MD09G1044700.v1.1

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
2891707 .. 2896768
5062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1044700.v1.1.491

Sequence Viewer

Length: 3723 bp
ATGCAAGGAGCACACAGTATCTTCCGGCTTATATGCCACAGCTGCAGAGAGAAGTACAGAGGACTGATACTGAGAGAAGGAGCAATGCCCGGACTGCTTCAGCTGAGCATGGATGGGACGTGGACGGCTAAGGCCACGGCACAGGAGTTGCTGTTTCTCTTGAAAGACTGTTCCAATTACGGTTCGAGAAACAAGCAGTCGAGGAATAAGGATATAGAGCAGATTATGTTAGAGGAATCGAGCAGTATTGAGAAGCTACCTCTAGCTGAGAGACTGATGAAAGATGCTAAAGCTCTGGGTCTGATTCAAGGAGCTGTTTCAGATGAAATATTTCCCAGAATCTCTTATGAAGAAACTTCAAAAGGCGCATGGGATACTTTGCAACAAGAGTATCATGGTGATAAACAGGTTAGAAATGTTAAATTGCAAGGTCTTCGTAGGGAATTTGAATATACAAGAATGCGAGATGATGAATCACTTTCTGTCTATCTTACAAAATTATTTGATCTGATAAATCAAATGCGGAGTTATGGAGAGGAGTTATCTCGAGAGAGGATTGTTCAAAAGTTATTGATTAGTTTGCCATCAGCTTATGATTCTATATGCTCTGTTATTGAACATTTGAAGGATTTGGATGTGATTGAGGTACAAGAAGTTGTAGCTTCCTTGAAGAGTTTTGAGCTACGTCTAGATAGACATTCTGAGCACAAAACTGAGAAAGCATTTGCTAGTCTCAATGTGAATCCTAAACCAGCCAAATTCACTGGAAATCAAAGTGCAAGGTACCATAAGAATTGGAAAGAAAAAGGGAAGAGGTGGGATAACAAACCCACTGATGGTGCTAGAAATCCTTGTAAACATTGTGATAAGCTACATTTTGGTGAGTGCCGATTCAAGGGTAAACCAAAGTGTTATAACTGTGATAAATTTGGTCATATTGCAAGGGATTGTAATAGCAAGAAACCAGTGCAACAGGTCAATTATGCAAATAAGGTAGAATCTACACCCACCATGTTTTATGCTAGTAATCAAACTAATACTAGTGTAAAGGACTGTGATGATGTATGGTATGTAGATAGTGGGTGTAGTAATCATATGACTGGAAGGGAGGATTTACTTGTGGATATTGATAAGAATGTAACTGCAAAAGTTGAAATGGGTACTGGACAGCTTGTTGATGTAACTGGTAAAGGGAGTCTTGTAGTTGAAACTAAACTAGGCAAGAGATATATCAAGGAGGTTATGCTTGTGCCTGGACTGAAAGAAAATTTGCTCAGTGTGGGTCAAATGATGGAGCACGGTTATTATTTGGTGTTTGGAGGTCACAAGGTGGAAATCTATGATGATAGCTCATATTCCAACATGGTTGCTAAAGTTCCAATGAAGGGAAATCGAAGTTTTCCAATGAAATTACAGACTGGAATACATATTGCTTTCAAGGCAAATGTATGTGCTTCTACTACTATGTGGCATAAAAGGTTGGGACACCTAAACATGAGCAGTTTGAAATTGATGCAGGAACAAGAAATGGTAGTAGGATTGCCAGAAATCAAAGTAGTTAAAGGAGTATGTGAAGGTTGTGTTCTCGGTAAACAATGTAGAGAAGCATTTCCAAGGGAAGCTACTACTAGAGCATCAATTCCTCTAGAGCTTGTGCATAGTGACATTTGTGGCCCGATGCAGACAACTACAAAAGCTGGAAATAGATATTTTCTCACTTTCATAGATTACTGCACCAGGATGTGTTGGATTTATTTTTTGAGGCATAAATCTGAAGTTCTTAGTGTGTTTAAAAAGTTCAAAGCCACTGTGGAGTTGCAGAGTGGTTATAATCTAAAGCAACTTAGGAGTGGTCGAGGAGGTGAATACACTTCAATGGAGTTTAACAAGTTTGTTGAAGATGTAGGCATGGAAAGACAACTTACCACTTCATACACACCACAGCAAAACGGTGTGGCAGAGCGAAAGAACAGAACCATTGTGGAAATGGCTAAGTGTCTCATGTTGGAGAAGGATATCCCACTTGAATTTTGGGCTGAGGCAGTTAATACCTCAGTGTATATCTTGAATAGATGTCCAACCAAAGCCTTACATAGGAAGACACCTTTCGAAGCTTACAGTGGAAGAAAACCAGGAATTAAGCATCTAAAGGTGTTTGGTTCTTTGTGTTATGCTCATGTGCCAAGTCAACAGAAACAAAAACTCGATTTGGCAAGCAAGAGGTGTATTTTCTTGGGTTATGGTAGTTGTGAGAAGGGATATAAACTCTATAACATTGAATCTGGAAAGGTGATTATTTCCAGAGATGTTGTGTTTAATGAAGAAGCATGTTGGGACTGGAATGCACATAAGGAAATAAGGGAGAGTATCCAGATTATTAAGATGTCTGAAGGAGAACAAAACTGTGAAGGAGGTGATTGTGATCCTGAAACCCAATGTGAAGTCAGTGAAGAGAATGTTGGGCAAAACTTGGTTACTGAGTTCTCTGATCAAGAAAGAATGACAGGTCAACAGGATTTTGATCACACTCCTCTCAAGTACAGAAACATTGCAGAAATATATGAGAAGTGTAATCTGTGCATTATAGAACCCGAATGTTTTGAAGAAGCTGCCAAGGATGAATCATGGCAGAAGGCTATGGAAGATGAAATCTCTATGATTGAGAAGAATCATACTTGGGATCTTGTTGATAGACCATTTGATAAACCAATCATTGGAGTCAAATGGGTTTATAAAACAAAACTAAATCTGGATGGCTCAGTGCAGAAAAACAAAGCACGGTTAGTTGCAAAAGGTTACTCTCAGAAACCTGGAATCGATTTTAATGAAACTTTTGCACCAGTGGCAAGACTTGATACTGTGAGAACTTTGGTGGCCCTTGCTGCACAGAAAGGATGGAAATTATTTCAGTTAGATATAAAGTCTGCATTTCTAAATAGAGTGTTGAATGAAGAGGTGTATGTGGATCAACCATCTGGTTTTGTTATACAGGGCAAGGAAGACAAAGTGTACAGGCTCAGGAAAGCTTTATATGGTTTGAAACAAGCTCCAAGAGCTTGGTATGAAGAAATAAATTCCTATTTTGCAAAGGCTGGATTCCACAGAAGTCCGAGTGAAGCTACTCTTTATATCAAGACATCTCACAGTGGCATTCTCATTGTGTCACTATATGTAGATGATATTATCTACACAGGAAGTTCAAAGGAGATGATAGCTGAGTTCAAAGGTGAGATGATGAGACAATATGAGATGACTAATCTAGGATTACTTCATCATTTCCTTGGTCTTGGGGTATTGCAGACAGATAATTACATCTTCTTGCATCAAAAGAAATATGCAAAGACTTTGCTTGAGAAATTTAGACTTAGGGATTGCAAGCCGGTTGCAACACCATTAGCTATGAATGAAAAACTTACAAAAGTAGATGGAAGTGATCTGGCAGATGAAACTCTATATAGACAAATGGTGGGAAGTTTGCTATATTTGACAGCAACAAGGCCAGATATTATGTTTGCAGCAAGCTTATTGGCTAGGTTTATGCACAATCCTACTAAGAAGCATATGGGGACAGCTAAGAGAGTTCTGAGATACATACAAGGCACTGTGAACTATGGAGTTATTATGCAGGACACTGATGTTGGGGGAGAAAAAGTTGATGGGATGAGTACAACGATATTGAGGCTGGTGGAGGAGATGCTATCAAAGATCAGCAGTGGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1241

Amino Acids

141.48

Weight (kDa)

8.63

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 86 - 231 1.4e-30 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 356 - 435 4.8e-23 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 483 - 532 3e-13 GAG-pre-integrase domain
rve PF00665 547 - 647 3.5e-10 Integrase core domain
SH3_retrovirus PF25597 721 - 784 5.6e-25 Retroviral polymerase SH3-like domain
RVT_2 PF07727 890 - 1132 4.6e-81 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 915, 1830, 2733
Acc65I GGTACC 1 cut(s) 783
AccB1I GGYRCC 1 cut(s) 783
AccB7I CCANNNNNTGG 1 cut(s) 2714
AciI CCGC 1 cut(s) 523
AclWI GGATC 3 cut(s) 2417, 2688, 2973
AcsI RAATTY 7 cut(s) 443, 758, 926, 1267, 2027, 3073, 3356
AcuI CTGAAG 3 cut(s) 83, 1794, 2409
AdeI CACNNNGTG 1 cut(s) 1330
AfaI GTAC 7 cut(s) 56, 648, 785, 1162, 2540, 3011, 3667
AfiI CCNNNNNNNGG 5 cut(s) 836, 895, 1385, 2094, 2714
AhlI ACTAGT 1 cut(s) 1040
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 4 cut(s) 1252, 1736, 2131, 2809
AjuI GAANNNNNNNTTGG 2 cut(s) 2442, 2474
Alw21I GWGCWC 3 cut(s) 13, 708, 1299
Alw26I GTCTC 4 cut(s) 265, 737, 2003, 3232
AlwI GGATC 3 cut(s) 2417, 2688, 2973
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 4 cut(s) 132, 1672, 2874, 3497
ApeKI GCWGC 4 cut(s) 42, 2609, 2882, 3515
ApoI RAATTY 7 cut(s) 443, 758, 926, 1267, 2027, 3073, 3356
Asp700I GAANNNNTTC 2 cut(s) 330, 1608
Asp718I GGTACC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 1673, 2875
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 410, 893, 1874, 2302, 2426, 3239
AsuII TTCGAA 1 cut(s) 2109
AvaI CYCGRG 1 cut(s) 546
BaeI ACNNNNGTAYC 2 cut(s) 374, 407
BanI GGYRCC 1 cut(s) 783
BbsI GAAGAC 3 cut(s) 425, 2105, 3006
Bbv12I GWGCWC 3 cut(s) 13, 708, 1299
BbvCI CCTCAGC 1 cut(s) 2037
BbvI GCAGC 4 cut(s) 29, 2596, 2869, 3527
BccI CCATC 9 cut(s) 107, 592, 830, 1285, 2747, 2889, 2980, 3419, 3650
BceAI ACGGC 2 cut(s) 141, 153
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 4 cut(s) 1254, 1738, 2133, 2811
BciVI GTATCC 2 cut(s) 367, 2378
BclI TGATCA 2 cut(s) 2488, 2521
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 4 cut(s) 265, 737, 2003, 3232
BcuI ACTAGT 1 cut(s) 1040
BfmI CTRYAG 1 cut(s) 43
BfuI GTATCC 2 cut(s) 367, 2378
BisI GCNGC 4 cut(s) 43, 2610, 2883, 3516
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 4 cut(s) 44, 2611, 2884, 3517
Bme1390I CCNGG 5 cut(s) 90, 1254, 1738, 2133, 2811
BmeT110I CYCGRG 1 cut(s) 546
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 1673, 2875
BmiI GGNNCC 1 cut(s) 785
BmrFI CCNGG 5 cut(s) 90, 1254, 1738, 2133, 2811
BmsI GCATC 7 cut(s) 274, 1503, 1643, 1668, 2152, 3331, 3684
BpiI GAAGAC 3 cut(s) 425, 2105, 3006
Bpu10I CCTNAGC 3 cut(s) 129, 2037, 3017
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 2109
BpuEI CTTGAG 2 cut(s) 2519, 3371
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 2817
BsaBI GATNNNNATC 2 cut(s) 2421, 2520
BsaJI CCNNGG 4 cut(s) 135, 1613, 2613, 3280
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 3636, 3666
Bsc4I CCNNNNNNNGG 5 cut(s) 836, 895, 1385, 2094, 2714
Bse118I RCCGGY 1 cut(s) 3379
Bse1I ACTGG 8 cut(s) 769, 965, 1105, 1168, 1189, 1423, 2342, 2840
Bse3DI GCAATG 2 cut(s) 90, 2547
Bse8I GATNNNNATC 2 cut(s) 2421, 2520
BseBI CCWGG 4 cut(s) 1254, 1738, 2133, 2811
BseCI ATCGAT 1 cut(s) 2817
BseDI CCNNGG 4 cut(s) 135, 1613, 2613, 3280
BseGI GGATG 7 cut(s) 118, 640, 1746, 2623, 2758, 2900, 3666
BseJI GATNNNNATC 2 cut(s) 2421, 2520
BseLI CCNNNNNNNGG 5 cut(s) 836, 895, 1385, 2094, 2714
BseMI GCAATG 2 cut(s) 90, 2547
BseNI ACTGG 8 cut(s) 769, 965, 1105, 1168, 1189, 1423, 2342, 2840
BseRI GAGGAG 4 cut(s) 551, 1872, 2520, 3704
BseXI GCAGC 4 cut(s) 29, 2596, 2869, 3527
BsgI GTGCAG 3 cut(s) 1717, 2783, 2868
BshFI GGCC 4 cut(s) 134, 1674, 2876, 3499
BshNI GGYRCC 1 cut(s) 783
BshVI ATCGAT 1 cut(s) 2817
BsiHKAI GWGCWC 3 cut(s) 13, 708, 1299
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 3 cut(s) 25, 90, 3380
BslFI GGGAC 4 cut(s) 130, 1497, 2348, 3580
BslI CCNNNNNNNGG 5 cut(s) 836, 895, 1385, 2094, 2714
BsmAI GTCTC 4 cut(s) 265, 737, 2003, 3232
BsmFI GGGAC 4 cut(s) 130, 1497, 2348, 3580
BsmI GAATGC 3 cut(s) 465, 2347, 3150
BsnI GGCC 4 cut(s) 134, 1674, 2876, 3499
BsoBI CYCGRG 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 2109
Bsp1286I GDGCHC 3 cut(s) 13, 708, 1299
Bsp1407I TGTACA 1 cut(s) 3009
Bsp143I GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 1 cut(s) 523
BspANI GGCC 4 cut(s) 134, 1674, 2876, 3499
BspDI ATCGAT 1 cut(s) 2817
BspLI GGNNCC 1 cut(s) 785
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 3 cut(s) 2417, 2688, 2973
BspT104I TTCGAA 1 cut(s) 2109
BspT107I GGYRCC 1 cut(s) 783
BsrDI GCAATG 2 cut(s) 90, 2547
BsrFI RCCGGY 1 cut(s) 3379
BsrGI TGTACA 1 cut(s) 3009
BsrI ACTGG 8 cut(s) 769, 965, 1105, 1168, 1189, 1423, 2342, 2840
BssAI RCCGGY 1 cut(s) 3379
BssECI CCNNGG 4 cut(s) 135, 1613, 2613, 3280
BssMI GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
BssT1I CCWWGG 3 cut(s) 1613, 2613, 3280
Bst2UI CCWGG 4 cut(s) 1254, 1738, 2133, 2811
Bst6I CTCTTC 4 cut(s) 665, 806, 2445, 2946
BstAUI TGTACA 1 cut(s) 3009
BstBI TTCGAA 1 cut(s) 2109
BstC8I GCNNGC 3 cut(s) 2215, 3377, 3520
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 2092
BstF5I GGATG 7 cut(s) 118, 640, 1746, 2623, 2758, 2900, 3666
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 8 cut(s) 508, 2425, 2491, 2524, 2683, 2968, 3436, 3708
BstMAI GTCTC 4 cut(s) 265, 737, 2003, 3232
BstMBI GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
BstMWI GCNNNNNNNGC 6 cut(s) 42, 94, 1439, 2843, 2882, 3053
BstNI CCWGG 4 cut(s) 1254, 1738, 2133, 2811
BstNSI RCATGY 1 cut(s) 2331
BstSCI CCNGG 5 cut(s) 88, 1252, 1736, 2131, 2809
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 29, 2596, 2869, 3527
BstV2I GAAGAC 3 cut(s) 425, 2105, 3006
BstX2I RGATCY 1 cut(s) 2680
BstXI CCANNNNNNTGG 1 cut(s) 3057
BstYI RGATCY 1 cut(s) 2680
Bsu15I ATCGAT 1 cut(s) 2817
BsuI GTATCC 2 cut(s) 367, 2378
BsuRI GGCC 4 cut(s) 134, 1674, 2876, 3499
BsuTUI ATCGAT 1 cut(s) 2817
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 7 cut(s) 118, 640, 1746, 2623, 2758, 2900, 3666
BtsI GCAGTG 1 cut(s) 3718
Cac8I GCNNGC 3 cut(s) 2215, 3377, 3520
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 3379
Cfr13I GGNCC 2 cut(s) 1673, 2875
ClaI ATCGAT 1 cut(s) 2817
Csp6I GTAC 7 cut(s) 55, 647, 784, 1161, 2539, 3010, 3666
CviQI GTAC 7 cut(s) 55, 647, 784, 1161, 2539, 3010, 3666
DpnI GATC 8 cut(s) 507, 2424, 2490, 2523, 2682, 2967, 3435, 3707
DpnII GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
DraI TTTAAA 1 cut(s) 1792
DraIII CACNNNGTG 1 cut(s) 1330
Eam1104I CTCTTC 4 cut(s) 665, 806, 2445, 2946
EarI CTCTTC 4 cut(s) 665, 806, 2445, 2946
Eco130I CCWWGG 3 cut(s) 1613, 2613, 3280
Eco32I GATATC 1 cut(s) 2017
Eco57I CTGAAG 3 cut(s) 83, 1794, 2409
Eco88I CYCGRG 1 cut(s) 546
EcoNI CCTNNNNNAGG 1 cut(s) 2092
EcoRII CCWGG 4 cut(s) 1252, 1736, 2131, 2809
EcoRV GATATC 1 cut(s) 2017
EcoT14I CCWWGG 3 cut(s) 1613, 2613, 3280
ErhI CCWWGG 3 cut(s) 1613, 2613, 3280
FalI AAGNNNNNCTT 4 cut(s) 1182, 1214, 3108, 3140
FaqI GGGAC 4 cut(s) 130, 1497, 2348, 3580
FauNDI CATATG 2 cut(s) 1095, 3561
FbaI TGATCA 2 cut(s) 2488, 2521
Fnu4HI GCNGC 4 cut(s) 43, 2610, 2883, 3516
FokI GGATG 7 cut(s) 125, 647, 1753, 2630, 2765, 2907, 3673
Fsp4HI GCNGC 4 cut(s) 43, 2610, 2883, 3516
GlaI GCGC 1 cut(s) 367
GluI GCNGC 4 cut(s) 43, 2610, 2883, 3516
HaeIII GGCC 4 cut(s) 134, 1674, 2876, 3499
HapII CCGG 3 cut(s) 25, 90, 3380
HhaI GCGC 1 cut(s) 368
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 2 cut(s) 2189, 2510
HindII GTYRAC 2 cut(s) 2189, 2510
HindIII AAGCTT 3 cut(s) 2112, 3024, 3520
HpaII CCGG 3 cut(s) 25, 90, 3380
HphI GGTGA 6 cut(s) 410, 893, 1874, 2302, 2426, 3239
Hpy166II GTNNAC 9 cut(s) 123, 857, 902, 1592, 2189, 2510, 3010, 3607, 3716
Hpy8I GTNNAC 9 cut(s) 123, 857, 902, 1592, 2189, 2510, 3010, 3607, 3716
HpyCH4IV ACGT 2 cut(s) 119, 685
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 94, 1439, 2843, 2882, 3053
HpySE526I ACGT 2 cut(s) 119, 685
HspAI GCGC 1 cut(s) 366
KpnI GGTACC 1 cut(s) 787
Ksp22I TGATCA 2 cut(s) 2488, 2521
Kzo9I GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
LmnI GCTCC 5 cut(s) 8, 80, 311, 1294, 3052
Lsp1109I GCAGC 4 cut(s) 29, 2596, 2869, 3527
LweI GCATC 7 cut(s) 274, 1503, 1643, 1668, 2152, 3331, 3684
MaeII ACGT 2 cut(s) 119, 685
MaeIII GTNAC 7 cut(s) 1138, 1180, 1322, 1661, 2473, 2795, 3162
MalI GATC 8 cut(s) 507, 2424, 2490, 2523, 2682, 2967, 3435, 3707
MboI GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
MflI RGATCY 1 cut(s) 2680
MhlI GDGCHC 3 cut(s) 13, 708, 1299
MlyI GAGTC 2 cut(s) 1204, 2727
MmeI TCCRAC 4 cut(s) 1383, 1727, 1986, 2102
MroXI GAANNNNTTC 2 cut(s) 330, 1608
MseI TTAA 9 cut(s) 420, 1560, 1791, 1884, 2046, 2139, 2316, 2379, 2823
MslI CAYNNNNRTG 3 cut(s) 879, 1739, 1874
MspA1I CMGCKG 2 cut(s) 42, 103
MspI CCGG 3 cut(s) 25, 90, 3380
MspR9I CCNGG 5 cut(s) 90, 1254, 1738, 2133, 2811
Mva1269I GAATGC 3 cut(s) 465, 2347, 3150
MvaI CCWGG 4 cut(s) 1254, 1738, 2133, 2811
MwoI GCNNNNNNNGC 6 cut(s) 42, 94, 1439, 2843, 2882, 3053
NciI CCSGG 1 cut(s) 90
NdeI CATATG 2 cut(s) 1095, 3561
NdeII GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
NlaIV GGNNCC 1 cut(s) 785
NmuCI GTSAC 3 cut(s) 1322, 1661, 3162
NspI RCATGY 1 cut(s) 2331
NspV TTCGAA 1 cut(s) 2109
PaeR7I CTCGAG 1 cut(s) 546
PctI GAATGC 3 cut(s) 465, 2347, 3150
PdmI GAANNNNTTC 2 cut(s) 330, 1608
PflMI CCANNNNNTGG 1 cut(s) 2714
PkrI GCNGC 4 cut(s) 44, 2611, 2884, 3517
PleI GAGTC 2 cut(s) 1203, 2726
PpsI GAGTC 2 cut(s) 1203, 2726
PsiI TTATAA 3 cut(s) 915, 1830, 2733
Psp6I CCWGG 4 cut(s) 1252, 1736, 2131, 2809
PspGI CCWGG 4 cut(s) 1252, 1736, 2131, 2809
PspN4I GGNNCC 1 cut(s) 785
PspPI GGNCC 2 cut(s) 1673, 2875
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 2680
PvuII CAGCTG 2 cut(s) 42, 103
RsaI GTAC 7 cut(s) 56, 648, 785, 1162, 2540, 3011, 3667
RsaNI GTAC 7 cut(s) 55, 647, 784, 1161, 2539, 3010, 3666
RseI CAYNNNNRTG 3 cut(s) 879, 1739, 1874
SaqAI TTAA 9 cut(s) 420, 1560, 1791, 1884, 2046, 2139, 2316, 2379, 2823
SatI GCNGC 4 cut(s) 43, 2610, 2883, 3516
Sau3AI GATC 8 cut(s) 505, 2422, 2488, 2521, 2680, 2965, 3433, 3705
Sau96I GGNCC 2 cut(s) 1673, 2875
SchI GAGTC 2 cut(s) 1204, 2727
ScrFI CCNGG 5 cut(s) 90, 1254, 1738, 2133, 2811
SduI GDGCHC 3 cut(s) 13, 708, 1299
SfaNI GCATC 7 cut(s) 274, 1503, 1643, 1668, 2152, 3331, 3684
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 2109
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 3 cut(s) 879, 1739, 1874
SmlI CTYRAG 3 cut(s) 546, 2534, 3350
SmoI CTYRAG 3 cut(s) 546, 2534, 3350
SpeI ACTAGT 1 cut(s) 1040
SsiI CCGC 1 cut(s) 523
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 5 cut(s) 88, 1252, 1736, 2131, 2809
StyI CCWWGG 3 cut(s) 1613, 2613, 3280
TaiI ACGT 2 cut(s) 122, 688
TaqI TCGA 9 cut(s) 185, 200, 239, 547, 1393, 1855, 2109, 2205, 2817
TatI WGTACW 4 cut(s) 54, 2538, 3009, 3665
Tru1I TTAA 9 cut(s) 420, 1560, 1791, 1884, 2046, 2139, 2316, 2379, 2823
Tru9I TTAA 9 cut(s) 420, 1560, 1791, 1884, 2046, 2139, 2316, 2379, 2823
TseFI GTSAC 3 cut(s) 1322, 1661, 3162
TseI GCWGC 4 cut(s) 42, 2609, 2882, 3515
Tsp45I GTSAC 3 cut(s) 1322, 1661, 3162
Van91I CCANNNNNTGG 1 cut(s) 2714
XagI CCTNNNNNAGG 1 cut(s) 2092
XapI RAATTY 7 cut(s) 443, 758, 926, 1267, 2027, 3073, 3356
XbaI TCTAGA 2 cut(s) 688, 1645
XceI RCATGY 1 cut(s) 2331
XcmI CCANNNNNNNNNTGG 2 cut(s) 1984, 2028
XhoI CTCGAG 1 cut(s) 546
XmnI GAANNNNTTC 2 cut(s) 330, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.