Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1004 |
| AciI | CCGC | 3 cut(s) | 108, 790, 948 |
| AcoI | YGGCCR | 1 cut(s) | 1048 |
| AcsI | RAATTY | 2 cut(s) | 483, 506 |
| AcuI | CTGAAG | 1 cut(s) | 1035 |
| AfaI | GTAC | 2 cut(s) | 308, 1024 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 649 |
| AflIII | ACRYGT | 2 cut(s) | 826, 904 |
| AgsI | TTSAA | 3 cut(s) | 152, 182, 196 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 64 |
| AleI | CACNNNNGTG | 2 cut(s) | 777, 905 |
| AluBI | AGCT | 8 cut(s) | 28, 335, 340, 443, 466, 718, 835, 1095 |
| AluI | AGCT | 8 cut(s) | 28, 335, 340, 443, 466, 718, 835, 1095 |
| Alw21I | GWGCWC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| Alw26I | GTCTC | 3 cut(s) | 245, 263, 980 |
| Alw44I | GTGCAC | 1 cut(s) | 660 |
| AoxI | GGCC | 2 cut(s) | 174, 1048 |
| ApaLI | GTGCAC | 1 cut(s) | 660 |
| ApeKI | GCWGC | 2 cut(s) | 340, 463 |
| ApoI | RAATTY | 2 cut(s) | 483, 506 |
| AspS9I | GGNCC | 1 cut(s) | 174 |
| AsuHPI | GGTGA | 5 cut(s) | 220, 337, 461, 541, 794 |
| AsuII | TTCGAA | 1 cut(s) | 352 |
| BaeGI | GKGCMC | 1 cut(s) | 664 |
| BanII | GRGCYC | 2 cut(s) | 337, 720 |
| BbsI | GAAGAC | 1 cut(s) | 1023 |
| Bbv12I | GWGCWC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| BbvI | GCAGC | 2 cut(s) | 327, 475 |
| BccI | CCATC | 7 cut(s) | 41, 137, 377, 385, 697, 847, 856 |
| BceAI | ACGGC | 1 cut(s) | 1063 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 332, 366 |
| BclI | TGATCA | 1 cut(s) | 909 |
| BcoDI | GTCTC | 3 cut(s) | 245, 263, 980 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BfmI | CTRYAG | 1 cut(s) | 341 |
| BfuAI | ACCTGC | 1 cut(s) | 1004 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1056 |
| BisI | GCNGC | 3 cut(s) | 109, 341, 464 |
| BlpI | GCTNAGC | 1 cut(s) | 336 |
| BlsI | GCNGC | 3 cut(s) | 110, 342, 465 |
| BmcAI | AGTACT | 1 cut(s) | 1024 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 1 cut(s) | 174 |
| BmsI | GCATC | 3 cut(s) | 175, 486, 684 |
| BpiI | GAAGAC | 1 cut(s) | 1023 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 336 |
| Bpu14I | TTCGAA | 1 cut(s) | 352 |
| BsaAI | YACGTR | 1 cut(s) | 517 |
| BsaI | GGTCTC | 1 cut(s) | 980 |
| BsaJI | CCNNGG | 2 cut(s) | 310, 1054 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 378, 408 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 649 |
| Bse1I | ACTGG | 1 cut(s) | 597 |
| BseDI | CCNNGG | 2 cut(s) | 310, 1054 |
| BseGI | GGATG | 1 cut(s) | 814 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 649 |
| BseMII | CTCAG | 4 cut(s) | 150, 350, 771, 975 |
| BseNI | ACTGG | 1 cut(s) | 597 |
| BseSI | GKGCMC | 1 cut(s) | 664 |
| BseXI | GCAGC | 2 cut(s) | 327, 475 |
| BshFI | GGCC | 2 cut(s) | 176, 1050 |
| BsiHKAI | GWGCWC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 649 |
| BsmAI | GTCTC | 3 cut(s) | 245, 263, 980 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsmI | GAATGC | 2 cut(s) | 605, 644 |
| BsnI | GGCC | 2 cut(s) | 176, 1050 |
| Bso31I | GGTCTC | 1 cut(s) | 980 |
| Bsp119I | TTCGAA | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| Bsp143I | GATC | 3 cut(s) | 92, 568, 909 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 336 |
| BspACI | CCGC | 3 cut(s) | 108, 790, 948 |
| BspANI | GGCC | 2 cut(s) | 176, 1050 |
| BspCNI | CTCAG | 4 cut(s) | 151, 349, 770, 976 |
| BspMAI | CTGCAG | 1 cut(s) | 345 |
| BspMI | ACCTGC | 1 cut(s) | 1004 |
| BspT104I | TTCGAA | 1 cut(s) | 352 |
| BspTNI | GGTCTC | 1 cut(s) | 980 |
| BsrI | ACTGG | 1 cut(s) | 597 |
| BssECI | CCNNGG | 2 cut(s) | 310, 1054 |
| BssMI | GATC | 3 cut(s) | 92, 568, 909 |
| BssT1I | CCWWGG | 2 cut(s) | 310, 1054 |
| Bst4CI | ACNGT | 1 cut(s) | 1022 |
| Bst6I | CTCTTC | 3 cut(s) | 323, 349, 684 |
| BstBAI | YACGTR | 1 cut(s) | 517 |
| BstBI | TTCGAA | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 3 cut(s) | 30, 345, 588 |
| BstDEI | CTNAG | 5 cut(s) | 159, 336, 488, 757, 984 |
| BstF5I | GGATG | 1 cut(s) | 814 |
| BstKTI | GATC | 3 cut(s) | 95, 571, 912 |
| BstMAI | GTCTC | 3 cut(s) | 245, 263, 980 |
| BstMBI | GATC | 3 cut(s) | 92, 568, 909 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 609, 1056 |
| BstNSI | RCATGY | 2 cut(s) | 830, 908 |
| BstSFI | CTRYAG | 1 cut(s) | 341 |
| BstSLI | GKGCMC | 1 cut(s) | 664 |
| BstV1I | GCAGC | 2 cut(s) | 327, 475 |
| BstV2I | GAAGAC | 1 cut(s) | 1023 |
| BsuRI | GGCC | 2 cut(s) | 176, 1050 |
| BtsCI | GGATG | 1 cut(s) | 814 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 590, 912 |
| BveI | ACCTGC | 1 cut(s) | 1004 |
| Cac8I | GCNNGC | 3 cut(s) | 30, 345, 588 |
| Cfr13I | GGNCC | 1 cut(s) | 174 |
| CseI | GACGC | 1 cut(s) | 999 |
| Csp6I | GTAC | 2 cut(s) | 307, 1023 |
| CviAII | CATG | 6 cut(s) | 76, 446, 775, 827, 905, 979 |
| CviQI | GTAC | 2 cut(s) | 307, 1023 |
| DdeI | CTNAG | 5 cut(s) | 159, 336, 488, 757, 984 |
| DpnI | GATC | 3 cut(s) | 94, 570, 911 |
| DpnII | GATC | 3 cut(s) | 92, 568, 909 |
| DriI | GACNNNNNGTC | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 1048 |
| Eam1104I | CTCTTC | 3 cut(s) | 323, 349, 684 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 64 |
| EarI | CTCTTC | 3 cut(s) | 323, 349, 684 |
| Ecl136II | GAGCTC | 2 cut(s) | 335, 718 |
| Eco130I | CCWWGG | 2 cut(s) | 310, 1054 |
| Eco24I | GRGCYC | 2 cut(s) | 337, 720 |
| Eco31I | GGTCTC | 1 cut(s) | 980 |
| Eco53kI | GAGCTC | 2 cut(s) | 335, 718 |
| Eco57I | CTGAAG | 1 cut(s) | 1035 |
| EcoICRI | GAGCTC | 2 cut(s) | 335, 718 |
| EcoT14I | CCWWGG | 2 cut(s) | 310, 1054 |
| EcoT38I | GRGCYC | 2 cut(s) | 337, 720 |
| ErhI | CCWWGG | 2 cut(s) | 310, 1054 |
| FaeI | CATG | 6 cut(s) | 79, 449, 778, 830, 908, 982 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1079 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 6 cut(s) | 75, 445, 774, 826, 904, 978 |
| FbaI | TGATCA | 1 cut(s) | 909 |
| Fnu4HI | GCNGC | 3 cut(s) | 109, 341, 464 |
| FokI | GGATG | 1 cut(s) | 821 |
| FriOI | GRGCYC | 2 cut(s) | 337, 720 |
| Fsp4HI | GCNGC | 3 cut(s) | 109, 341, 464 |
| FspBI | CTAG | 1 cut(s) | 39 |
| GluI | GCNGC | 3 cut(s) | 109, 341, 464 |
| HaeIII | GGCC | 2 cut(s) | 176, 1050 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 999 |
| Hin1II | CATG | 6 cut(s) | 79, 449, 778, 830, 908, 982 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HindIII | AAGCTT | 1 cut(s) | 833 |
| HinfI | GANTC | 6 cut(s) | 42, 127, 290, 536, 755, 897 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 5 cut(s) | 220, 337, 461, 541, 794 |
| Hpy166II | GTNNAC | 3 cut(s) | 430, 662, 798 |
| Hpy188I | TCNGA | 3 cut(s) | 414, 985, 1015 |
| Hpy8I | GTNNAC | 3 cut(s) | 430, 662, 798 |
| HpyAV | CCTTC | 1 cut(s) | 862 |
| HpyCH4III | ACNGT | 1 cut(s) | 1022 |
| HpyCH4IV | ACGT | 1 cut(s) | 516 |
| HpyCH4V | TGCA | 5 cut(s) | 188, 343, 590, 662, 974 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 609, 1056 |
| HpyF3I | CTNAG | 5 cut(s) | 159, 336, 488, 757, 984 |
| HpySE526I | ACGT | 1 cut(s) | 516 |
| Hsp92II | CATG | 6 cut(s) | 79, 449, 778, 830, 908, 982 |
| Ksp22I | TGATCA | 1 cut(s) | 909 |
| Kzo9I | GATC | 3 cut(s) | 92, 568, 909 |
| LmnI | GCTCC | 5 cut(s) | 375, 460, 530, 972, 1092 |
| LpnPI | CCDG | 7 cut(s) | 144, 329, 513, 578, 657, 744, 1009 |
| Lsp1109I | GCAGC | 2 cut(s) | 327, 475 |
| LweI | GCATC | 3 cut(s) | 175, 486, 684 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeII | ACGT | 1 cut(s) | 516 |
| MaeIII | GTNAC | 3 cut(s) | 782, 839, 1043 |
| MalI | GATC | 3 cut(s) | 94, 570, 911 |
| MboI | GATC | 3 cut(s) | 92, 568, 909 |
| MboII | GAAGA | 7 cut(s) | 194, 340, 366, 545, 701, 749, 1028 |
| MhlI | GDGCHC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| MlyI | GAGTC | 2 cut(s) | 284, 749 |
| MmeI | TCCRAC | 1 cut(s) | 564 |
| MnlI | CCTC | 4 cut(s) | 154, 291, 358, 1083 |
| MseI | TTAA | 4 cut(s) | 419, 510, 992, 1070 |
| MslI | CAYNNNNRTG | 5 cut(s) | 554, 777, 803, 891, 905 |
| MspA1I | CMGCKG | 1 cut(s) | 340 |
| MspI | CCGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 2 cut(s) | 605, 644 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 609, 1056 |
| NdeII | GATC | 3 cut(s) | 92, 568, 909 |
| NlaIII | CATG | 6 cut(s) | 79, 449, 778, 830, 908, 982 |
| NmuCI | GTSAC | 1 cut(s) | 782 |
| NspI | RCATGY | 2 cut(s) | 830, 908 |
| NspV | TTCGAA | 1 cut(s) | 352 |
| OliI | CACNNNNGTG | 2 cut(s) | 777, 905 |
| PciI | ACATGT | 2 cut(s) | 826, 904 |
| PctI | GAATGC | 2 cut(s) | 605, 644 |
| PfeI | GAWTC | 4 cut(s) | 42, 127, 536, 897 |
| PkrI | GCNGC | 3 cut(s) | 110, 342, 465 |
| PleI | GAGTC | 2 cut(s) | 284, 749 |
| PpsI | GAGTC | 2 cut(s) | 284, 749 |
| Ppu21I | YACGTR | 1 cut(s) | 517 |
| PscI | ACATGT | 2 cut(s) | 826, 904 |
| Psp124BI | GAGCTC | 2 cut(s) | 337, 720 |
| PspPI | GGNCC | 1 cut(s) | 174 |
| PstI | CTGCAG | 1 cut(s) | 345 |
| PvuII | CAGCTG | 1 cut(s) | 340 |
| RsaI | GTAC | 2 cut(s) | 308, 1024 |
| RsaNI | GTAC | 2 cut(s) | 307, 1023 |
| RseI | CAYNNNNRTG | 5 cut(s) | 554, 777, 803, 891, 905 |
| SacI | GAGCTC | 2 cut(s) | 337, 720 |
| SaqAI | TTAA | 4 cut(s) | 419, 510, 992, 1070 |
| SatI | GCNGC | 3 cut(s) | 109, 341, 464 |
| Sau3AI | GATC | 3 cut(s) | 92, 568, 909 |
| Sau96I | GGNCC | 1 cut(s) | 174 |
| ScaI | AGTACT | 1 cut(s) | 1024 |
| SchI | GAGTC | 2 cut(s) | 284, 749 |
| SduI | GDGCHC | 6 cut(s) | 337, 372, 527, 664, 720, 969 |
| SfaNI | GCATC | 3 cut(s) | 175, 486, 684 |
| SfcI | CTRYAG | 1 cut(s) | 341 |
| SfuI | TTCGAA | 1 cut(s) | 352 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 554, 777, 803, 891, 905 |
| SsiI | CCGC | 3 cut(s) | 108, 790, 948 |
| SspMI | CTAG | 1 cut(s) | 39 |
| SstI | GAGCTC | 2 cut(s) | 337, 720 |
| StyI | CCWWGG | 2 cut(s) | 310, 1054 |
| TaaI | ACNGT | 1 cut(s) | 1022 |
| TaiI | ACGT | 1 cut(s) | 519 |
| TaqI | TCGA | 4 cut(s) | 45, 352, 494, 820 |
| TatI | WGTACW | 1 cut(s) | 1022 |
| TauI | GCSGC | 1 cut(s) | 111 |
| TfiI | GAWTC | 4 cut(s) | 42, 127, 536, 897 |
| Tru1I | TTAA | 4 cut(s) | 419, 510, 992, 1070 |
| Tru9I | TTAA | 4 cut(s) | 419, 510, 992, 1070 |
| TscAI | CASTG | 3 cut(s) | 163, 597, 919 |
| TseFI | GTSAC | 1 cut(s) | 782 |
| TseI | GCWGC | 2 cut(s) | 340, 463 |
| Tsp45I | GTSAC | 1 cut(s) | 782 |
| TspDTI | ATGAA | 3 cut(s) | 392, 414, 452 |
| TspRI | CASTG | 3 cut(s) | 163, 597, 919 |
| VneI | GTGCAC | 1 cut(s) | 660 |
| XapI | RAATTY | 2 cut(s) | 483, 506 |
| XceI | RCATGY | 2 cut(s) | 830, 908 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 380 |
| XspI | CTAG | 1 cut(s) | 39 |
| ZrmI | AGTACT | 1 cut(s) | 1024 |