eco24I | GRGCYC | 4 cut(s) | 9, 136, 1426, 2478 |
| Eco31I | GGTCTC | 3 cut(s) | 60, 803, 1860 |
| Eco53kI | GAGCTC | 3 cut(s) | 7, 1424, 2476 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 825, 1581 |
| Eco91I | GGTNACC | 1 cut(s) | 1165 |
| EcoICRI | GAGCTC | 3 cut(s) | 7, 1424, 2476 |
| EcoO65I | GGTNACC | 1 cut(s) | 1165 |
| EcoRII | CCWGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| EcoT14I | CCWWGG | 1 cut(s) | 1170 |
| EcoT22I | ATGCAT | 1 cut(s) | 1781 |
| EcoT38I | GRGCYC | 4 cut(s) | 9, 136, 1426, 2478 |
| ErhI | CCWWGG | 1 cut(s) | 1170 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2739, 2771 |
| FaqI | GGGAC | 1 cut(s) | 592 |
| FauNDI | CATATG | 5 cut(s) | 888, 1200, 1263, 1888, 1926 |
| FbaI | TGATCA | 1 cut(s) | 2182 |
| FblI | GTMKAC | 3 cut(s) | 741, 1038, 2589 |
| Fnu4HI | GCNGC | 3 cut(s) | 2502, 2676, 2762 |
| FokI | GGATG | 6 cut(s) | 503, 979, 1027, 1953, 2447, 2720 |
| FriOI | GRGCYC | 4 cut(s) | 9, 136, 1426, 2478 |
| Fsp4HI | GCNGC | 3 cut(s) | 2502, 2676, 2762 |
| FspBI | CTAG | 3 cut(s) | 1860, 2249, 2640 |
| GluI | GCNGC | 3 cut(s) | 2502, 2676, 2762 |
| GsuI | CTGGAG | 2 cut(s) | 377, 2199 |
| HaeIII | GGCC | 8 cut(s) | 209, 347, 368, 515, 1053, 2269, 2787, 2829 |
| HapII | CCGG | 2 cut(s) | 894, 2489 |
| HincII | GTYRAC | 1 cut(s) | 2194 |
| HindII | GTYRAC | 1 cut(s) | 2194 |
| HindIII | AAGCTT | 3 cut(s) | 580, 1982, 2045 |
| HpaI | GTTAAC | 1 cut(s) | 2194 |
| HpaII | CCGG | 2 cut(s) | 894, 2489 |
| Hpy166II | GTNNAC | 9 cut(s) | 30, 665, 742, 848, 1039, 1716, 1840, 2194, 2590 |
| Hpy8I | GTNNAC | 9 cut(s) | 30, 665, 742, 848, 1039, 1716, 1840, 2194, 2590 |
| Hpy99I | CGWCG | 1 cut(s) | 282 |
| HpyCH4III | ACNGT | 5 cut(s) | 285, 487, 936, 2029, 2653 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 782, 830, 1273, 2287, 2369, 2636, 2846 |
| HpyF3I | CTNAG | 6 cut(s) | 573, 630, 1055, 1070, 1418, 2271 |
| Kpn2I | TCCGGA | 1 cut(s) | 2488 |
| KpnI | GGTACC | 1 cut(s) | 865 |
| Ksp22I | TGATCA | 1 cut(s) | 2182 |
| KspAI | GTTAAC | 1 cut(s) | 2194 |
| Kzo9I | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| LmnI | GCTCC | 6 cut(s) | 4, 152, 427, 1180, 2473, 2845 |
| Lsp1109I | GCAGC | 3 cut(s) | 2513, 2662, 2773 |
| LweI | GCATC | 3 cut(s) | 957, 1766, 2290 |
| MabI | ACCWGGT | 1 cut(s) | 2602 |
| MaeI | CTAG | 3 cut(s) | 1860, 2249, 2640 |
| MalI | GATC | 9 cut(s) | 60, 854, 1140, 1353, 1641, 1968, 2184, 2382, 2559 |
| MbiI | CCGCTC | 1 cut(s) | 430 |
| MboI | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| MfeI | CAATTG | 1 cut(s) | 2505 |
| MflI | RGATCY | 2 cut(s) | 58, 1138 |
| MhlI | GDGCHC | 5 cut(s) | 9, 136, 1426, 1463, 2478 |
| MlsI | TGGCCA | 1 cut(s) | 347 |
| MluNI | TGGCCA | 1 cut(s) | 347 |
| MmeI | TCCRAC | 3 cut(s) | 522, 735, 2669 |
| Mox20I | TGGCCA | 1 cut(s) | 347 |
| Mph1103I | ATGCAT | 1 cut(s) | 1781 |
| MroI | TCCGGA | 1 cut(s) | 2488 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MscI | TGGCCA | 1 cut(s) | 347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 1485 |
| Msp20I | TGGCCA | 1 cut(s) | 347 |
| MspA1I | CMGCKG | 1 cut(s) | 1702 |
| MspI | CCGG | 2 cut(s) | 894, 2489 |
| MspR9I | CCNGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| MunI | CAATTG | 1 cut(s) | 2505 |
| Mva1269I | GAATGC | 1 cut(s) | 961 |
| MvaI | CCWGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 782, 830, 1273, 2287, 2369, 2636, 2846 |
| NcoI | CCATGG | 1 cut(s) | 1170 |
| NdeI | CATATG | 5 cut(s) | 888, 1200, 1263, 1888, 1926 |
| NdeII | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| NlaIV | GGNNCC | 2 cut(s) | 863, 1176 |
| NmuCI | GTSAC | 6 cut(s) | 445, 896, 1058, 1501, 1904, 2029 |
| NsiI | ATGCAT | 1 cut(s) | 1781 |
| NspI | RCATGY | 3 cut(s) | 191, 1569, 1783 |
| NspV | TTCGAA | 1 cut(s) | 109 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PaeI | GCATGC | 1 cut(s) | 1783 |
| PceI | AGGCCT | 3 cut(s) | 209, 515, 2269 |
| PciI | ACATGT | 1 cut(s) | 187 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 961 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 3 cut(s) | 106, 161, 1110 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 400 |
| PfoI | TCCNGGA | 1 cut(s) | 61 |
| PkrI | GCNGC | 3 cut(s) | 2503, 2677, 2763 |
| PscI | ACATGT | 1 cut(s) | 187 |
| PsiI | TTATAA | 1 cut(s) | 2052 |
| Psp124BI | GAGCTC | 3 cut(s) | 9, 1426, 2478 |
| Psp6I | CCWGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| PspEI | GGTNACC | 1 cut(s) | 1165 |
| PspGI | CCWGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| PspN4I | GGNNCC | 2 cut(s) | 863, 1176 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1823 |
| PsuI | RGATCY | 2 cut(s) | 58, 1138 |
| PvuII | CAGCTG | 1 cut(s) | 1702 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 1485 |
| SacI | GAGCTC | 3 cut(s) | 9, 1426, 2478 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| SatI | GCNGC | 3 cut(s) | 2502, 2676, 2762 |
| Sau3AI | GATC | 9 cut(s) | 58, 852, 1138, 1351, 1639, 1966, 2182, 2380, 2557 |
| ScaI | AGTACT | 2 cut(s) | 1808, 1882 |
| ScrFI | CCNGG | 6 cut(s) | 63, 211, 866, 1050, 1711, 2604 |
| SduI | GDGCHC | 5 cut(s) | 9, 136, 1426, 1463, 2478 |
| SexAI | ACCWGGT | 1 cut(s) | 2602 |
| SfaNI | GCATC | 3 cut(s) | 957, 1766, 2290 |
| SfcI | CTRYAG | 2 cut(s) | 877, 2020 |
| SfuI | TTCGAA | 1 cut(s) | 109 |
| SmiI | ATTTAAAT | 1 cut(s) | 1281 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 1485 |
| SmlI | CTYRAG | 6 cut(s) | 465, 646, 745, 1436, 2738, 2756 |
| SmoI | CTYRAG | 6 cut(s) | 465, 646, 745, 1436, 2738, 2756 |
| SphI | GCATGC | 1 cut(s) | 1783 |
| SseBI | AGGCCT | 3 cut(s) | 209, 515, 2269 |
| SsiI | CCGC | 2 cut(s) | 430, 1739 |
| SspI | AATATT | 2 cut(s) | 1496, 2697 |
| SspMI | CTAG | 3 cut(s) | 1860, 2249, 2640 |
| SstI | GAGCTC | 3 cut(s) | 9, 1426, 2478 |
| StuI | AGGCCT | 3 cut(s) | 209, 515, 2269 |
| StyD4I | CCNGG | 6 cut(s) | 61, 209, 864, 1048, 1709, 2602 |
| StyI | CCWWGG | 1 cut(s) | 1170 |
| SwaI | ATTTAAAT | 1 cut(s) | 1281 |
| TaaI | ACNGT | 5 cut(s) | 285, 487, 936, 2029, 2653 |
| TaqI | TCGA | 6 cut(s) | 109, 200, 288, 1642, 2083, 2394 |
| TatI | WGTACW | 6 cut(s) | 27, 1017, 1806, 1839, 1880, 2535 |
| TfiI | GAWTC | 3 cut(s) | 106, 161, 1110 |
| TscAI | CASTG | 3 cut(s) | 808, 835, 1842 |
| TseFI | GTSAC | 6 cut(s) | 445, 896, 1058, 1501, 1904, 2029 |
| TseI | GCWGC | 3 cut(s) | 2501, 2675, 2761 |
| Tsp45I | GTSAC | 6 cut(s) | 445, 896, 1058, 1501, 1904, 2029 |
| TspGWI | ACGGA | 3 cut(s) | 165, 440, 1162 |
| TspRI | CASTG | 3 cut(s) | 808, 835, 1842 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 400 |
| XapI | RAATTY | 4 cut(s) | 1282, 1315, 1787, 2442 |
| XceI | RCATGY | 3 cut(s) | 191, 1569, 1783 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1007, 1765, 1893 |
| XmiI | GTMKAC | 3 cut(s) | 741, 1038, 2589 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 3 cut(s) | 1860, 2249, 2640 |
| ZrmI | AGTACT | 2 cut(s) | 1808, 1882 |
| Zsp2I | ATGCAT | 1 cut(s) | 1781 |